RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 KIF3CO14782 793 aa11.14□□□□□ -0.63
COL9A1-209ENST00000489861 PRAM1Q96QH2 718 aa11.14□□□□□ -0.63
COL9A1-209ENST00000489861 PIK3C2GO75747 1445 aa11.14□□□□□ -0.63
COL9A1-209ENST00000489861 AATKQ6ZMQ8 1374 aa11.14□□□□□ -0.63
COL9A1-209ENST00000489861 BCL9O00512 1426 aa11.13□□□□□ -0.63
COL9A1-209ENST00000489861 DDB1Q16531 1140 aa11.13□□□□□ -0.63
COL9A1-209ENST00000489861 ZNF827Q17R98 1081 aa11.13□□□□□ -0.63
COL9A1-209ENST00000489861 COL5A2P05997 1499 aaPredicted RBP11.12□□□□□ -0.63
COL9A1-209ENST00000489861 WDR90Q96KV7 1748 aa11.12□□□□□ -0.63
COL9A1-209ENST00000489861 TUBGCP6Q96RT7 1819 aa11.12□□□□□ -0.63
COL9A1-209ENST00000489861 NGDNQ8NEJ9 315 aaKnown RBP11.12□□□□□ -0.63
COL9A1-209ENST00000489861 QSER1Q2KHR3 1735 aa11.12□□□□□ -0.63
COL9A1-209ENST00000489861 CRB1P82279 1406 aa11.11□□□□□ -0.63
COL9A1-209ENST00000489861 ITGAEP38570 1179 aa11.11□□□□□ -0.63
COL9A1-209ENST00000489861 HIRIP3Q9BW71 556 aaPredicted RBP11.11□□□□□ -0.63
COL9A1-209ENST00000489861 TULP4Q9NRJ4 1543 aa11.1□□□□□ -0.63
COL9A1-209ENST00000489861 LOC105371045A0A1W2PR82 267 aa11.1□□□□□ -0.63
COL9A1-209ENST00000489861 RGL3Q3MIN7 710 aa11.1□□□□□ -0.63
COL9A1-209ENST00000489861 JMYQ8N9B5 988 aa11.1□□□□□ -0.63
COL9A1-209ENST00000489861 CPDO75976 1380 aa11.1□□□□□ -0.63
COL9A1-209ENST00000489861 ANKRD30BQ9BXX2 1392 aa11.09□□□□□ -0.63
COL9A1-209ENST00000489861 POLD1P28340 1107 aa11.09□□□□□ -0.63
COL9A1-209ENST00000489861 HTRA3P83110 453 aa11.09□□□□□ -0.63
COL9A1-209ENST00000489861 SPATA31E1Q6ZUB1 1445 aa11.09□□□□□ -0.63
COL9A1-209ENST00000489861 NHSQ6T4R5 1651 aa11.08□□□□□ -0.64
COL9A1-209ENST00000489861 BTAF1O14981 1849 aa11.08□□□□□ -0.64
COL9A1-209ENST00000489861 PCDH10Q9P2E7 1040 aa11.08□□□□□ -0.64
COL9A1-209ENST00000489861 ARHGEF28Q8N1W1 1705 aaKnown RBP11.07□□□□□ -0.64
COL9A1-209ENST00000489861 SLC16A10Q8TF71 515 aa11.07□□□□□ -0.64
COL9A1-209ENST00000489861 KLRG1Q96E93 195 aa11.07□□□□□ -0.64
COL9A1-209ENST00000489861 C14orf93Q9H972 538 aaKnown RBP11.07□□□□□ -0.64
COL9A1-209ENST00000489861 LRRC4BQ9NT99 713 aa11.07□□□□□ -0.64
COL9A1-209ENST00000489861 MINK1Q8N4C8 1332 aaPredicted RBP11.07□□□□□ -0.64
COL9A1-209ENST00000489861 ITSN1Q15811 1721 aa11.06□□□□□ -0.64
COL9A1-209ENST00000489861 CFAP70Q5T0N1 1121 aa11.06□□□□□ -0.64
COL9A1-209ENST00000489861 AKT1S1Q96B36 256 aa11.06□□□□□ -0.64
COL9A1-209ENST00000489861 POGKQ9P215 609 aa11.06□□□□□ -0.64
COL9A1-209ENST00000489861 USP19O94966 1318 aa11.06□□□□□ -0.64
COL9A1-209ENST00000489861 PNPLA7Q6ZV29 1317 aa11.06□□□□□ -0.64
COL9A1-209ENST00000489861 COL18A1P39060 1754 aa11.05□□□□□ -0.64
COL9A1-209ENST00000489861 WWC3Q9ULE0 1092 aa11.05□□□□□ -0.64
COL9A1-209ENST00000489861 RGPD5Q99666 1765 aa11.05□□□□□ -0.64
COL9A1-209ENST00000489861 WASLO00401 505 aaPredicted RBP11.04□□□□□ -0.64
COL9A1-209ENST00000489861 EIF3AQ14152 1382 aaKnown RBP11.03□□□□□ -0.64
COL9A1-209ENST00000489861 TOMM70O94826 608 aa11.03□□□□□ -0.64
COL9A1-209ENST00000489861 GCP02774 474 aa11.03□□□□□ -0.64
COL9A1-209ENST00000489861 TOM1L2Q6ZVM7 507 aa11.03□□□□□ -0.64
COL9A1-209ENST00000489861 ACSBG1Q96GR2 724 aa11.03□□□□□ -0.64
COL9A1-209ENST00000489861 ABTB2Q8N961 1025 aa11.02□□□□□ -0.65
COL9A1-209ENST00000489861 ZBTB7CA1YPR0 619 aa11□□□□□ -0.65
COL9A1-209ENST00000489861 NUDT16Q96DE0 195 aaKnown RBP11□□□□□ -0.65
COL9A1-209ENST00000489861 CDCA7Q9BWT1 371 aaPredicted RBP11□□□□□ -0.65
COL9A1-209ENST00000489861 SLC4A1APQ9BWU0 796 aaKnown RBP11□□□□□ -0.65
COL9A1-209ENST00000489861 TRAK1Q9UPV9 953 aa11□□□□□ -0.65
COL9A1-209ENST00000489861 AXIN2Q9Y2T1 843 aa11□□□□□ -0.65
COL9A1-209ENST00000489861 POLR3AO14802 1390 aaPredicted RBP11□□□□□ -0.65
COL9A1-209ENST00000489861 USP6P35125 1406 aa11□□□□□ -0.65
COL9A1-209ENST00000489861 ADGRB1O14514 1584 aa10.99□□□□□ -0.65
COL9A1-209ENST00000489861 KCNQ4P56696 695 aa10.99□□□□□ -0.65
COL9A1-209ENST00000489861 ACEP12821 1306 aa10.99□□□□□ -0.65
COL9A1-209ENST00000489861 WDR17Q8IZU2 1322 aa10.99□□□□□ -0.65
COL9A1-209ENST00000489861 EXOC5O00471 708 aa10.98□□□□□ -0.65
COL9A1-209ENST00000489861 TFCP2L1Q9NZI6 479 aa10.98□□□□□ -0.65
COL9A1-209ENST00000489861 BRD4O60885 1362 aaPredicted RBP10.98□□□□□ -0.65
COL9A1-209ENST00000489861 NLRP13Q86W25 1043 aa10.97□□□□□ -0.65
COL9A1-209ENST00000489861 NMRK2Q9NPI5 230 aa10.97□□□□□ -0.65
COL9A1-209ENST00000489861 TNS2Q63HR2 1409 aa10.97□□□□□ -0.65
COL9A1-209ENST00000489861 HSPA1AP0DMV8 641 aaKnown RBP10.96□□□□□ -0.65
COL9A1-209ENST00000489861 HSPA1BP0DMV9 641 aaKnown RBP10.96□□□□□ -0.65
COL9A1-209ENST00000489861 MSL1Q68DK7 614 aa10.96□□□□□ -0.65
COL9A1-209ENST00000489861 CD2APQ9Y5K6 639 aa10.96□□□□□ -0.65
COL9A1-209ENST00000489861 TRPM1Q7Z4N2 1603 aa10.95□□□□□ -0.66
COL9A1-209ENST00000489861 MAPK8IP2Q13387 824 aaPredicted RBP10.95□□□□□ -0.66
COL9A1-209ENST00000489861 COL23A1Q86Y22 540 aaPredicted RBP10.95□□□□□ -0.66
COL9A1-209ENST00000489861 RBM46Q8TBY0 533 aaKnown RBP10.95□□□□□ -0.66
COL9A1-209ENST00000489861 CARD10Q9BWT7 1032 aa10.95□□□□□ -0.66
COL9A1-209ENST00000489861 CICQ96RK0 1608 aaPredicted RBP10.95□□□□□ -0.66
COL9A1-209ENST00000489861 SLIT3O75094 1523 aa10.94□□□□□ -0.66
COL9A1-209ENST00000489861 ABCC6O95255 1503 aa10.94□□□□□ -0.66
COL9A1-209ENST00000489861 SLC27A3Q5K4L6 730 aa10.94□□□□□ -0.66
COL9A1-209ENST00000489861 LY75O60449 1722 aa10.94□□□□□ -0.66
COL9A1-209ENST00000489861 PLEKHG3A1L390 1219 aa10.93□□□□□ -0.66
COL9A1-209ENST00000489861 IGSF1Q8N6C5 1336 aa10.92□□□□□ -0.66
COL9A1-209ENST00000489861 PPIP5K1Q6PFW1 1433 aa10.92□□□□□ -0.66
COL9A1-209ENST00000489861 PIK3C2AO00443 1686 aa10.92□□□□□ -0.66
COL9A1-209ENST00000489861 FAM161AQ3B820 660 aa10.91□□□□□ -0.66
COL9A1-209ENST00000489861 CDK19Q9BWU1 502 aa10.91□□□□□ -0.66
COL9A1-209ENST00000489861 NLRP6P59044 892 aa10.9□□□□□ -0.66
COL9A1-209ENST00000489861 FSTL1Q12841 308 aa10.9□□□□□ -0.66
COL9A1-209ENST00000489861 CCDC61Q9Y6R9 512 aa10.9□□□□□ -0.66
COL9A1-209ENST00000489861 CPSF1Q10570 1443 aaKnown RBP10.9□□□□□ -0.66
COL9A1-209ENST00000489861 PDE4DIPQ5VU43 2346 aa10.89□□□□□ -0.67
COL9A1-209ENST00000489861 CSB-PGBD3P0DP91 1061 aa10.89□□□□□ -0.67
COL9A1-209ENST00000489861 CCDC7Q96M83 1385 aa10.89□□□□□ -0.67
COL9A1-209ENST00000489861 ARHGEF25Q86VW2 580 aa10.88□□□□□ -0.67
COL9A1-209ENST00000489861 QRICH2Q9H0J4 1663 aa10.88□□□□□ -0.67
COL9A1-209ENST00000489861 USP54Q70EL1 1684 aa10.87□□□□□ -0.67
COL9A1-209ENST00000489861 KIAA1551Q9HCM1 1747 aa10.87□□□□□ -0.67
COL9A1-209ENST00000489861 N4BP2Q86UW6 1770 aaPredicted RBP10.86□□□□□ -0.67
COL9A1-209ENST00000489861 C16orf71Q8IYS4 520 aaPredicted RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms