RNA–Protein interactions for RNA: ENST00000489215.5

PTPN18-213, Transcript of protein tyrosine phosphatase, non-receptor type 18, human

TSL 4

Gene PTPN18, Length 460 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN18-213	ENST00000489215	CRB1	P82279	1406 aa		33.37	■■■□□ 2.93
PTPN18-213	ENST00000489215	COL18A1	P39060	1754 aa		33.37	■■■□□ 2.93
PTPN18-213	ENST00000489215	ZRANB1	Q9UGI0	708 aa		33.37	■■■□□ 2.93
PTPN18-213	ENST00000489215	COG3	Q96JB2	828 aa		33.36	■■■□□ 2.93
PTPN18-213	ENST00000489215	THSD7A	Q9UPZ6	1657 aa		33.36	■■■□□ 2.93
PTPN18-213	ENST00000489215	TOM1L2	Q6ZVM7	507 aa		33.33	■■■□□ 2.93
PTPN18-213	ENST00000489215	AXIN2	Q9Y2T1	843 aa		33.33	■■■□□ 2.93
PTPN18-213	ENST00000489215	OVOS2	A0A0J9YW53	1432 aa		33.33	■■■□□ 2.93
PTPN18-213	ENST00000489215	OVOS2	Q6IE36	1432 aa		33.33	■■■□□ 2.93
PTPN18-213	ENST00000489215	WDR17	Q8IZU2	1322 aa		33.32	■■■□□ 2.93
PTPN18-213	ENST00000489215	HSPA5	P11021	654 aa	Known RBP	33.32	■■■□□ 2.92
PTPN18-213	ENST00000489215	BLM	P54132	1417 aa	Predicted RBP	33.31	■■■□□ 2.92
PTPN18-213	ENST00000489215	SF3B2	Q13435	895 aa	Known RBP	33.31	■■■□□ 2.92
PTPN18-213	ENST00000489215	CSB-PGBD3	P0DP91	1061 aa		33.28	■■■□□ 2.92
PTPN18-213	ENST00000489215	PDE3B	Q13370	1112 aa		33.27	■■■□□ 2.92
PTPN18-213	ENST00000489215	LTN1	O94822	1766 aa		33.26	■■■□□ 2.92
PTPN18-213	ENST00000489215	RGPD5	Q99666	1765 aa		33.26	■■■□□ 2.92
PTPN18-213	ENST00000489215	CDCA7	Q9BWT1	371 aa	Predicted RBP	33.26	■■■□□ 2.91
PTPN18-213	ENST00000489215	FYB1	O15117	783 aa		33.24	■■■□□ 2.91
PTPN18-213	ENST00000489215	CARD10	Q9BWT7	1032 aa		33.24	■■■□□ 2.91
PTPN18-213	ENST00000489215	MYOM1	P52179	1685 aa		33.23	■■■□□ 2.91
PTPN18-213	ENST00000489215	C11orf95	C9JLR9	678 aa	Predicted RBP	33.23	■■■□□ 2.91
PTPN18-213	ENST00000489215	FAM196A	Q6ZSG2	479 aa		33.23	■■■□□ 2.91
PTPN18-213	ENST00000489215	EP400	Q96L91	3159 aa		33.23	■■■□□ 2.91
PTPN18-213	ENST00000489215	POLR3GL	Q9BT43	218 aa		33.2	■■■□□ 2.91
PTPN18-213	ENST00000489215	CCDC7	Q96M83	1385 aa		33.2	■■■□□ 2.9
PTPN18-213	ENST00000489215	PARP4	Q9UKK3	1724 aa	Known RBP	33.19	■■■□□ 2.9
PTPN18-213	ENST00000489215	IP6K1	Q92551	441 aa		33.19	■■■□□ 2.9
PTPN18-213	ENST00000489215	GGNBP2	Q9H3C7	697 aa		33.18	■■■□□ 2.9
PTPN18-213	ENST00000489215	ERBB3	P21860	1342 aa		33.18	■■■□□ 2.9
PTPN18-213	ENST00000489215	CARD14	Q9BXL6	1004 aa		33.17	■■■□□ 2.9
PTPN18-213	ENST00000489215	KIF20B	Q96Q89	1820 aa		33.16	■■■□□ 2.9
PTPN18-213	ENST00000489215	DDB1	Q16531	1140 aa		33.15	■■■□□ 2.9
PTPN18-213	ENST00000489215	NSD3	Q9BZ95	1437 aa		33.15	■■■□□ 2.9
PTPN18-213	ENST00000489215	CGNL1	Q0VF96	1302 aa		33.14	■■■□□ 2.9
PTPN18-213	ENST00000489215	BAG6	P46379	1132 aa		33.14	■■■□□ 2.9
PTPN18-213	ENST00000489215	AMPH	P49418	695 aa		33.14	■■■□□ 2.9
PTPN18-213	ENST00000489215	ANKRD24	Q8TF21	1146 aa		33.14	■■■□□ 2.9
PTPN18-213	ENST00000489215	FAM182B	Q5T319	152 aa		33.13	■■■□□ 2.89
PTPN18-213	ENST00000489215	RGPD1	P0DJD0	1748 aa		33.12	■■■□□ 2.89
PTPN18-213	ENST00000489215	NLRP2	Q9NX02	1062 aa		33.12	■■■□□ 2.89
PTPN18-213	ENST00000489215	MAP3K19	Q56UN5	1328 aa		33.11	■■■□□ 2.89
PTPN18-213	ENST00000489215	RTL1	A6NKG5	1358 aa		33.09	■■■□□ 2.89
PTPN18-213	ENST00000489215	WNK3	Q9BYP7	1800 aa		33.09	■■■□□ 2.89
PTPN18-213	ENST00000489215	HOXC9	P31274	260 aa		33.08	■■■□□ 2.89
PTPN18-213	ENST00000489215	FAM208A	Q9UK61	1670 aa	Known RBP	33.07	■■■□□ 2.89
PTPN18-213	ENST00000489215	EXOC5	O00471	708 aa		33.07	■■■□□ 2.88
PTPN18-213	ENST00000489215	KIF24	Q5T7B8	1368 aa		33.07	■■■□□ 2.88
PTPN18-213	ENST00000489215	DEFB132	Q7Z7B7	95 aa		33.05	■■■□□ 2.88
PTPN18-213	ENST00000489215	OVOS2	A0A0G2JMS6	1433 aa		33.04	■■■□□ 2.88
PTPN18-213	ENST00000489215	DISP2	A7MBM2	1401 aa		33.04	■■■□□ 2.88
PTPN18-213	ENST00000489215	LRRC37A3	O60309	1634 aa		33.04	■■■□□ 2.88
PTPN18-213	ENST00000489215	PANK3	Q9H999	370 aa		33.03	■■■□□ 2.88
PTPN18-213	ENST00000489215	TRIM37	O94972	964 aa		33.02	■■■□□ 2.88
PTPN18-213	ENST00000489215	IL2RB	P14784	551 aa		33.02	■■■□□ 2.88
PTPN18-213	ENST00000489215	FBLN1	P23142	703 aa		33.02	■■■□□ 2.88
PTPN18-213	ENST00000489215	RRS1	Q15050	365 aa	Known RBP	33.02	■■■□□ 2.88
PTPN18-213	ENST00000489215	LTV1	Q96GA3	475 aa	Predicted RBP	33	■■■□□ 2.87
PTPN18-213	ENST00000489215	SMG6	Q86US8	1419 aa	Known RBP	32.99	■■■□□ 2.87
PTPN18-213	ENST00000489215	FLT4	P35916	1363 aa		32.97	■■■□□ 2.87
PTPN18-213	ENST00000489215	TNS1	Q9HBL0	1735 aa	Known RBP	32.97	■■■□□ 2.87
PTPN18-213	ENST00000489215	BCL9	O00512	1426 aa		32.96	■■■□□ 2.87
PTPN18-213	ENST00000489215	NSD2	O96028	1365 aa		32.96	■■■□□ 2.87
PTPN18-213	ENST00000489215	INSR	P06213	1382 aa		32.96	■■■□□ 2.87
PTPN18-213	ENST00000489215	APBA3	O96018	575 aa		32.95	■■■□□ 2.87
PTPN18-213	ENST00000489215	TNS2	Q63HR2	1409 aa		32.94	■■■□□ 2.86
PTPN18-213	ENST00000489215	MARCH10	Q8NA82	808 aa	Predicted RBP	32.94	■■■□□ 2.86
PTPN18-213	ENST00000489215	PARD3	Q8TEW0	1356 aa		32.94	■■■□□ 2.86
PTPN18-213	ENST00000489215	PEAK1	Q9H792	1746 aa		32.94	■■■□□ 2.86
PTPN18-213	ENST00000489215	EN1	Q05925	392 aa	Predicted RBP	32.93	■■■□□ 2.86
PTPN18-213	ENST00000489215	KNSTRN	Q9Y448	316 aa		32.93	■■■□□ 2.86
PTPN18-213	ENST00000489215	KIF7	Q2M1P5	1343 aa		32.93	■■■□□ 2.86
PTPN18-213	ENST00000489215	ANKRD26	Q9UPS8	1709 aa		32.93	■■■□□ 2.86
PTPN18-213	ENST00000489215	MAP2	P11137	1827 aa	Known RBP	32.89	■■■□□ 2.86
PTPN18-213	ENST00000489215	HSP90AB2P	Q58FF8	381 aa		32.89	■■■□□ 2.86
PTPN18-213	ENST00000489215	SBF2	Q86WG5	1849 aa		32.88	■■■□□ 2.85
PTPN18-213	ENST00000489215	BCL11B	Q9C0K0	894 aa	Predicted RBP	32.88	■■■□□ 2.85
PTPN18-213	ENST00000489215	CAMKK2	Q96RR4	588 aa		32.87	■■■□□ 2.85
PTPN18-213	ENST00000489215	PPM1G	O15355	546 aa	Predicted RBP	32.86	■■■□□ 2.85
PTPN18-213	ENST00000489215	EMILIN1	Q9Y6C2	1016 aa		32.86	■■■□□ 2.85
PTPN18-213	ENST00000489215	WASHC2A	Q641Q2	1341 aa		32.85	■■■□□ 2.85
PTPN18-213	ENST00000489215	EZH2	Q15910	746 aa	Known RBP	32.84	■■■□□ 2.85
PTPN18-213	ENST00000489215	NBPF6	Q5VWK0	638 aa		32.84	■■■□□ 2.85
PTPN18-213	ENST00000489215	NBPF4	Q96M43	638 aa		32.84	■■■□□ 2.85
PTPN18-213	ENST00000489215	POLK	Q9UBT6	870 aa		32.83	■■■□□ 2.85
PTPN18-213	ENST00000489215	RGPD2	P0DJD1	1756 aa		32.83	■■■□□ 2.85
PTPN18-213	ENST00000489215	PLSCR1	O15162	318 aa		32.82	■■■□□ 2.84
PTPN18-213	ENST00000489215	MORC1	Q86VD1	984 aa		32.82	■■■□□ 2.84
PTPN18-213	ENST00000489215	RAPGEF4	Q8WZA2	1011 aa		32.82	■■■□□ 2.84
PTPN18-213	ENST00000489215	TNNT2	P45379	298 aa	Predicted RBP	32.79	■■■□□ 2.84
PTPN18-213	ENST00000489215	ZCRB1	Q8TBF4	217 aa	Known RBP	32.78	■■■□□ 2.84
PTPN18-213	ENST00000489215	TAT	P17735	454 aa	Predicted RBP	32.77	■■■□□ 2.84
PTPN18-213	ENST00000489215	RGPD3	A6NKT7	1758 aa	Predicted RBP	32.76	■■■□□ 2.84
PTPN18-213	ENST00000489215	RGPD4	Q7Z3J3	1758 aa		32.76	■■■□□ 2.84
PTPN18-213	ENST00000489215	DDX54	Q8TDD1	881 aa	Known RBP	32.76	■■■□□ 2.83
PTPN18-213	ENST00000489215	NBPF14	Q5TI25	921 aa		32.74	■■■□□ 2.83
PTPN18-213	ENST00000489215	AMER1	Q5JTC6	1135 aa	Predicted RBP	32.73	■■■□□ 2.83
PTPN18-213	ENST00000489215	USHBP1	Q8N6Y0	703 aa		32.72	■■■□□ 2.83
PTPN18-213	ENST00000489215	RREB1	Q92766	1687 aa		32.72	■■■□□ 2.83
PTPN18-213	ENST00000489215	PER1	O15534	1290 aa	Predicted RBP	32.71	■■■□□ 2.83

Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms