RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 ST20-MTHFSA0A0A6YYL1 179 aa13.77□□□□□ -0.21
TMEM39A-210ENST00000490099 DISP2A7MBM2 1401 aa13.76□□□□□ -0.21
TMEM39A-210ENST00000490099 CRB1P82279 1406 aa13.76□□□□□ -0.21
TMEM39A-210ENST00000490099 CLSPNQ9HAW4 1339 aa13.76□□□□□ -0.21
TMEM39A-210ENST00000490099 A0A0G2JS52 829 aa13.76□□□□□ -0.21
TMEM39A-210ENST00000490099 MYT1Q01538 1121 aa13.76□□□□□ -0.21
TMEM39A-210ENST00000490099 SF3B2Q13435 895 aaKnown RBP13.76□□□□□ -0.21
TMEM39A-210ENST00000490099 FAM182BQ5T319 152 aa13.76□□□□□ -0.21
TMEM39A-210ENST00000490099 FAM196AQ6ZSG2 479 aa13.76□□□□□ -0.21
TMEM39A-210ENST00000490099 USP35Q9P2H5 1018 aa13.75□□□□□ -0.21
TMEM39A-210ENST00000490099 NFAT5O94916 1531 aa13.74□□□□□ -0.21
TMEM39A-210ENST00000490099 MON2Q7Z3U7 1717 aa13.74□□□□□ -0.21
TMEM39A-210ENST00000490099 BAG6P46379 1132 aa13.74□□□□□ -0.21
TMEM39A-210ENST00000490099 TERF2IPQ9NYB0 399 aa13.74□□□□□ -0.21
TMEM39A-210ENST00000490099 EDC4Q6P2E9 1401 aaKnown RBP13.73□□□□□ -0.21
TMEM39A-210ENST00000490099 NINLQ9Y2I6 1382 aa13.73□□□□□ -0.21
TMEM39A-210ENST00000490099 WDR17Q8IZU2 1322 aa13.73□□□□□ -0.21
TMEM39A-210ENST00000490099 HDGFL2Q7Z4V5 671 aaPredicted RBP13.73□□□□□ -0.21
TMEM39A-210ENST00000490099 NME9Q86XW9 330 aa13.73□□□□□ -0.21
TMEM39A-210ENST00000490099 USP54Q70EL1 1684 aa13.72□□□□□ -0.21
TMEM39A-210ENST00000490099 C1QBPQ07021 282 aaKnown RBP13.72□□□□□ -0.21
TMEM39A-210ENST00000490099 PDE3BQ13370 1112 aa13.72□□□□□ -0.21
TMEM39A-210ENST00000490099 TMC1Q8TDI8 760 aa13.72□□□□□ -0.21
TMEM39A-210ENST00000490099 CARD10Q9BWT7 1032 aa13.72□□□□□ -0.21
TMEM39A-210ENST00000490099 A0A1W2PP64 1363 aa13.71□□□□□ -0.21
TMEM39A-210ENST00000490099 ABCC6O95255 1503 aa13.71□□□□□ -0.21
TMEM39A-210ENST00000490099 C11orf95C9JLR9 678 aaPredicted RBP13.71□□□□□ -0.21
TMEM39A-210ENST00000490099 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.71□□□□□ -0.21
TMEM39A-210ENST00000490099 CAMKK2Q96RR4 588 aa13.71□□□□□ -0.21
TMEM39A-210ENST00000490099 CDCA7Q9BWT1 371 aaPredicted RBP13.71□□□□□ -0.21
TMEM39A-210ENST00000490099 TRIM37O94972 964 aa13.7□□□□□ -0.22
TMEM39A-210ENST00000490099 EN1Q05925 392 aaPredicted RBP13.7□□□□□ -0.22
TMEM39A-210ENST00000490099 TOM1L2Q6ZVM7 507 aa13.7□□□□□ -0.22
TMEM39A-210ENST00000490099 OVOS2A0A0J9YW53 1432 aa13.69□□□□□ -0.22
TMEM39A-210ENST00000490099 BCL9O00512 1426 aa13.69□□□□□ -0.22
TMEM39A-210ENST00000490099 OVOS2Q6IE36 1432 aa13.69□□□□□ -0.22
TMEM39A-210ENST00000490099 RGPD1P0DJD0 1748 aa13.69□□□□□ -0.22
TMEM39A-210ENST00000490099 PARP4Q9UKK3 1724 aaKnown RBP13.69□□□□□ -0.22
TMEM39A-210ENST00000490099 PARD3Q8TEW0 1356 aa13.69□□□□□ -0.22
TMEM39A-210ENST00000490099 USP47Q96K76 1375 aa13.69□□□□□ -0.22
TMEM39A-210ENST00000490099 SRCAPQ6ZRS2 3230 aa13.68□□□□□ -0.22
TMEM39A-210ENST00000490099 TNS1Q9HBL0 1735 aaKnown RBP13.67□□□□□ -0.22
TMEM39A-210ENST00000490099 ZBTB7CA1YPR0 619 aa13.67□□□□□ -0.22
TMEM39A-210ENST00000490099 TMF1P82094 1093 aa13.67□□□□□ -0.22
TMEM39A-210ENST00000490099 PEAK1Q9H792 1746 aa13.67□□□□□ -0.22
TMEM39A-210ENST00000490099 SOX12O15370 315 aa13.66□□□□□ -0.22
TMEM39A-210ENST00000490099 EZH2Q15910 746 aaKnown RBP13.66□□□□□ -0.22
TMEM39A-210ENST00000490099 DDB1Q16531 1140 aa13.66□□□□□ -0.22
TMEM39A-210ENST00000490099 ANKRD36BQ8N2N9 1353 aa13.66□□□□□ -0.22
TMEM39A-210ENST00000490099 CCDC7Q96M83 1385 aa13.66□□□□□ -0.22
TMEM39A-210ENST00000490099 ERBB3P21860 1342 aa13.65□□□□□ -0.22
TMEM39A-210ENST00000490099 APBA3O96018 575 aa13.65□□□□□ -0.22
TMEM39A-210ENST00000490099 MARCH10Q8NA82 808 aaPredicted RBP13.65□□□□□ -0.22
TMEM39A-210ENST00000490099 IP6K1Q92551 441 aa13.65□□□□□ -0.22
TMEM39A-210ENST00000490099 RGPD5Q99666 1765 aa13.65□□□□□ -0.22
TMEM39A-210ENST00000490099 PLSCR1O15162 318 aa13.64□□□□□ -0.23
TMEM39A-210ENST00000490099 PCGF6Q9BYE7 350 aa13.64□□□□□ -0.23
TMEM39A-210ENST00000490099 OVOS2A0A0G2JMS6 1433 aa13.64□□□□□ -0.23
TMEM39A-210ENST00000490099 FYB1O15117 783 aa13.63□□□□□ -0.23
TMEM39A-210ENST00000490099 CSB-PGBD3P0DP91 1061 aa13.63□□□□□ -0.23
TMEM39A-210ENST00000490099 CDCA8Q53HL2 280 aa13.63□□□□□ -0.23
TMEM39A-210ENST00000490099 SAMD1Q6SPF0 538 aaPredicted RBP13.63□□□□□ -0.23
TMEM39A-210ENST00000490099 BCL11BQ9C0K0 894 aaPredicted RBP13.63□□□□□ -0.23
TMEM39A-210ENST00000490099 LRRC37A3O60309 1634 aa13.63□□□□□ -0.23
TMEM39A-210ENST00000490099 EXOC5O00471 708 aa13.61□□□□□ -0.23
TMEM39A-210ENST00000490099 ANKRD24Q8TF21 1146 aa13.61□□□□□ -0.23
TMEM39A-210ENST00000490099 COG3Q96JB2 828 aa13.61□□□□□ -0.23
TMEM39A-210ENST00000490099 CARD14Q9BXL6 1004 aa13.61□□□□□ -0.23
TMEM39A-210ENST00000490099 MAP3K19Q56UN5 1328 aa13.61□□□□□ -0.23
TMEM39A-210ENST00000490099 PTF1AQ7RTS3 328 aa13.6□□□□□ -0.23
TMEM39A-210ENST00000490099 NLRP2Q9NX02 1062 aa13.6□□□□□ -0.23
TMEM39A-210ENST00000490099 PSDA5PKW4 1024 aaPredicted RBP13.59□□□□□ -0.23
TMEM39A-210ENST00000490099 IL2RBP14784 551 aa13.59□□□□□ -0.23
TMEM39A-210ENST00000490099 FBLN1P23142 703 aa13.59□□□□□ -0.23
TMEM39A-210ENST00000490099 R3HDM1Q15032 1099 aaKnown RBP13.59□□□□□ -0.23
TMEM39A-210ENST00000490099 PROM2Q8N271 834 aa13.59□□□□□ -0.23
TMEM39A-210ENST00000490099 SBF2Q86WG5 1849 aa13.59□□□□□ -0.23
TMEM39A-210ENST00000490099 WNK3Q9BYP7 1800 aa13.59□□□□□ -0.23
TMEM39A-210ENST00000490099 LTN1O94822 1766 aa13.58□□□□□ -0.23
TMEM39A-210ENST00000490099 TNS2Q63HR2 1409 aa13.58□□□□□ -0.24
TMEM39A-210ENST00000490099 HOXC9P31274 260 aa13.58□□□□□ -0.24
TMEM39A-210ENST00000490099 LRP5O75197 1615 aa13.57□□□□□ -0.24
TMEM39A-210ENST00000490099 RREB1Q92766 1687 aa13.57□□□□□ -0.24
TMEM39A-210ENST00000490099 ATXN8OSP0DMR3 200 aa13.56□□□□□ -0.24
TMEM39A-210ENST00000490099 GGNBP2Q9H3C7 697 aa13.56□□□□□ -0.24
TMEM39A-210ENST00000490099 RTL1A6NKG5 1358 aa13.55□□□□□ -0.24
TMEM39A-210ENST00000490099 KIF24Q5T7B8 1368 aa13.55□□□□□ -0.24
TMEM39A-210ENST00000490099 RGPD3A6NKT7 1758 aaPredicted RBP13.55□□□□□ -0.24
TMEM39A-210ENST00000490099 RGPD4Q7Z3J3 1758 aa13.55□□□□□ -0.24
TMEM39A-210ENST00000490099 NUP188Q5SRE5 1749 aa13.54□□□□□ -0.24
TMEM39A-210ENST00000490099 KCNQ2O43526 872 aa13.54□□□□□ -0.24
TMEM39A-210ENST00000490099 AMPHP49418 695 aa13.54□□□□□ -0.24
TMEM39A-210ENST00000490099 NBPF14Q5TI25 921 aa13.54□□□□□ -0.24
TMEM39A-210ENST00000490099 RRS1Q15050 365 aaKnown RBP13.53□□□□□ -0.24
TMEM39A-210ENST00000490099 CCER1Q8TC90 406 aaPredicted RBP13.53□□□□□ -0.24
TMEM39A-210ENST00000490099 EIF4G2P78344 907 aaKnown RBP eCLIP13.52□□□□□ -0.25
TMEM39A-210ENST00000490099 NBPF6Q5VWK0 638 aa13.52□□□□□ -0.25
TMEM39A-210ENST00000490099 NBPF4Q96M43 638 aa13.52□□□□□ -0.25
TMEM39A-210ENST00000490099 INSRP06213 1382 aa13.52□□□□□ -0.25
TMEM39A-210ENST00000490099 MYOM1P52179 1685 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms