RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 ADAMTS2O95450 1211 aa9.11□□□□□ -0.95
PTPRE-209ENST00000487428 NUTM2GQ5VZR2 741 aa9.11□□□□□ -0.95
PTPRE-209ENST00000487428 IP6K1Q92551 441 aa9.11□□□□□ -0.95
PTPRE-209ENST00000487428 C8orf37Q96NL8 207 aa9.11□□□□□ -0.95
PTPRE-209ENST00000487428 USP21Q9UK80 565 aa9.11□□□□□ -0.95
PTPRE-209ENST00000487428 THRAP3Q9Y2W1 955 aaKnown RBP9.11□□□□□ -0.95
PTPRE-209ENST00000487428 FLT4P35916 1363 aa9.11□□□□□ -0.95
PTPRE-209ENST00000487428 ERBB3P21860 1342 aa9.1□□□□□ -0.95
PTPRE-209ENST00000487428 MAP3K19Q56UN5 1328 aa9.1□□□□□ -0.95
PTPRE-209ENST00000487428 WDR17Q8IZU2 1322 aa9.1□□□□□ -0.95
PTPRE-209ENST00000487428 RGPD2P0DJD1 1756 aa9.1□□□□□ -0.95
PTPRE-209ENST00000487428 RBM6P78332 1123 aaKnown RBP9.1□□□□□ -0.95
PTPRE-209ENST00000487428 PHF23Q9BUL5 403 aaPredicted RBP9.1□□□□□ -0.95
PTPRE-209ENST00000487428 GGNBP2Q9H3C7 697 aa9.1□□□□□ -0.95
PTPRE-209ENST00000487428 ZRANB1Q9UGI0 708 aa9.1□□□□□ -0.95
PTPRE-209ENST00000487428 CRB1P82279 1406 aa9.1□□□□□ -0.95
PTPRE-209ENST00000487428 RGPD1P0DJD0 1748 aa9.1□□□□□ -0.95
PTPRE-209ENST00000487428 BRWD3Q6RI45 1802 aa9.1□□□□□ -0.95
PTPRE-209ENST00000487428 SPATA31A5Q5VU36 1347 aa9.09□□□□□ -0.95
PTPRE-209ENST00000487428 SPATA31A7Q8IWB4 1347 aa9.09□□□□□ -0.95
PTPRE-209ENST00000487428 ZNF316A6NFI3 1004 aaPredicted RBP9.09□□□□□ -0.95
PTPRE-209ENST00000487428 ZC3H6P61129 1189 aaKnown RBP9.09□□□□□ -0.95
PTPRE-209ENST00000487428 BARGINQ6ZT62 677 aa9.09□□□□□ -0.95
PTPRE-209ENST00000487428 GJD4Q96KN9 370 aaPredicted RBP9.09□□□□□ -0.95
PTPRE-209ENST00000487428 BTG4Q9NY30 223 aa9.09□□□□□ -0.95
PTPRE-209ENST00000487428 PARD3Q8TEW0 1356 aa9.09□□□□□ -0.95
PTPRE-209ENST00000487428 SPATA31A1Q5TZJ5 1347 aa9.08□□□□□ -0.96
PTPRE-209ENST00000487428 POTEAQ6S8J7 498 aa9.08□□□□□ -0.96
PTPRE-209ENST00000487428 POLR3GLQ9BT43 218 aa9.08□□□□□ -0.96
PTPRE-209ENST00000487428 QTRT2Q9H974 415 aaKnown RBP9.08□□□□□ -0.96
PTPRE-209ENST00000487428 POLKQ9UBT6 870 aa9.08□□□□□ -0.96
PTPRE-209ENST00000487428 AXIN2Q9Y2T1 843 aa9.08□□□□□ -0.96
PTPRE-209ENST00000487428 RXRBP28702 533 aa9.07□□□□□ -0.96
PTPRE-209ENST00000487428 HOXC9P31274 260 aa9.07□□□□□ -0.96
PTPRE-209ENST00000487428 CDCA7Q9BWT1 371 aaPredicted RBP9.07□□□□□ -0.96
PTPRE-209ENST00000487428 CARD10Q9BWT7 1032 aa9.07□□□□□ -0.96
PTPRE-209ENST00000487428 DISP2A7MBM2 1401 aa9.06□□□□□ -0.96
PTPRE-209ENST00000487428 BCL9O00512 1426 aa9.06□□□□□ -0.96
PTPRE-209ENST00000487428 PKD1L3Q7Z443 1732 aa9.06□□□□□ -0.96
PTPRE-209ENST00000487428 CHRNA2Q15822 529 aa9.06□□□□□ -0.96
PTPRE-209ENST00000487428 MORC1Q86VD1 984 aa9.06□□□□□ -0.96
PTPRE-209ENST00000487428 SBF2Q86WG5 1849 aa9.05□□□□□ -0.96
PTPRE-209ENST00000487428 COL3A1P02461 1466 aaPredicted RBP9.05□□□□□ -0.96
PTPRE-209ENST00000487428 RALBP1Q15311 655 aa9.05□□□□□ -0.96
PTPRE-209ENST00000487428 TCP11L2Q8N4U5 519 aa9.05□□□□□ -0.96
PTPRE-209ENST00000487428 SHANK3Q9BYB0 1731 aa9.05□□□□□ -0.96
PTPRE-209ENST00000487428 LRRC37A3O60309 1634 aa9.05□□□□□ -0.96
PTPRE-209ENST00000487428 RGS12O14924 1447 aa9.05□□□□□ -0.96
PTPRE-209ENST00000487428 KAT6BQ8WYB5 2073 aa9.04□□□□□ -0.96
PTPRE-209ENST00000487428 AMPHP49418 695 aa9.04□□□□□ -0.96
PTPRE-209ENST00000487428 EVA1CP58658 441 aa9.04□□□□□ -0.96
PTPRE-209ENST00000487428 KDRP35968 1356 aa9.03□□□□□ -0.96
PTPRE-209ENST00000487428 RRS1Q15050 365 aaKnown RBP9.03□□□□□ -0.96
PTPRE-209ENST00000487428 LARP1Q6PKG0 1096 aaKnown RBP9.03□□□□□ -0.96
PTPRE-209ENST00000487428 ANKRD24Q8TF21 1146 aa9.03□□□□□ -0.96
PTPRE-209ENST00000487428 EMILIN1Q9Y6C2 1016 aa9.03□□□□□ -0.96
PTPRE-209ENST00000487428 DDX10Q13206 875 aaKnown RBP9.02□□□□□ -0.97
PTPRE-209ENST00000487428 HSP90AB2PQ58FF8 381 aa9.02□□□□□ -0.97
PTPRE-209ENST00000487428 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.02□□□□□ -0.97
PTPRE-209ENST00000487428 VIRMAQ69YN4 1812 aaKnown RBP9.02□□□□□ -0.97
PTPRE-209ENST00000487428 IGSF1Q8N6C5 1336 aa9.02□□□□□ -0.97
PTPRE-209ENST00000487428 RGPD3A6NKT7 1758 aaPredicted RBP9.01□□□□□ -0.97
PTPRE-209ENST00000487428 RGPD4Q7Z3J3 1758 aa9.01□□□□□ -0.97
PTPRE-209ENST00000487428 OVOS2A0A0G2JMS6 1433 aa9.01□□□□□ -0.97
PTPRE-209ENST00000487428 MTHFSP49914 203 aa9.01□□□□□ -0.97
PTPRE-209ENST00000487428 TNS2Q63HR2 1409 aa9.01□□□□□ -0.97
PTPRE-209ENST00000487428 TOM1L2Q6ZVM7 507 aa9.01□□□□□ -0.97
PTPRE-209ENST00000487428 EP400Q96L91 3159 aa9.01□□□□□ -0.97
PTPRE-209ENST00000487428 SOX12O15370 315 aa9□□□□□ -0.97
PTPRE-209ENST00000487428 FBLN1P23142 703 aa9□□□□□ -0.97
PTPRE-209ENST00000487428 PPP2R1AP30153 589 aa9□□□□□ -0.97
PTPRE-209ENST00000487428 CC2D1BQ5T0F9 858 aaKnown RBP9□□□□□ -0.97
PTPRE-209ENST00000487428 PRKRIP1Q9H875 184 aaPredicted RBP9□□□□□ -0.97
PTPRE-209ENST00000487428 STRN4Q9NRL3 753 aa9□□□□□ -0.97
PTPRE-209ENST00000487428 IL2RBP14784 551 aa8.99□□□□□ -0.97
PTPRE-209ENST00000487428 IL13P35225 146 aa8.99□□□□□ -0.97
PTPRE-209ENST00000487428 EIF4A2Q14240 407 aaKnown RBP8.99□□□□□ -0.97
PTPRE-209ENST00000487428 ADAMTS7Q9UKP4 1686 aa8.99□□□□□ -0.97
PTPRE-209ENST00000487428 MYBBP1AQ9BQG0 1328 aaKnown RBP8.99□□□□□ -0.97
PTPRE-209ENST00000487428 CSB-PGBD3P0DP91 1061 aa8.98□□□□□ -0.97
PTPRE-209ENST00000487428 NBPF6Q5VWK0 638 aa8.98□□□□□ -0.97
PTPRE-209ENST00000487428 SEPT12Q8IYM1 358 aa8.98□□□□□ -0.97
PTPRE-209ENST00000487428 NBPF4Q96M43 638 aa8.98□□□□□ -0.97
PTPRE-209ENST00000487428 EYA1Q99502 592 aa8.98□□□□□ -0.97
PTPRE-209ENST00000487428 NHSQ6T4R5 1651 aa8.97□□□□□ -0.97
PTPRE-209ENST00000487428 TNS1Q9HBL0 1735 aaKnown RBP8.97□□□□□ -0.97
PTPRE-209ENST00000487428 SCN11AQ9UI33 1791 aa8.97□□□□□ -0.97
PTPRE-209ENST00000487428 MEGF6O75095 1541 aa8.97□□□□□ -0.97
PTPRE-209ENST00000487428 ITGB4P16144 1822 aa8.97□□□□□ -0.97
PTPRE-209ENST00000487428 DIAPH1O60610 1272 aaKnown RBP8.97□□□□□ -0.97
PTPRE-209ENST00000487428 PLEKHG5O94827 1062 aa8.97□□□□□ -0.97
PTPRE-209ENST00000487428 FAM98CQ17RN3 349 aaKnown RBP8.97□□□□□ -0.97
PTPRE-209ENST00000487428 CCDC125Q86Z20 511 aa8.97□□□□□ -0.97
PTPRE-209ENST00000487428 CFAP53Q96M91 514 aa8.97□□□□□ -0.97
PTPRE-209ENST00000487428 NLRP2Q9NX02 1062 aa8.97□□□□□ -0.97
PTPRE-209ENST00000487428 CCDC9Q9Y3X0 531 aaKnown RBP8.97□□□□□ -0.97
PTPRE-209ENST00000487428 DDB1Q16531 1140 aa8.96□□□□□ -0.98
PTPRE-209ENST00000487428 ILDR2Q71H61 639 aa8.96□□□□□ -0.98
PTPRE-209ENST00000487428 KRT27Q7Z3Y8 459 aa8.96□□□□□ -0.98
PTPRE-209ENST00000487428 DLG5Q8TDM6 1919 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms