RNA–Protein interactions for RNA: ENST00000491967.1

SMARCB1-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 605 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-207ENST00000491967 PARD3Q8TEW0 1356 aa11.91□□□□□ -0.5
SMARCB1-207ENST00000491967 WDR17Q8IZU2 1322 aa11.9□□□□□ -0.5
SMARCB1-207ENST00000491967 LRP5O75197 1615 aa11.9□□□□□ -0.5
SMARCB1-207ENST00000491967 BCL9O00512 1426 aa11.9□□□□□ -0.5
SMARCB1-207ENST00000491967 TRIM37O94972 964 aa11.9□□□□□ -0.5
SMARCB1-207ENST00000491967 PDE3BQ13370 1112 aa11.9□□□□□ -0.5
SMARCB1-207ENST00000491967 SLC12A5Q9H2X9 1139 aa11.9□□□□□ -0.5
SMARCB1-207ENST00000491967 SBF2Q86WG5 1849 aa11.9□□□□□ -0.5
SMARCB1-207ENST00000491967 WNK3Q9BYP7 1800 aa11.89□□□□□ -0.51
SMARCB1-207ENST00000491967 SLC24A1O60721 1099 aa11.89□□□□□ -0.51
SMARCB1-207ENST00000491967 RREB1Q92766 1687 aa11.88□□□□□ -0.51
SMARCB1-207ENST00000491967 EDC4Q6P2E9 1401 aaKnown RBP11.88□□□□□ -0.51
SMARCB1-207ENST00000491967 CDCA7Q9BWT1 371 aaPredicted RBP11.88□□□□□ -0.51
SMARCB1-207ENST00000491967 CARD10Q9BWT7 1032 aa11.88□□□□□ -0.51
SMARCB1-207ENST00000491967 LRRC37A3O60309 1634 aa11.88□□□□□ -0.51
SMARCB1-207ENST00000491967 NINLQ9Y2I6 1382 aa11.88□□□□□ -0.51
SMARCB1-207ENST00000491967 ST20-MTHFSA0A0A6YYL1 179 aa11.87□□□□□ -0.51
SMARCB1-207ENST00000491967 EZH2Q15910 746 aaKnown RBP11.87□□□□□ -0.51
SMARCB1-207ENST00000491967 APBA3O96018 575 aa11.86□□□□□ -0.51
SMARCB1-207ENST00000491967 TOM1L2Q6ZVM7 507 aa11.86□□□□□ -0.51
SMARCB1-207ENST00000491967 NME9Q86XW9 330 aa11.86□□□□□ -0.51
SMARCB1-207ENST00000491967 TERF2IPQ9NYB0 399 aa11.86□□□□□ -0.51
SMARCB1-207ENST00000491967 A0A1W2PP64 1363 aa11.86□□□□□ -0.51
SMARCB1-207ENST00000491967 RGPD3A6NKT7 1758 aaPredicted RBP11.86□□□□□ -0.51
SMARCB1-207ENST00000491967 RGPD4Q7Z3J3 1758 aa11.86□□□□□ -0.51
SMARCB1-207ENST00000491967 OVOS2A0A0J9YW53 1432 aa11.86□□□□□ -0.51
SMARCB1-207ENST00000491967 OVOS2Q6IE36 1432 aa11.86□□□□□ -0.51
SMARCB1-207ENST00000491967 HDGFL2Q7Z4V5 671 aaPredicted RBP11.85□□□□□ -0.51
SMARCB1-207ENST00000491967 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.85□□□□□ -0.51
SMARCB1-207ENST00000491967 TIMELESSQ9UNS1 1208 aa11.85□□□□□ -0.51
SMARCB1-207ENST00000491967 OVOS2A0A0G2JMS6 1433 aa11.85□□□□□ -0.51
SMARCB1-207ENST00000491967 LTN1O94822 1766 aa11.84□□□□□ -0.51
SMARCB1-207ENST00000491967 CCDC7Q96M83 1385 aa11.84□□□□□ -0.51
SMARCB1-207ENST00000491967 NUP188Q5SRE5 1749 aa11.84□□□□□ -0.51
SMARCB1-207ENST00000491967 PLSCR1O15162 318 aa11.84□□□□□ -0.51
SMARCB1-207ENST00000491967 DDB1Q16531 1140 aa11.84□□□□□ -0.51
SMARCB1-207ENST00000491967 MARCH10Q8NA82 808 aaPredicted RBP11.84□□□□□ -0.51
SMARCB1-207ENST00000491967 TMC1Q8TDI8 760 aa11.84□□□□□ -0.51
SMARCB1-207ENST00000491967 ERBB3P21860 1342 aa11.84□□□□□ -0.51
SMARCB1-207ENST00000491967 PSDA5PKW4 1024 aaPredicted RBP11.83□□□□□ -0.52
SMARCB1-207ENST00000491967 CLSPNQ9HAW4 1339 aa11.83□□□□□ -0.52
SMARCB1-207ENST00000491967 ZBTB7CA1YPR0 619 aa11.82□□□□□ -0.52
SMARCB1-207ENST00000491967 R3HDM1Q15032 1099 aaKnown RBP11.82□□□□□ -0.52
SMARCB1-207ENST00000491967 BCL11BQ9C0K0 894 aaPredicted RBP11.82□□□□□ -0.52
SMARCB1-207ENST00000491967 SOX12O15370 315 aa11.81□□□□□ -0.52
SMARCB1-207ENST00000491967 PTF1AQ7RTS3 328 aa11.81□□□□□ -0.52
SMARCB1-207ENST00000491967 ANKRD36BQ8N2N9 1353 aa11.8□□□□□ -0.52
SMARCB1-207ENST00000491967 PROM2Q8N271 834 aa11.8□□□□□ -0.52
SMARCB1-207ENST00000491967 IP6K1Q92551 441 aa11.8□□□□□ -0.52
SMARCB1-207ENST00000491967 USP47Q96K76 1375 aa11.79□□□□□ -0.52
SMARCB1-207ENST00000491967 EXOC5O00471 708 aa11.79□□□□□ -0.52
SMARCB1-207ENST00000491967 CSB-PGBD3P0DP91 1061 aa11.79□□□□□ -0.52
SMARCB1-207ENST00000491967 TNS2Q63HR2 1409 aa11.78□□□□□ -0.52
SMARCB1-207ENST00000491967 TMF1P82094 1093 aa11.78□□□□□ -0.52
SMARCB1-207ENST00000491967 FAM208AQ9UK61 1670 aaKnown RBP11.78□□□□□ -0.52
SMARCB1-207ENST00000491967 FYB1O15117 783 aa11.77□□□□□ -0.53
SMARCB1-207ENST00000491967 IL2RBP14784 551 aa11.77□□□□□ -0.53
SMARCB1-207ENST00000491967 NBPF14Q5TI25 921 aa11.77□□□□□ -0.53
SMARCB1-207ENST00000491967 ANKRD24Q8TF21 1146 aa11.77□□□□□ -0.53
SMARCB1-207ENST00000491967 CDCA8Q53HL2 280 aa11.76□□□□□ -0.53
SMARCB1-207ENST00000491967 COG3Q96JB2 828 aa11.76□□□□□ -0.53
SMARCB1-207ENST00000491967 NLRP2Q9NX02 1062 aa11.76□□□□□ -0.53
SMARCB1-207ENST00000491967 MAP3K19Q56UN5 1328 aa11.76□□□□□ -0.53
SMARCB1-207ENST00000491967 NHSQ6T4R5 1651 aa11.75□□□□□ -0.53
SMARCB1-207ENST00000491967 HOXC9P31274 260 aa11.75□□□□□ -0.53
SMARCB1-207ENST00000491967 KCNQ2O43526 872 aa11.74□□□□□ -0.53
SMARCB1-207ENST00000491967 FBLN1P23142 703 aa11.74□□□□□ -0.53
SMARCB1-207ENST00000491967 CARD14Q9BXL6 1004 aa11.74□□□□□ -0.53
SMARCB1-207ENST00000491967 RTL1A6NKG5 1358 aa11.74□□□□□ -0.53
SMARCB1-207ENST00000491967 MYOM1P52179 1685 aa11.74□□□□□ -0.53
SMARCB1-207ENST00000491967 CASZ1Q86V15 1759 aa11.74□□□□□ -0.53
SMARCB1-207ENST00000491967 RGPD2P0DJD1 1756 aa11.73□□□□□ -0.53
SMARCB1-207ENST00000491967 TXNRD1Q16881 649 aa11.73□□□□□ -0.53
SMARCB1-207ENST00000491967 KIF24Q5T7B8 1368 aa11.73□□□□□ -0.53
SMARCB1-207ENST00000491967 KAT6BQ8WYB5 2073 aa11.73□□□□□ -0.53
SMARCB1-207ENST00000491967 ANO8Q9HCE9 1232 aaPredicted RBP11.73□□□□□ -0.53
SMARCB1-207ENST00000491967 SHANK3Q9BYB0 1731 aa11.72□□□□□ -0.53
SMARCB1-207ENST00000491967 BTAF1O14981 1849 aa11.71□□□□□ -0.54
SMARCB1-207ENST00000491967 KIF20BQ96Q89 1820 aa11.71□□□□□ -0.54
SMARCB1-207ENST00000491967 AMPHP49418 695 aa11.7□□□□□ -0.54
SMARCB1-207ENST00000491967 GGNBP2Q9H3C7 697 aa11.7□□□□□ -0.54
SMARCB1-207ENST00000491967 SPON1Q9HCB6 807 aa11.7□□□□□ -0.54
SMARCB1-207ENST00000491967 PAPPAQ13219 1627 aa11.7□□□□□ -0.54
SMARCB1-207ENST00000491967 INSRP06213 1382 aa11.69□□□□□ -0.54
SMARCB1-207ENST00000491967 CGNL1Q0VF96 1302 aa11.69□□□□□ -0.54
SMARCB1-207ENST00000491967 RRS1Q15050 365 aaKnown RBP11.69□□□□□ -0.54
SMARCB1-207ENST00000491967 NBPF6Q5VWK0 638 aa11.69□□□□□ -0.54
SMARCB1-207ENST00000491967 NBPF4Q96M43 638 aa11.69□□□□□ -0.54
SMARCB1-207ENST00000491967 ANKRD26Q9UPS8 1709 aa11.69□□□□□ -0.54
SMARCB1-207ENST00000491967 SLC15A2Q16348 729 aa11.68□□□□□ -0.54
SMARCB1-207ENST00000491967 LTV1Q96GA3 475 aaPredicted RBP11.68□□□□□ -0.54
SMARCB1-207ENST00000491967 PDGFDQ9GZP0 370 aaPredicted RBP11.68□□□□□ -0.54
SMARCB1-207ENST00000491967 MEGF6O75095 1541 aa11.68□□□□□ -0.54
SMARCB1-207ENST00000491967 NCAPD2Q15021 1401 aa11.68□□□□□ -0.54
SMARCB1-207ENST00000491967 HSP90AB2PQ58FF8 381 aa11.67□□□□□ -0.54
SMARCB1-207ENST00000491967 ZCRB1Q8TBF4 217 aaKnown RBP11.67□□□□□ -0.54
SMARCB1-207ENST00000491967 ACSBG1Q96GR2 724 aa11.67□□□□□ -0.54
SMARCB1-207ENST00000491967 PCGF6Q9BYE7 350 aa11.67□□□□□ -0.54
SMARCB1-207ENST00000491967 NSD2O96028 1365 aa11.67□□□□□ -0.54
SMARCB1-207ENST00000491967 FLT4P35916 1363 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms