RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TUSC1Q2TAM9 212 aa9.63□□□□□ -0.87
SMC4-220ENST00000488017 PLA2G4EQ3MJ16 856 aa9.63□□□□□ -0.87
SMC4-220ENST00000488017 C1QTNF2Q9BXJ5 285 aa9.63□□□□□ -0.87
SMC4-220ENST00000488017 MAP4K5Q9Y4K4 846 aa9.63□□□□□ -0.87
SMC4-220ENST00000488017 CABLES1Q8TDN4 633 aa9.62□□□□□ -0.87
SMC4-220ENST00000488017 KRTAP9-2Q9BYQ4 174 aa9.62□□□□□ -0.87
SMC4-220ENST00000488017 SLC35F4A4IF30 521 aa9.61□□□□□ -0.87
SMC4-220ENST00000488017 TRIM66O15016 1216 aa9.61□□□□□ -0.87
SMC4-220ENST00000488017 PER1O15534 1290 aaPredicted RBP9.61□□□□□ -0.87
SMC4-220ENST00000488017 SV2AQ7L0J3 742 aa9.61□□□□□ -0.87
SMC4-220ENST00000488017 VWA5B2Q8N398 1253 aa9.61□□□□□ -0.87
SMC4-220ENST00000488017 PSMG3-AS1Q96PY0 264 aa9.61□□□□□ -0.87
SMC4-220ENST00000488017 ITGB2P05107 769 aa9.6□□□□□ -0.87
SMC4-220ENST00000488017 NBPF14Q5TI25 921 aa9.6□□□□□ -0.87
SMC4-220ENST00000488017 LYPD4Q6UWN0 246 aa9.6□□□□□ -0.87
SMC4-220ENST00000488017 SH3RF1Q7Z6J0 888 aa9.6□□□□□ -0.87
SMC4-220ENST00000488017 TRMT44Q8IYL2 757 aaKnown RBP9.6□□□□□ -0.87
SMC4-220ENST00000488017 FIGNL2A6NMB9 653 aa9.59□□□□□ -0.87
SMC4-220ENST00000488017 ITGA6P23229 1130 aa9.59□□□□□ -0.87
SMC4-220ENST00000488017 DCAF5Q96JK2 942 aa9.59□□□□□ -0.87
SMC4-220ENST00000488017 AK7Q96M32 723 aa9.59□□□□□ -0.87
SMC4-220ENST00000488017 ADAMTS2O95450 1211 aa9.58□□□□□ -0.88
SMC4-220ENST00000488017 MAP3K10Q02779 954 aa9.58□□□□□ -0.88
SMC4-220ENST00000488017 CSPP1Q1MSJ5 1256 aa9.58□□□□□ -0.88
SMC4-220ENST00000488017 EMILIN1Q9Y6C2 1016 aa9.58□□□□□ -0.88
SMC4-220ENST00000488017 NUTM2BA6NNL0 878 aaPredicted RBP9.57□□□□□ -0.88
SMC4-220ENST00000488017 NUTM2EB1AL46 878 aaPredicted RBP9.57□□□□□ -0.88
SMC4-220ENST00000488017 LILRB3O75022 631 aa9.57□□□□□ -0.88
SMC4-220ENST00000488017 PROCP04070 461 aa9.57□□□□□ -0.88
SMC4-220ENST00000488017 FSHRP23945 695 aa9.57□□□□□ -0.88
SMC4-220ENST00000488017 NUTM2DQ5VT03 806 aaPredicted RBP9.57□□□□□ -0.88
SMC4-220ENST00000488017 VASH1Q7L8A9 365 aaPredicted RBP9.57□□□□□ -0.88
SMC4-220ENST00000488017 SH3BP5LQ7L8J4 393 aa9.57□□□□□ -0.88
SMC4-220ENST00000488017 NUTM2AQ8IVF1 878 aaPredicted RBP9.57□□□□□ -0.88
SMC4-220ENST00000488017 KRTAP9-6A0A140TA67 174 aa9.56□□□□□ -0.88
SMC4-220ENST00000488017 CDC14CA4D256 554 aa9.56□□□□□ -0.88
SMC4-220ENST00000488017 MYSM1Q5VVJ2 828 aa9.56□□□□□ -0.88
SMC4-220ENST00000488017 TSC1Q92574 1164 aa9.56□□□□□ -0.88
SMC4-220ENST00000488017 GPKOWQ92917 476 aaPredicted RBP eCLIP9.56□□□□□ -0.88
SMC4-220ENST00000488017 LIMD1Q9UGP4 676 aa9.56□□□□□ -0.88
SMC4-220ENST00000488017 PHF20L1A8MW92 1017 aa9.55□□□□□ -0.88
SMC4-220ENST00000488017 SPINT1O43278 529 aa9.55□□□□□ -0.88
SMC4-220ENST00000488017 CELA2BP08218 269 aaPredicted RBP9.55□□□□□ -0.88
SMC4-220ENST00000488017 SRSF11Q05519 484 aaKnown RBP9.55□□□□□ -0.88
SMC4-220ENST00000488017 QPCTQ16769 361 aa9.55□□□□□ -0.88
SMC4-220ENST00000488017 CCDC116Q8IYX3 515 aa9.55□□□□□ -0.88
SMC4-220ENST00000488017 HELBQ8NG08 1087 aaPredicted RBP9.55□□□□□ -0.88
SMC4-220ENST00000488017 Q8N3U1 123 aa9.54□□□□□ -0.88
SMC4-220ENST00000488017 ENAMQ9NRM1 1142 aa9.54□□□□□ -0.88
SMC4-220ENST00000488017 K7ELQ4 463 aaPredicted RBP9.53□□□□□ -0.88
SMC4-220ENST00000488017 MAGEB6P1A0A0J9YX57 407 aa9.51□□□□□ -0.89
SMC4-220ENST00000488017 Q6ZVU0 165 aa9.51□□□□□ -0.89
SMC4-220ENST00000488017 GALNT6Q8NCL4 622 aa9.51□□□□□ -0.89
SMC4-220ENST00000488017 PGPEP1Q9NXJ5 209 aa9.51□□□□□ -0.89
SMC4-220ENST00000488017 BEND7Q8N7W2 519 aaPredicted RBP9.5□□□□□ -0.89
SMC4-220ENST00000488017 CNTNAP5Q8WYK1 1306 aa9.5□□□□□ -0.89
SMC4-220ENST00000488017 PDE4DQ08499 809 aa9.49□□□□□ -0.89
SMC4-220ENST00000488017 ERFEQ4G0M1 354 aa9.49□□□□□ -0.89
SMC4-220ENST00000488017 RTL5Q5HYW3 569 aaPredicted RBP9.49□□□□□ -0.89
SMC4-220ENST00000488017 PPP1R26Q5T8A7 1209 aaPredicted RBP9.48□□□□□ -0.89
SMC4-220ENST00000488017 CDV3Q9UKY7 258 aaKnown RBP9.48□□□□□ -0.89
SMC4-220ENST00000488017 CLK2P49760 499 aaKnown RBP9.47□□□□□ -0.89
SMC4-220ENST00000488017 GAS6Q14393 721 aa9.47□□□□□ -0.89
SMC4-220ENST00000488017 PDXDC2PQ6P474 469 aa9.47□□□□□ -0.89
SMC4-220ENST00000488017 CARD14Q9BXL6 1004 aa9.47□□□□□ -0.89
SMC4-220ENST00000488017 RSPH6AQ9H0K4 717 aa9.47□□□□□ -0.89
SMC4-220ENST00000488017 CBLBQ13191 982 aa9.46□□□□□ -0.9
SMC4-220ENST00000488017 SENP3-EIF4A1A0A087X0R7 540 aa9.45□□□□□ -0.9
SMC4-220ENST00000488017 DHX9Q08211 1270 aaKnown RBP9.45□□□□□ -0.9
SMC4-220ENST00000488017 PODNQ7Z5L7 613 aa9.45□□□□□ -0.9
SMC4-220ENST00000488017 CTSOP43234 321 aaPredicted RBP9.44□□□□□ -0.9
SMC4-220ENST00000488017 KRTAP1-3Q8IUG1 177 aa9.44□□□□□ -0.9
SMC4-220ENST00000488017 ARHGAP9Q9BRR9 750 aa9.44□□□□□ -0.9
SMC4-220ENST00000488017 ZC3H4Q9UPT8 1303 aaKnown RBP9.43□□□□□ -0.9
SMC4-220ENST00000488017 SLC10A4Q96EP9 437 aa9.43□□□□□ -0.9
SMC4-220ENST00000488017 KCTD15Q96SI1 283 aaPredicted RBP9.43□□□□□ -0.9
SMC4-220ENST00000488017 BAG6P46379 1132 aa9.42□□□□□ -0.9
SMC4-220ENST00000488017 FKBPLQ9UIM3 349 aa9.42□□□□□ -0.9
SMC4-220ENST00000488017 CTDSPL2Q05D32 466 aa9.41□□□□□ -0.9
SMC4-220ENST00000488017 BCRP11274 1271 aa9.4□□□□□ -0.9
SMC4-220ENST00000488017 RNF217Q8TC41 542 aa9.4□□□□□ -0.9
SMC4-220ENST00000488017 ZBTB33Q86T24 672 aa9.39□□□□□ -0.91
SMC4-220ENST00000488017 NEDD1Q8NHV4 660 aa9.39□□□□□ -0.91
SMC4-220ENST00000488017 INSM2Q96T92 566 aaPredicted RBP9.39□□□□□ -0.91
SMC4-220ENST00000488017 MBIPQ9NS73 344 aa9.39□□□□□ -0.91
SMC4-220ENST00000488017 POLR3EQ9NVU0 708 aa9.39□□□□□ -0.91
SMC4-220ENST00000488017 INTS6LQ5JSJ4 861 aaKnown RBP9.38□□□□□ -0.91
SMC4-220ENST00000488017 GPSM3Q9Y4H4 160 aa9.38□□□□□ -0.91
SMC4-220ENST00000488017 PTK2Q05397 1052 aa9.37□□□□□ -0.91
SMC4-220ENST00000488017 AGBL1Q96MI9 1066 aa9.37□□□□□ -0.91
SMC4-220ENST00000488017 POLMQ9NP87 494 aaPredicted RBP9.37□□□□□ -0.91
SMC4-220ENST00000488017 CUEDC1Q9NWM3 386 aaPredicted RBP9.37□□□□□ -0.91
SMC4-220ENST00000488017 LRRN4Q8WUT4 740 aa9.36□□□□□ -0.91
SMC4-220ENST00000488017 LRRC4BQ9NT99 713 aa9.36□□□□□ -0.91
SMC4-220ENST00000488017 IGF1RP08069 1367 aa9.36□□□□□ -0.91
SMC4-220ENST00000488017 FURINP09958 794 aa9.35□□□□□ -0.91
SMC4-220ENST00000488017 RELBQ01201 579 aa9.35□□□□□ -0.91
SMC4-220ENST00000488017 SLC24A3Q9HC58 644 aa9.35□□□□□ -0.91
SMC4-220ENST00000488017 NBPF20Q3BBV1 942 aa9.34□□□□□ -0.91
SMC4-220ENST00000488017 GMCL1Q96IK5 515 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms