RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 TRIM46Q7Z4K8 759 aa8.88□□□□□ -0.99
VPS41-213ENST00000485955 TBC1D2BQ9UPU7 963 aa8.88□□□□□ -0.99
VPS41-213ENST00000485955 NDUFB9Q9Y6M9 179 aa8.88□□□□□ -0.99
VPS41-213ENST00000485955 TMEM132AQ24JP5 1023 aa8.86□□□□□ -0.99
VPS41-213ENST00000485955 C11orf95C9JLR9 678 aaPredicted RBP8.85□□□□□ -0.99
VPS41-213ENST00000485955 SNRPBP14678 240 aaKnown RBP8.85□□□□□ -0.99
VPS41-213ENST00000485955 DZIP3Q86Y13 1208 aaKnown RBP8.85□□□□□ -0.99
VPS41-213ENST00000485955 CCDC116Q8IYX3 515 aa8.85□□□□□ -0.99
VPS41-213ENST00000485955 MCM6Q14566 821 aa8.84□□□□□ -0.99
VPS41-213ENST00000485955 INTS6LQ5JSJ4 861 aaKnown RBP8.84□□□□□ -0.99
VPS41-213ENST00000485955 PPP1R26Q5T8A7 1209 aaPredicted RBP8.84□□□□□ -0.99
VPS41-213ENST00000485955 CDV3Q9UKY7 258 aaKnown RBP8.84□□□□□ -0.99
VPS41-213ENST00000485955 APBB1O00213 710 aa8.83□□□□□ -1
VPS41-213ENST00000485955 NR1H3Q13133 447 aa8.83□□□□□ -1
VPS41-213ENST00000485955 IRF5Q13568 498 aa8.83□□□□□ -1
VPS41-213ENST00000485955 GDPD2Q9HCC8 539 aa8.83□□□□□ -1
VPS41-213ENST00000485955 PCDHB9Q9Y5E1 797 aa8.83□□□□□ -1
VPS41-213ENST00000485955 RAB15P59190 212 aa8.82□□□□□ -1
VPS41-213ENST00000485955 MRPL14Q6P1L8 145 aaKnown RBP8.82□□□□□ -1
VPS41-213ENST00000485955 TRIM47Q96LD4 638 aa8.82□□□□□ -1
VPS41-213ENST00000485955 ZFP42Q96MM3 310 aa8.82□□□□□ -1
VPS41-213ENST00000485955 EMILIN1Q9Y6C2 1016 aa8.82□□□□□ -1
VPS41-213ENST00000485955 ESPNB1AK53 854 aa8.81□□□□□ -1
VPS41-213ENST00000485955 GIGYF1O75420 1035 aaPredicted RBP8.81□□□□□ -1
VPS41-213ENST00000485955 NBPF20Q3BBV1 942 aa8.81□□□□□ -1
VPS41-213ENST00000485955 ZNF775Q96BV0 537 aaPredicted RBP8.81□□□□□ -1
VPS41-213ENST00000485955 TMPRSS4Q9NRS4 437 aa8.81□□□□□ -1
VPS41-213ENST00000485955 ERVH48-1M5A8F1 160 aa8.8□□□□□ -1
VPS41-213ENST00000485955 CBLBQ13191 982 aa8.8□□□□□ -1
VPS41-213ENST00000485955 PURBQ96QR8 312 aaKnown RBP8.8□□□□□ -1
VPS41-213ENST00000485955 SENP2Q9HC62 589 aa8.8□□□□□ -1
VPS41-213ENST00000485955 ABL2P42684 1182 aa8.78□□□□□ -1
VPS41-213ENST00000485955 MEIOBQ8N635 442 aa8.78□□□□□ -1
VPS41-213ENST00000485955 DHX9Q08211 1270 aaKnown RBP8.77□□□□□ -1.01
VPS41-213ENST00000485955 C6orf118Q5T5N4 469 aa8.77□□□□□ -1.01
VPS41-213ENST00000485955 Q6ZVU0 165 aa8.77□□□□□ -1.01
VPS41-213ENST00000485955 POM121Q96HA1 1249 aa8.77□□□□□ -1.01
VPS41-213ENST00000485955 PRM3Q9NNZ6 103 aa8.77□□□□□ -1.01
VPS41-213ENST00000485955 PGPEP1Q9NXJ5 209 aa8.77□□□□□ -1.01
VPS41-213ENST00000485955 COG6Q9Y2V7 657 aa8.77□□□□□ -1.01
VPS41-213ENST00000485955 LILRA1O75019 489 aa8.76□□□□□ -1.01
VPS41-213ENST00000485955 ADD1P35611 737 aaKnown RBP8.76□□□□□ -1.01
VPS41-213ENST00000485955 ZNF784Q8NCA9 323 aaPredicted RBP8.76□□□□□ -1.01
VPS41-213ENST00000485955 KIFC2Q96AC6 838 aa8.76□□□□□ -1.01
VPS41-213ENST00000485955 VAC14Q08AM6 782 aa8.75□□□□□ -1.01
VPS41-213ENST00000485955 SCARF1Q14162 830 aa8.75□□□□□ -1.01
VPS41-213ENST00000485955 LINC00528Q8N1L1 170 aa8.75□□□□□ -1.01
VPS41-213ENST00000485955 SOBPA7XYQ1 873 aa8.74□□□□□ -1.01
VPS41-213ENST00000485955 BMP2P12643 396 aa8.74□□□□□ -1.01
VPS41-213ENST00000485955 SEPT12Q8IYM1 358 aa8.74□□□□□ -1.01
VPS41-213ENST00000485955 AGBL1Q96MI9 1066 aa8.74□□□□□ -1.01
VPS41-213ENST00000485955 CEP126Q9P2H0 1117 aa8.74□□□□□ -1.01
VPS41-213ENST00000485955 MCCD1P59942 119 aaPredicted RBP8.73□□□□□ -1.01
VPS41-213ENST00000485955 TSEN34Q9BSV6 310 aaKnown RBP8.73□□□□□ -1.01
VPS41-213ENST00000485955 ZNF330Q9Y3S2 320 aaPredicted RBP8.73□□□□□ -1.01
VPS41-213ENST00000485955 KDF1Q8NAX2 398 aaPredicted RBP8.72□□□□□ -1.01
VPS41-213ENST00000485955 CYLDQ9NQC7 956 aa8.72□□□□□ -1.01
VPS41-213ENST00000485955 UPP2O95045 317 aa8.71□□□□□ -1.02
VPS41-213ENST00000485955 RELBQ01201 579 aa8.71□□□□□ -1.02
VPS41-213ENST00000485955 FLIIQ13045 1269 aa8.71□□□□□ -1.02
VPS41-213ENST00000485955 TSGA10IPQ3SY00 556 aa8.71□□□□□ -1.02
VPS41-213ENST00000485955 SCTRP47872 440 aa8.7□□□□□ -1.02
VPS41-213ENST00000485955 EIF4G2P78344 907 aaKnown RBP eCLIP8.7□□□□□ -1.02
VPS41-213ENST00000485955 ZNF395Q9H8N7 513 aaPredicted RBP8.7□□□□□ -1.02
VPS41-213ENST00000485955 SOS2Q07890 1332 aaPredicted RBP8.7□□□□□ -1.02
VPS41-213ENST00000485955 SPINT1O43278 529 aa8.69□□□□□ -1.02
VPS41-213ENST00000485955 RNF20Q5VTR2 975 aa8.69□□□□□ -1.02
VPS41-213ENST00000485955 PHTF2Q8N3S3 785 aa8.69□□□□□ -1.02
VPS41-213ENST00000485955 CCDC85AQ96PX6 553 aaPredicted RBP8.69□□□□□ -1.02
VPS41-213ENST00000485955 UBTFP17480 764 aaKnown RBP8.68□□□□□ -1.02
VPS41-213ENST00000485955 WASHC4Q2M389 1173 aa8.68□□□□□ -1.02
VPS41-213ENST00000485955 LCE2AQ5TA79 106 aaPredicted RBP8.68□□□□□ -1.02
VPS41-213ENST00000485955 ZNF592Q92610 1267 aa8.68□□□□□ -1.02
VPS41-213ENST00000485955 CDCA7Q9BWT1 371 aaPredicted RBP8.68□□□□□ -1.02
VPS41-213ENST00000485955 DNMT3LQ9UJW3 386 aa8.68□□□□□ -1.02
VPS41-213ENST00000485955 PCDHB11Q9Y5F2 797 aa8.68□□□□□ -1.02
VPS41-213ENST00000485955 ADH1AP07327 375 aa8.67□□□□□ -1.02
VPS41-213ENST00000485955 CTSOP43234 321 aaPredicted RBP8.67□□□□□ -1.02
VPS41-213ENST00000485955 ERVK-9P63128 1117 aa8.67□□□□□ -1.02
VPS41-213ENST00000485955 NFX1Q12986 1120 aaKnown RBP8.67□□□□□ -1.02
VPS41-213ENST00000485955 INSM2Q96T92 566 aaPredicted RBP8.67□□□□□ -1.02
VPS41-213ENST00000485955 FIGNL2A6NMB9 653 aa8.66□□□□□ -1.02
VPS41-213ENST00000485955 MAN1A2O60476 641 aa8.66□□□□□ -1.02
VPS41-213ENST00000485955 TREML4Q6UXN2 200 aa8.66□□□□□ -1.02
VPS41-213ENST00000485955 CCDC125Q86Z20 511 aa8.66□□□□□ -1.02
VPS41-213ENST00000485955 TTLL8A6PVC2 850 aa8.65□□□□□ -1.02
VPS41-213ENST00000485955 TERTO14746 1132 aaKnown RBP8.65□□□□□ -1.02
VPS41-213ENST00000485955 RAD21O60216 631 aa8.65□□□□□ -1.02
VPS41-213ENST00000485955 PTGIRP43119 386 aa8.65□□□□□ -1.02
VPS41-213ENST00000485955 LCE2CQ5TA81 110 aa8.65□□□□□ -1.02
VPS41-213ENST00000485955 CC2D2BQ6DHV5 1058 aa8.65□□□□□ -1.02
VPS41-213ENST00000485955 CLUAP1Q96AJ1 413 aa8.65□□□□□ -1.02
VPS41-213ENST00000485955 VEGFBP49765 207 aa8.64□□□□□ -1.03
VPS41-213ENST00000485955 OSBPL3Q9H4L5 887 aa8.64□□□□□ -1.03
VPS41-213ENST00000485955 NXF1Q9UBU9 619 aaKnown RBP8.64□□□□□ -1.03
VPS41-213ENST00000485955 POM121CA8CG34 1229 aa8.63□□□□□ -1.03
VPS41-213ENST00000485955 SEMA3FQ13275 785 aa8.63□□□□□ -1.03
VPS41-213ENST00000485955 SLFNL1Q499Z3 407 aa8.63□□□□□ -1.03
VPS41-213ENST00000485955 ALG2Q9H553 416 aa8.63□□□□□ -1.03
VPS41-213ENST00000485955 CHIC2Q9UKJ5 165 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms