RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 AMPHP49418 695 aa21.18■□□□□ 0.98
SYNE1-227ENST00000489156 ILDR1Q86SU0 546 aaPredicted RBP21.18■□□□□ 0.98
SYNE1-227ENST00000489156 PEAK1Q9H792 1746 aa21.17■□□□□ 0.98
SYNE1-227ENST00000489156 RGPD5Q99666 1765 aa21.17■□□□□ 0.98
SYNE1-227ENST00000489156 CPDO75976 1380 aa21.17■□□□□ 0.98
SYNE1-227ENST00000489156 LRP6O75581 1613 aa21.17■□□□□ 0.98
SYNE1-227ENST00000489156 BLMP54132 1417 aaPredicted RBP21.17■□□□□ 0.98
SYNE1-227ENST00000489156 FAM83GA6ND36 823 aa21.16■□□□□ 0.98
SYNE1-227ENST00000489156 ADAMTS8Q9UP79 889 aa21.15■□□□□ 0.98
SYNE1-227ENST00000489156 COL18A1P39060 1754 aa21.15■□□□□ 0.98
SYNE1-227ENST00000489156 CFAP53Q96M91 514 aa21.15■□□□□ 0.98
SYNE1-227ENST00000489156 HOXC9P31274 260 aa21.14■□□□□ 0.97
SYNE1-227ENST00000489156 AXIN2Q9Y2T1 843 aa21.14■□□□□ 0.97
SYNE1-227ENST00000489156 SMG6Q86US8 1419 aaKnown RBP21.14■□□□□ 0.97
SYNE1-227ENST00000489156 IP6K1Q92551 441 aa21.13■□□□□ 0.97
SYNE1-227ENST00000489156 HSP90AB2PQ58FF8 381 aa21.13■□□□□ 0.97
SYNE1-227ENST00000489156 FLT4P35916 1363 aa21.12■□□□□ 0.97
SYNE1-227ENST00000489156 COL14A1Q05707 1796 aaKnown RBP21.12■□□□□ 0.97
SYNE1-227ENST00000489156 KIF24Q5T7B8 1368 aa21.11■□□□□ 0.97
SYNE1-227ENST00000489156 MEX3CQ5U5Q3 659 aaKnown RBP21.11■□□□□ 0.97
SYNE1-227ENST00000489156 C8orf37Q96NL8 207 aa21.11■□□□□ 0.97
SYNE1-227ENST00000489156 RTL1A6NKG5 1358 aa21.1■□□□□ 0.97
SYNE1-227ENST00000489156 LMO7Q8WWI1 1683 aa21.1■□□□□ 0.97
SYNE1-227ENST00000489156 CDK12Q9NYV4 1490 aaPredicted RBP21.1■□□□□ 0.97
SYNE1-227ENST00000489156 GTF3C3Q9Y5Q9 886 aa21.1■□□□□ 0.97
SYNE1-227ENST00000489156 CAMTA1Q9Y6Y1 1673 aa21.09■□□□□ 0.97
SYNE1-227ENST00000489156 PLCH1Q4KWH8 1693 aa21.09■□□□□ 0.97
SYNE1-227ENST00000489156 NGLY1Q96IV0 654 aa21.09■□□□□ 0.97
SYNE1-227ENST00000489156 BTG4Q9NY30 223 aa21.09■□□□□ 0.97
SYNE1-227ENST00000489156 LTV1Q96GA3 475 aaPredicted RBP21.08■□□□□ 0.97
SYNE1-227ENST00000489156 ABCC6O95255 1503 aa21.06■□□□□ 0.96
SYNE1-227ENST00000489156 COL3A1P02461 1466 aaPredicted RBP21.05■□□□□ 0.96
SYNE1-227ENST00000489156 RGPD2P0DJD1 1756 aa21.05■□□□□ 0.96
SYNE1-227ENST00000489156 PDE3BQ13370 1112 aa21.05■□□□□ 0.96
SYNE1-227ENST00000489156 EIF4A2Q14240 407 aaKnown RBP21.05■□□□□ 0.96
SYNE1-227ENST00000489156 NGEFQ8N5V2 710 aa21.05■□□□□ 0.96
SYNE1-227ENST00000489156 ANKRD24Q8TF21 1146 aa21.05■□□□□ 0.96
SYNE1-227ENST00000489156 STRN4Q9NRL3 753 aa21.05■□□□□ 0.96
SYNE1-227ENST00000489156 DIAPH1O60610 1272 aaKnown RBP21.04■□□□□ 0.96
SYNE1-227ENST00000489156 SLIT2O94813 1529 aa21.04■□□□□ 0.96
SYNE1-227ENST00000489156 NWD2Q9ULI1 1742 aa21.03■□□□□ 0.96
SYNE1-227ENST00000489156 EVA1CP58658 441 aa21.03■□□□□ 0.96
SYNE1-227ENST00000489156 COL5A2P05997 1499 aaPredicted RBP21.03■□□□□ 0.96
SYNE1-227ENST00000489156 ERBB3P21860 1342 aa21.03■□□□□ 0.96
SYNE1-227ENST00000489156 NUDCQ9Y266 331 aa21.03■□□□□ 0.96
SYNE1-227ENST00000489156 CSB-PGBD3P0DP91 1061 aa21.02■□□□□ 0.96
SYNE1-227ENST00000489156 IL13P35225 146 aa21.02■□□□□ 0.96
SYNE1-227ENST00000489156 FNBP4Q8N3X1 1017 aaPredicted RBP21.02■□□□□ 0.96
SYNE1-227ENST00000489156 NRAPQ86VF7 1730 aa21.01■□□□□ 0.95
SYNE1-227ENST00000489156 AFF2P51816 1311 aa21■□□□□ 0.95
SYNE1-227ENST00000489156 BCL9LQ86UU0 1499 aa21■□□□□ 0.95
SYNE1-227ENST00000489156 LARP1Q6PKG0 1096 aaKnown RBP20.99■□□□□ 0.95
SYNE1-227ENST00000489156 USP21Q9UK80 565 aa20.99■□□□□ 0.95
SYNE1-227ENST00000489156 U2SURPO15042 1029 aaKnown RBP20.98■□□□□ 0.95
SYNE1-227ENST00000489156 UNC5CLQ8IV45 518 aa20.98■□□□□ 0.95
SYNE1-227ENST00000489156 WDR17Q8IZU2 1322 aa20.98■□□□□ 0.95
SYNE1-227ENST00000489156 NBPF6Q5VWK0 638 aa20.98■□□□□ 0.95
SYNE1-227ENST00000489156 TOM1L2Q6ZVM7 507 aa20.98■□□□□ 0.95
SYNE1-227ENST00000489156 NBPF4Q96M43 638 aa20.98■□□□□ 0.95
SYNE1-227ENST00000489156 EYA1Q99502 592 aa20.98■□□□□ 0.95
SYNE1-227ENST00000489156 NLRP2Q9NX02 1062 aa20.98■□□□□ 0.95
SYNE1-227ENST00000489156 FAM208AQ9UK61 1670 aaKnown RBP20.97■□□□□ 0.95
SYNE1-227ENST00000489156 RUNDC1Q96C34 613 aa20.96■□□□□ 0.95
SYNE1-227ENST00000489156 RGPD1P0DJD0 1748 aa20.96■□□□□ 0.95
SYNE1-227ENST00000489156 USHBP1Q8N6Y0 703 aa20.96■□□□□ 0.95
SYNE1-227ENST00000489156 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.95■□□□□ 0.94
SYNE1-227ENST00000489156 U2AF1L5P0DN76 240 aaPredicted RBP20.94■□□□□ 0.94
SYNE1-227ENST00000489156 U2AF1Q01081 240 aaKnown RBP eCLIP20.94■□□□□ 0.94
SYNE1-227ENST00000489156 NCBP3Q53F19 620 aaKnown RBP20.94■□□□□ 0.94
SYNE1-227ENST00000489156 CCDC146Q8IYE0 955 aa20.94■□□□□ 0.94
SYNE1-227ENST00000489156 USP35Q9P2H5 1018 aa20.94■□□□□ 0.94
SYNE1-227ENST00000489156 APAF1O14727 1248 aa20.94■□□□□ 0.94
SYNE1-227ENST00000489156 SALL2Q9Y467 1007 aaPredicted RBP20.94■□□□□ 0.94
SYNE1-227ENST00000489156 CRB1P82279 1406 aa20.94■□□□□ 0.94
SYNE1-227ENST00000489156 IGSF1Q8N6C5 1336 aa20.93■□□□□ 0.94
SYNE1-227ENST00000489156 SENP3-EIF4A1A0A087X0R7 540 aa20.93■□□□□ 0.94
SYNE1-227ENST00000489156 HMOX1P09601 288 aa20.93■□□□□ 0.94
SYNE1-227ENST00000489156 PNNQ9H307 717 aaKnown RBP20.93■□□□□ 0.94
SYNE1-227ENST00000489156 CCDC9Q9Y3X0 531 aaKnown RBP20.93■□□□□ 0.94
SYNE1-227ENST00000489156 ZNF521Q96K83 1311 aa20.93■□□□□ 0.94
SYNE1-227ENST00000489156 SULT6B1Q6IMI4 303 aa20.92■□□□□ 0.94
SYNE1-227ENST00000489156 AEBP1Q8IUX7 1158 aa20.92■□□□□ 0.94
SYNE1-227ENST00000489156 CARD10Q9BWT7 1032 aa20.92■□□□□ 0.94
SYNE1-227ENST00000489156 VPS72Q15906 364 aa20.91■□□□□ 0.94
SYNE1-227ENST00000489156 QTRT2Q9H974 415 aaKnown RBP20.9■□□□□ 0.94
SYNE1-227ENST00000489156 SPATA31A1Q5TZJ5 1347 aa20.89■□□□□ 0.94
SYNE1-227ENST00000489156 SPATA31A5Q5VU36 1347 aa20.89■□□□□ 0.94
SYNE1-227ENST00000489156 SPATA31A7Q8IWB4 1347 aa20.89■□□□□ 0.94
SYNE1-227ENST00000489156 FCHSD2O94868 740 aa20.88■□□□□ 0.93
SYNE1-227ENST00000489156 TRPC5Q9UL62 973 aaPredicted RBP20.88■□□□□ 0.93
SYNE1-227ENST00000489156 SUPT16HQ9Y5B9 1047 aaKnown RBP20.88■□□□□ 0.93
SYNE1-227ENST00000489156 NEFLP07196 543 aa20.88■□□□□ 0.93
SYNE1-227ENST00000489156 ZNF772Q68DY9 489 aaPredicted RBP20.88■□□□□ 0.93
SYNE1-227ENST00000489156 GOLGA2Q08379 1002 aa20.87■□□□□ 0.93
SYNE1-227ENST00000489156 TCP11L2Q8N4U5 519 aa20.87■□□□□ 0.93
SYNE1-227ENST00000489156 PHF23Q9BUL5 403 aaPredicted RBP20.87■□□□□ 0.93
SYNE1-227ENST00000489156 RGS17Q9UGC6 210 aaPredicted RBP20.87■□□□□ 0.93
SYNE1-227ENST00000489156 ATRNO75882 1429 aa20.87■□□□□ 0.93
SYNE1-227ENST00000489156 NCAPD2Q15021 1401 aa20.87■□□□□ 0.93
SYNE1-227ENST00000489156 KDRP35968 1356 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms