RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 COL18A1P39060 1754 aa21.27■■□□□ 1
HPS4-216ENST00000493455 MYBBP1AQ9BQG0 1328 aaKnown RBP21.27■□□□□ 0.99
HPS4-216ENST00000493455 HOXC9P31274 260 aa21.26■□□□□ 0.99
HPS4-216ENST00000493455 STRN4Q9NRL3 753 aa21.26■□□□□ 0.99
HPS4-216ENST00000493455 FLT4P35916 1363 aa21.25■□□□□ 0.99
HPS4-216ENST00000493455 LMO7Q8WWI1 1683 aa21.25■□□□□ 0.99
HPS4-216ENST00000493455 BTG4Q9NY30 223 aa21.25■□□□□ 0.99
HPS4-216ENST00000493455 AXIN2Q9Y2T1 843 aa21.24■□□□□ 0.99
HPS4-216ENST00000493455 RTL1A6NKG5 1358 aa21.23■□□□□ 0.99
HPS4-216ENST00000493455 HSP90AB2PQ58FF8 381 aa21.23■□□□□ 0.99
HPS4-216ENST00000493455 IP6K1Q92551 441 aa21.23■□□□□ 0.99
HPS4-216ENST00000493455 CAMTA1Q9Y6Y1 1673 aa21.23■□□□□ 0.99
HPS4-216ENST00000493455 SMG6Q86US8 1419 aaKnown RBP21.22■□□□□ 0.99
HPS4-216ENST00000493455 CDK12Q9NYV4 1490 aaPredicted RBP21.22■□□□□ 0.99
HPS4-216ENST00000493455 CSB-PGBD3P0DP91 1061 aa21.22■□□□□ 0.99
HPS4-216ENST00000493455 EVA1CP58658 441 aa21.22■□□□□ 0.99
HPS4-216ENST00000493455 AFF2P51816 1311 aa21.22■□□□□ 0.99
HPS4-216ENST00000493455 NWD2Q9ULI1 1742 aa21.21■□□□□ 0.99
HPS4-216ENST00000493455 RGPD2P0DJD1 1756 aa21.21■□□□□ 0.99
HPS4-216ENST00000493455 CFAP53Q96M91 514 aa21.21■□□□□ 0.99
HPS4-216ENST00000493455 NRAPQ86VF7 1730 aa21.21■□□□□ 0.99
HPS4-216ENST00000493455 ANKRD24Q8TF21 1146 aa21.2■□□□□ 0.98
HPS4-216ENST00000493455 ABCC6O95255 1503 aa21.19■□□□□ 0.98
HPS4-216ENST00000493455 USP21Q9UK80 565 aa21.19■□□□□ 0.98
HPS4-216ENST00000493455 CCDC9Q9Y3X0 531 aaKnown RBP21.19■□□□□ 0.98
HPS4-216ENST00000493455 BLMP54132 1417 aaPredicted RBP21.19■□□□□ 0.98
HPS4-216ENST00000493455 MIER1Q8N108 512 aa21.18■□□□□ 0.98
HPS4-216ENST00000493455 PHF23Q9BUL5 403 aaPredicted RBP21.18■□□□□ 0.98
HPS4-216ENST00000493455 KIF24Q5T7B8 1368 aa21.18■□□□□ 0.98
HPS4-216ENST00000493455 COL5A2P05997 1499 aaPredicted RBP21.18■□□□□ 0.98
HPS4-216ENST00000493455 SLIT2O94813 1529 aa21.18■□□□□ 0.98
HPS4-216ENST00000493455 INSRP06213 1382 aa21.17■□□□□ 0.98
HPS4-216ENST00000493455 EIF4A2Q14240 407 aaKnown RBP21.15■□□□□ 0.98
HPS4-216ENST00000493455 TOM1L2Q6ZVM7 507 aa21.15■□□□□ 0.98
HPS4-216ENST00000493455 NLRP2Q9NX02 1062 aa21.15■□□□□ 0.98
HPS4-216ENST00000493455 USP35Q9P2H5 1018 aa21.15■□□□□ 0.98
HPS4-216ENST00000493455 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.15■□□□□ 0.98
HPS4-216ENST00000493455 ERBB3P21860 1342 aa21.14■□□□□ 0.97
HPS4-216ENST00000493455 U2SURPO15042 1029 aaKnown RBP21.14■□□□□ 0.97
HPS4-216ENST00000493455 DIAPH1O60610 1272 aaKnown RBP21.14■□□□□ 0.97
HPS4-216ENST00000493455 CCDC184Q52MB2 194 aa21.14■□□□□ 0.97
HPS4-216ENST00000493455 LARP1Q6PKG0 1096 aaKnown RBP21.14■□□□□ 0.97
HPS4-216ENST00000493455 UNC5CLQ8IV45 518 aa21.14■□□□□ 0.97
HPS4-216ENST00000493455 MRS2Q9HD23 443 aa21.14■□□□□ 0.97
HPS4-216ENST00000493455 FAM208AQ9UK61 1670 aaKnown RBP21.14■□□□□ 0.97
HPS4-216ENST00000493455 COL3A1P02461 1466 aaPredicted RBP21.13■□□□□ 0.97
HPS4-216ENST00000493455 BCL9LQ86UU0 1499 aa21.13■□□□□ 0.97
HPS4-216ENST00000493455 FNBP4Q8N3X1 1017 aaPredicted RBP21.13■□□□□ 0.97
HPS4-216ENST00000493455 USHBP1Q8N6Y0 703 aa21.13■□□□□ 0.97
HPS4-216ENST00000493455 WDR17Q8IZU2 1322 aa21.12■□□□□ 0.97
HPS4-216ENST00000493455 IL13P35225 146 aa21.09■□□□□ 0.97
HPS4-216ENST00000493455 NUDCQ9Y266 331 aa21.09■□□□□ 0.97
HPS4-216ENST00000493455 CRB1P82279 1406 aa21.09■□□□□ 0.97
HPS4-216ENST00000493455 NBPF6Q5VWK0 638 aa21.08■□□□□ 0.97
HPS4-216ENST00000493455 NBPF4Q96M43 638 aa21.08■□□□□ 0.97
HPS4-216ENST00000493455 EYA1Q99502 592 aa21.08■□□□□ 0.97
HPS4-216ENST00000493455 ZNF772Q68DY9 489 aaPredicted RBP21.07■□□□□ 0.96
HPS4-216ENST00000493455 QTRT2Q9H974 415 aaKnown RBP21.07■□□□□ 0.96
HPS4-216ENST00000493455 TRPC5Q9UL62 973 aaPredicted RBP21.07■□□□□ 0.96
HPS4-216ENST00000493455 HMOX1P09601 288 aa21.06■□□□□ 0.96
HPS4-216ENST00000493455 U2AF1L5P0DN76 240 aaPredicted RBP21.06■□□□□ 0.96
HPS4-216ENST00000493455 U2AF1Q01081 240 aaKnown RBP eCLIP21.06■□□□□ 0.96
HPS4-216ENST00000493455 WDR43Q15061 677 aaKnown RBP eCLIP21.06■□□□□ 0.96
HPS4-216ENST00000493455 VPS72Q15906 364 aa21.06■□□□□ 0.96
HPS4-216ENST00000493455 RGPD1P0DJD0 1748 aa21.06■□□□□ 0.96
HPS4-216ENST00000493455 A0A0G2JS52 829 aa21.05■□□□□ 0.96
HPS4-216ENST00000493455 MYT1Q01538 1121 aa21.05■□□□□ 0.96
HPS4-216ENST00000493455 ATRNO75882 1429 aa21.04■□□□□ 0.96
HPS4-216ENST00000493455 WNK3Q9BYP7 1800 aa21.04■□□□□ 0.96
HPS4-216ENST00000493455 SULT6B1Q6IMI4 303 aa21.04■□□□□ 0.96
HPS4-216ENST00000493455 AEBP1Q8IUX7 1158 aa21.04■□□□□ 0.96
HPS4-216ENST00000493455 SPATA31A5Q5VU36 1347 aa21.04■□□□□ 0.96
HPS4-216ENST00000493455 SPATA31A7Q8IWB4 1347 aa21.04■□□□□ 0.96
HPS4-216ENST00000493455 CARD10Q9BWT7 1032 aa21.03■□□□□ 0.96
HPS4-216ENST00000493455 SPATA31A1Q5TZJ5 1347 aa21.03■□□□□ 0.96
HPS4-216ENST00000493455 IGSF1Q8N6C5 1336 aa21.03■□□□□ 0.96
HPS4-216ENST00000493455 GLI3P10071 1580 aa21.02■□□□□ 0.96
HPS4-216ENST00000493455 CCER2I3L3R5 266 aa21.02■□□□□ 0.96
HPS4-216ENST00000493455 RGS17Q9UGC6 210 aaPredicted RBP21.02■□□□□ 0.96
HPS4-216ENST00000493455 FAM9BQ8IZU0 186 aa21.01■□□□□ 0.95
HPS4-216ENST00000493455 TCP11L2Q8N4U5 519 aa21.01■□□□□ 0.95
HPS4-216ENST00000493455 GJD4Q96KN9 370 aaPredicted RBP21.01■□□□□ 0.95
HPS4-216ENST00000493455 FAM98CQ17RN3 349 aaKnown RBP21■□□□□ 0.95
HPS4-216ENST00000493455 POTEAQ6S8J7 498 aa20.99■□□□□ 0.95
HPS4-216ENST00000493455 RAPGEF4Q8WZA2 1011 aa20.99■□□□□ 0.95
HPS4-216ENST00000493455 PARP4Q9UKK3 1724 aaKnown RBP20.98■□□□□ 0.95
HPS4-216ENST00000493455 TATP17735 454 aaPredicted RBP20.97■□□□□ 0.95
HPS4-216ENST00000493455 MEGF6O75095 1541 aa20.97■□□□□ 0.95
HPS4-216ENST00000493455 IL2RBP14784 551 aa20.96■□□□□ 0.95
HPS4-216ENST00000493455 PRKAR2BP31323 418 aa20.96■□□□□ 0.95
HPS4-216ENST00000493455 CCDC146Q8IYE0 955 aa20.96■□□□□ 0.95
HPS4-216ENST00000493455 ADAMTS8Q9UP79 889 aa20.96■□□□□ 0.95
HPS4-216ENST00000493455 RXRBP28702 533 aa20.95■□□□□ 0.94
HPS4-216ENST00000493455 RBM6P78332 1123 aaKnown RBP20.95■□□□□ 0.94
HPS4-216ENST00000493455 PNISRQ8TF01 805 aaKnown RBP20.95■□□□□ 0.94
HPS4-216ENST00000493455 THRAP3Q9Y2W1 955 aaKnown RBP20.95■□□□□ 0.94
HPS4-216ENST00000493455 RSPH6AQ9H0K4 717 aa20.94■□□□□ 0.94
HPS4-216ENST00000493455 NCAPD2Q15021 1401 aa20.94■□□□□ 0.94
HPS4-216ENST00000493455 SENP3-EIF4A1A0A087X0R7 540 aa20.93■□□□□ 0.94
HPS4-216ENST00000493455 NEFMP07197 916 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms