RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 NBPF11Q86T75 865 aa7.22□□□□□ -1.25
DEPDC1-204ENST00000489862 GPR37O15354 613 aa7.21□□□□□ -1.26
DEPDC1-204ENST00000489862 GUCA2AQ02747 115 aa7.21□□□□□ -1.26
DEPDC1-204ENST00000489862 PHOX2BQ99453 314 aa7.21□□□□□ -1.26
DEPDC1-204ENST00000489862 IGF1RP08069 1367 aa7.21□□□□□ -1.26
DEPDC1-204ENST00000489862 C6orf229H3BNL8 230 aa7.2□□□□□ -1.26
DEPDC1-204ENST00000489862 ZFP64Q9NPA5 681 aa7.19□□□□□ -1.26
DEPDC1-204ENST00000489862 COBLO75128 1261 aa7.19□□□□□ -1.26
DEPDC1-204ENST00000489862 AGERQ15109 404 aa7.19□□□□□ -1.26
DEPDC1-204ENST00000489862 GMCL1Q96IK5 515 aa7.19□□□□□ -1.26
DEPDC1-204ENST00000489862 LCE1DQ5T752 114 aa7.18□□□□□ -1.26
DEPDC1-204ENST00000489862 GPIHBP1Q8IV16 184 aa7.18□□□□□ -1.26
DEPDC1-204ENST00000489862 FOXJ1Q92949 421 aa7.17□□□□□ -1.26
DEPDC1-204ENST00000489862 NSFL1CQ9UNZ2 370 aaKnown RBP7.17□□□□□ -1.26
DEPDC1-204ENST00000489862 PIK3R2O00459 728 aa7.16□□□□□ -1.26
DEPDC1-204ENST00000489862 ITGB7P26010 798 aa7.16□□□□□ -1.26
DEPDC1-204ENST00000489862 CTHP32929 405 aa7.16□□□□□ -1.26
DEPDC1-204ENST00000489862 BPHLQ86WA6 291 aaPredicted RBP7.16□□□□□ -1.26
DEPDC1-204ENST00000489862 CCDC116Q8IYX3 515 aa7.16□□□□□ -1.26
DEPDC1-204ENST00000489862 ACDQ96AP0 544 aa7.16□□□□□ -1.26
DEPDC1-204ENST00000489862 PGPEP1Q9NXJ5 209 aa7.16□□□□□ -1.26
DEPDC1-204ENST00000489862 FSHRP23945 695 aa7.16□□□□□ -1.26
DEPDC1-204ENST00000489862 ARTNQ5T4W7 220 aa7.16□□□□□ -1.26
DEPDC1-204ENST00000489862 NUTM1Q86Y26 1132 aa7.16□□□□□ -1.26
DEPDC1-204ENST00000489862 FDX1P10109 184 aa7.15□□□□□ -1.27
DEPDC1-204ENST00000489862 C1QTNF9BB2RNN3 333 aa7.14□□□□□ -1.27
DEPDC1-204ENST00000489862 OIP5O43482 229 aa7.14□□□□□ -1.27
DEPDC1-204ENST00000489862 DESI1Q6ICB0 168 aa7.14□□□□□ -1.27
DEPDC1-204ENST00000489862 MAP4K5Q9Y4K4 846 aa7.14□□□□□ -1.27
DEPDC1-204ENST00000489862 COL8A1P27658 744 aa7.13□□□□□ -1.27
DEPDC1-204ENST00000489862 GRIN2CQ14957 1233 aa7.13□□□□□ -1.27
DEPDC1-204ENST00000489862 Q6ZVU0 165 aa7.13□□□□□ -1.27
DEPDC1-204ENST00000489862 VASH1Q7L8A9 365 aaPredicted RBP7.13□□□□□ -1.27
DEPDC1-204ENST00000489862 TULP1O00294 542 aaPredicted RBP7.12□□□□□ -1.27
DEPDC1-204ENST00000489862 SNRPNP63162 240 aaKnown RBP7.12□□□□□ -1.27
DEPDC1-204ENST00000489862 SENP3-EIF4A1A0A087X0R7 540 aa7.12□□□□□ -1.27
DEPDC1-204ENST00000489862 POLMQ9NP87 494 aaPredicted RBP7.12□□□□□ -1.27
DEPDC1-204ENST00000489862 PRR7Q8TB68 274 aa7.11□□□□□ -1.27
DEPDC1-204ENST00000489862 RRAGCQ9HB90 399 aa7.11□□□□□ -1.27
DEPDC1-204ENST00000489862 SPDYE5A6NIY4 337 aa7.1□□□□□ -1.27
DEPDC1-204ENST00000489862 CTSOP43234 321 aaPredicted RBP7.1□□□□□ -1.27
DEPDC1-204ENST00000489862 DOC2BQ14184 412 aa7.1□□□□□ -1.27
DEPDC1-204ENST00000489862 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.1□□□□□ -1.27
DEPDC1-204ENST00000489862 TRERF1Q96PN7 1200 aa7.1□□□□□ -1.27
DEPDC1-204ENST00000489862 CD163Q86VB7 1156 aa7.09□□□□□ -1.27
DEPDC1-204ENST00000489862 YBX3P16989 372 aaKnown RBP eCLIP7.09□□□□□ -1.28
DEPDC1-204ENST00000489862 CBLBQ13191 982 aa7.09□□□□□ -1.28
DEPDC1-204ENST00000489862 TRIM22Q8IYM9 498 aa7.09□□□□□ -1.28
DEPDC1-204ENST00000489862 RNF217Q8TC41 542 aa7.09□□□□□ -1.28
DEPDC1-204ENST00000489862 MX2P20592 715 aa7.08□□□□□ -1.28
DEPDC1-204ENST00000489862 ZNF837Q96EG3 531 aaPredicted RBP7.08□□□□□ -1.28
DEPDC1-204ENST00000489862 INSM2Q96T92 566 aaPredicted RBP7.08□□□□□ -1.28
DEPDC1-204ENST00000489862 CUEDC1Q9NWM3 386 aaPredicted RBP7.08□□□□□ -1.28
DEPDC1-204ENST00000489862 C4orf48Q5BLP8 95 aa7.07□□□□□ -1.28
DEPDC1-204ENST00000489862 PCDHGC3Q9UN70 934 aa7.07□□□□□ -1.28
DEPDC1-204ENST00000489862 GPR25O00155 361 aa7.06□□□□□ -1.28
DEPDC1-204ENST00000489862 MAP2K3P46734 347 aa7.06□□□□□ -1.28
DEPDC1-204ENST00000489862 MAP2K5Q13163 448 aa7.06□□□□□ -1.28
DEPDC1-204ENST00000489862 PPP1R26Q5T8A7 1209 aaPredicted RBP7.06□□□□□ -1.28
DEPDC1-204ENST00000489862 C1QTNF2Q9BXJ5 285 aa7.06□□□□□ -1.28
DEPDC1-204ENST00000489862 H7C1W4 665 aa7.05□□□□□ -1.28
DEPDC1-204ENST00000489862 IRF6O14896 467 aa7.05□□□□□ -1.28
DEPDC1-204ENST00000489862 TXKP42681 527 aa7.05□□□□□ -1.28
DEPDC1-204ENST00000489862 TRMT44Q8IYL2 757 aaKnown RBP7.05□□□□□ -1.28
DEPDC1-204ENST00000489862 OXCT2Q9BYC2 517 aaPredicted RBP7.05□□□□□ -1.28
DEPDC1-204ENST00000489862 RELBQ01201 579 aa7.05□□□□□ -1.28
DEPDC1-204ENST00000489862 PRPF38BQ5VTL8 546 aaKnown RBP7.05□□□□□ -1.28
DEPDC1-204ENST00000489862 LYPD8Q6UX82 237 aa7.05□□□□□ -1.28
DEPDC1-204ENST00000489862 NOP53Q9NZM5 478 aaKnown RBP7.05□□□□□ -1.28
DEPDC1-204ENST00000489862 MDM2Q00987 491 aaPredicted RBP7.04□□□□□ -1.28
DEPDC1-204ENST00000489862 LYSMD3Q7Z3D4 306 aa7.04□□□□□ -1.28
DEPDC1-204ENST00000489862 ARMC2Q8NEN0 867 aa7.04□□□□□ -1.28
DEPDC1-204ENST00000489862 CHRNA4P43681 627 aa7.03□□□□□ -1.28
DEPDC1-204ENST00000489862 GATA4P43694 442 aa7.03□□□□□ -1.28
DEPDC1-204ENST00000489862 DHX9Q08211 1270 aaKnown RBP7.03□□□□□ -1.28
DEPDC1-204ENST00000489862 MTMR2Q13614 643 aa7.03□□□□□ -1.28
DEPDC1-204ENST00000489862 FOXD4L6Q3SYB3 417 aaPredicted RBP7.03□□□□□ -1.28
DEPDC1-204ENST00000489862 FOXD4L3Q6VB84 417 aaPredicted RBP7.03□□□□□ -1.28
DEPDC1-204ENST00000489862 MINK1Q8N4C8 1332 aaPredicted RBP7.03□□□□□ -1.28
DEPDC1-204ENST00000489862 GNB5O14775 395 aa7.02□□□□□ -1.29
DEPDC1-204ENST00000489862 CCDC102AQ96A19 550 aa7.02□□□□□ -1.29
DEPDC1-204ENST00000489862 AGBL1Q96MI9 1066 aa7.01□□□□□ -1.29
DEPDC1-204ENST00000489862 RIPOR1Q6ZS17 1223 aa7.01□□□□□ -1.29
DEPDC1-204ENST00000489862 SUV39H2Q9H5I1 410 aa7.01□□□□□ -1.29
DEPDC1-204ENST00000489862 GDF2Q9UK05 429 aaPredicted RBP7.01□□□□□ -1.29
DEPDC1-204ENST00000489862 SHISA8B8ZZ34 492 aa7□□□□□ -1.29
DEPDC1-204ENST00000489862 PAX4O43316 350 aa7□□□□□ -1.29
DEPDC1-204ENST00000489862 ZC3H15Q8WU90 426 aaKnown RBP7□□□□□ -1.29
DEPDC1-204ENST00000489862 GTPBP3Q969Y2 492 aaKnown RBP7□□□□□ -1.29
DEPDC1-204ENST00000489862 KRTAP4-9Q9BYQ8 210 aa7□□□□□ -1.29
DEPDC1-204ENST00000489862 AMPD1P23109 780 aa6.99□□□□□ -1.29
DEPDC1-204ENST00000489862 DBN1Q16643 649 aa6.99□□□□□ -1.29
DEPDC1-204ENST00000489862 EDARADDQ8WWZ3 215 aa6.99□□□□□ -1.29
DEPDC1-204ENST00000489862 MAP10Q9P2G4 905 aa6.99□□□□□ -1.29
DEPDC1-204ENST00000489862 F12P00748 615 aaPredicted RBP6.98□□□□□ -1.29
DEPDC1-204ENST00000489862 RSPO4Q2I0M5 234 aaPredicted RBP6.98□□□□□ -1.29
DEPDC1-204ENST00000489862 NBPF14Q5TI25 921 aa6.98□□□□□ -1.29
DEPDC1-204ENST00000489862 LINC00114Q6XXX2 140 aa6.98□□□□□ -1.29
DEPDC1-204ENST00000489862 KRI1Q8N9T8 703 aaKnown RBP6.98□□□□□ -1.29
DEPDC1-204ENST00000489862 ZMYND10O75800 440 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms