RNA–Protein interactions for RNA: ENST00000489406.1

UFD1-209, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 2

Gene UFD1, Length 994 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-209ENST00000489406 GRIN3BO60391 1043 aa22.68■■□□□ 1.22
UFD1-209ENST00000489406 YBX3P16989 372 aaKnown RBP eCLIP22.67■■□□□ 1.224e-15■■□□□ 11.4
UFD1-209ENST00000489406 ZNF526Q8TF50 670 aaPredicted RBP22.67■■□□□ 1.22
UFD1-209ENST00000489406 POLD1P28340 1107 aa22.64■■□□□ 1.21
UFD1-209ENST00000489406 TRAK1Q9UPV9 953 aa22.64■■□□□ 1.21
UFD1-209ENST00000489406 BCL9O00512 1426 aa22.64■■□□□ 1.21
UFD1-209ENST00000489406 AATKQ6ZMQ8 1374 aa22.63■■□□□ 1.21
UFD1-209ENST00000489406 ZBTB7CA1YPR0 619 aa22.63■■□□□ 1.21
UFD1-209ENST00000489406 COL13A1Q5TAT6 717 aaPredicted RBP22.63■■□□□ 1.21
UFD1-209ENST00000489406 ABTB2Q8N961 1025 aa22.63■■□□□ 1.21
UFD1-209ENST00000489406 ZNF827Q17R98 1081 aa22.62■■□□□ 1.21
UFD1-209ENST00000489406 TOM1L2Q6ZVM7 507 aa22.62■■□□□ 1.21
UFD1-209ENST00000489406 GCP02774 474 aa22.6■■□□□ 1.21
UFD1-209ENST00000489406 NUDT16Q96DE0 195 aaKnown RBP22.6■■□□□ 1.21
UFD1-209ENST00000489406 USP19O94966 1318 aa22.58■■□□□ 1.21
UFD1-209ENST00000489406 AKAP12Q02952 1782 aa22.58■■□□□ 1.21
UFD1-209ENST00000489406 DNAJC5GQ8N7S2 189 aa22.58■■□□□ 1.21
UFD1-209ENST00000489406 SLC16A10Q8TF71 515 aa22.58■■□□□ 1.21
UFD1-209ENST00000489406 APLP1P51693 650 aa22.57■■□□□ 1.2
UFD1-209ENST00000489406 PAPPAQ13219 1627 aa22.57■■□□□ 1.2
UFD1-209ENST00000489406 TOPAZ1Q8N9V7 1692 aa22.56■■□□□ 1.2
UFD1-209ENST00000489406 ACEP12821 1306 aa22.56■■□□□ 1.2
UFD1-209ENST00000489406 PRELPP51888 382 aa22.55■■□□□ 1.2
UFD1-209ENST00000489406 ITSN1Q15811 1721 aa22.54■■□□□ 1.2
UFD1-209ENST00000489406 NLRP13Q86W25 1043 aa22.54■■□□□ 1.2
UFD1-209ENST00000489406 CDCA7Q9BWT1 371 aaPredicted RBP22.54■■□□□ 1.2
UFD1-209ENST00000489406 ADCY9O60503 1353 aa22.53■■□□□ 1.2
UFD1-209ENST00000489406 TNS4Q8IZW8 715 aa22.53■■□□□ 1.2
UFD1-209ENST00000489406 ACSBG1Q96GR2 724 aa22.53■■□□□ 1.2
UFD1-209ENST00000489406 POLR3AO14802 1390 aaPredicted RBP22.51■■□□□ 1.19
UFD1-209ENST00000489406 EXOC5O00471 708 aa22.51■■□□□ 1.19
UFD1-209ENST00000489406 LRRC4BQ9NT99 713 aa22.51■■□□□ 1.19
UFD1-209ENST00000489406 WNK3Q9BYP7 1800 aa22.51■■□□□ 1.19
UFD1-209ENST00000489406 KIF3CO14782 793 aa22.5■■□□□ 1.19
UFD1-209ENST00000489406 AKT1S1Q96B36 256 aa22.49■■□□□ 1.19
UFD1-209ENST00000489406 ADGRB1O14514 1584 aa22.49■■□□□ 1.19
UFD1-209ENST00000489406 WDR17Q8IZU2 1322 aa22.49■■□□□ 1.19
UFD1-209ENST00000489406 PNPLA7Q6ZV29 1317 aa22.48■■□□□ 1.19
UFD1-209ENST00000489406 COL24A1Q17RW2 1714 aa22.48■■□□□ 1.19
UFD1-209ENST00000489406 PPARGC1BQ86YN6 1023 aaKnown RBP22.47■■□□□ 1.19
UFD1-209ENST00000489406 NHSQ6T4R5 1651 aa22.46■■□□□ 1.19
UFD1-209ENST00000489406 SLC34A2O95436 690 aa22.46■■□□□ 1.19
UFD1-209ENST00000489406 AXIN2Q9Y2T1 843 aa22.46■■□□□ 1.19
UFD1-209ENST00000489406 CDK19Q9BWU1 502 aa22.45■■□□□ 1.18
UFD1-209ENST00000489406 BRD4O60885 1362 aaPredicted RBP22.44■■□□□ 1.18
UFD1-209ENST00000489406 PLEKHG3A1L390 1219 aa22.43■■□□□ 1.18
UFD1-209ENST00000489406 TFCP2L1Q9NZI6 479 aa22.43■■□□□ 1.18
UFD1-209ENST00000489406 CCDC61Q9Y6R9 512 aa22.43■■□□□ 1.18
UFD1-209ENST00000489406 USP6P35125 1406 aa22.42■■□□□ 1.18
UFD1-209ENST00000489406 CARD10Q9BWT7 1032 aa22.42■■□□□ 1.18
UFD1-209ENST00000489406 CSB-PGBD3P0DP91 1061 aa22.41■■□□□ 1.18
UFD1-209ENST00000489406 QSER1Q2KHR3 1735 aa22.4■■□□□ 1.18
UFD1-209ENST00000489406 MPHOSPH9Q99550 1183 aa22.4■■□□□ 1.18
UFD1-209ENST00000489406 BTAF1O14981 1849 aa22.39■■□□□ 1.17
UFD1-209ENST00000489406 NLRP6P59044 892 aa22.39■■□□□ 1.17
UFD1-209ENST00000489406 COL18A1P39060 1754 aa22.39■■□□□ 1.17
UFD1-209ENST00000489406 TNS2Q63HR2 1409 aa22.39■■□□□ 1.17
UFD1-209ENST00000489406 TOMM70O94826 608 aa22.37■■□□□ 1.17
UFD1-209ENST00000489406 KLRG1Q96E93 195 aa22.37■■□□□ 1.17
UFD1-209ENST00000489406 MSH5O43196 834 aa22.36■■□□□ 1.17
UFD1-209ENST00000489406 KCNQ4P56696 695 aa22.36■■□□□ 1.17
UFD1-209ENST00000489406 HTRA3P83110 453 aa22.36■■□□□ 1.17
UFD1-209ENST00000489406 SLC27A3Q5K4L6 730 aa22.36■■□□□ 1.17
UFD1-209ENST00000489406 JMYQ8N9B5 988 aa22.36■■□□□ 1.17
UFD1-209ENST00000489406 ARHGEF28Q8N1W1 1705 aaKnown RBP22.34■■□□□ 1.17
UFD1-209ENST00000489406 TUBGCP6Q96RT7 1819 aa22.34■■□□□ 1.17
UFD1-209ENST00000489406 MSL1Q68DK7 614 aa22.34■■□□□ 1.17
UFD1-209ENST00000489406 SLIT3O75094 1523 aa22.34■■□□□ 1.17
UFD1-209ENST00000489406 WWC3Q9ULE0 1092 aa22.33■■□□□ 1.17
UFD1-209ENST00000489406 CD2APQ9Y5K6 639 aa22.33■■□□□ 1.17
UFD1-209ENST00000489406 KAT6BQ8WYB5 2073 aa22.32■■□□□ 1.16
UFD1-209ENST00000489406 WDR90Q96KV7 1748 aa22.32■■□□□ 1.16
UFD1-209ENST00000489406 CCDC7Q96M83 1385 aa22.31■■□□□ 1.16
UFD1-209ENST00000489406 CPSF1Q10570 1443 aaKnown RBP22.31■■□□□ 1.16
UFD1-209ENST00000489406 RGPD5Q99666 1765 aa22.3■■□□□ 1.16
UFD1-209ENST00000489406 PPIP5K1Q6PFW1 1433 aa22.3■■□□□ 1.16
UFD1-209ENST00000489406 ARHGEF25Q86VW2 580 aa22.29■■□□□ 1.16
UFD1-209ENST00000489406 COL23A1Q86Y22 540 aaPredicted RBP22.29■■□□□ 1.16
UFD1-209ENST00000489406 KDM2AQ9Y2K7 1162 aa22.29■■□□□ 1.16
UFD1-209ENST00000489406 ABCC6O95255 1503 aa22.28■■□□□ 1.16
UFD1-209ENST00000489406 SOX12O15370 315 aa22.27■■□□□ 1.16
UFD1-209ENST00000489406 TRPM1Q7Z4N2 1603 aa22.27■■□□□ 1.16
UFD1-209ENST00000489406 NMRK2Q9NPI5 230 aa22.23■■□□□ 1.15
UFD1-209ENST00000489406 PCNTO95613 3336 aa22.23■■□□□ 1.15
UFD1-209ENST00000489406 IGSF1Q8N6C5 1336 aa22.23■■□□□ 1.15
UFD1-209ENST00000489406 SRPK2P78362 688 aaKnown RBP22.22■■□□□ 1.15
UFD1-209ENST00000489406 IL2RBP14784 551 aa22.21■■□□□ 1.15
UFD1-209ENST00000489406 RBM46Q8TBY0 533 aaKnown RBP22.2■■□□□ 1.14
UFD1-209ENST00000489406 DCAF11Q8TEB1 546 aa22.2■■□□□ 1.14
UFD1-209ENST00000489406 KCNH5Q8NCM2 988 aa22.19■■□□□ 1.14
UFD1-209ENST00000489406 SYTL4Q96C24 671 aaPredicted RBP22.19■■□□□ 1.14
UFD1-209ENST00000489406 NLRP2Q9NX02 1062 aa22.19■■□□□ 1.14
UFD1-209ENST00000489406 PIK3C2AO00443 1686 aa22.18■■□□□ 1.14
UFD1-209ENST00000489406 CABP2Q9NPB3 220 aa22.18■■□□□ 1.14
UFD1-209ENST00000489406 CABP1Q9NZU7 370 aa22.17■■□□□ 1.14
UFD1-209ENST00000489406 PCDH10Q9P2E7 1040 aa22.17■■□□□ 1.14
UFD1-209ENST00000489406 CCNL1Q9UK58 526 aaPredicted RBP22.17■■□□□ 1.14
UFD1-209ENST00000489406 C16orf71Q8IYS4 520 aaPredicted RBP22.16■■□□□ 1.14
UFD1-209ENST00000489406 DDX54Q8TDD1 881 aaKnown RBP22.16■■□□□ 1.14
UFD1-209ENST00000489406 HSPA1AP0DMV8 641 aaKnown RBP22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms