RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 PHLPP1O60346 1717 aa11.05□□□□□ -0.64
USP4-210ENST00000483212 RGPD1P0DJD0 1748 aa11.05□□□□□ -0.64
USP4-210ENST00000483212 IL13P35225 146 aa11.05□□□□□ -0.64
USP4-210ENST00000483212 ARHGEF25Q86VW2 580 aa11.05□□□□□ -0.64
USP4-210ENST00000483212 ADAMTS8Q9UP79 889 aa11.05□□□□□ -0.64
USP4-210ENST00000483212 COL18A1P39060 1754 aa11.04□□□□□ -0.64
USP4-210ENST00000483212 NCBP3Q53F19 620 aaKnown RBP11.04□□□□□ -0.64
USP4-210ENST00000483212 HSP90AB2PQ58FF8 381 aa11.04□□□□□ -0.64
USP4-210ENST00000483212 LMOD2Q6P5Q4 547 aa11.04□□□□□ -0.64
USP4-210ENST00000483212 ABCC6O95255 1503 aa11.04□□□□□ -0.64
USP4-210ENST00000483212 CPDO75976 1380 aa11.03□□□□□ -0.64
USP4-210ENST00000483212 PPM1GO15355 546 aaPredicted RBP11.03□□□□□ -0.64
USP4-210ENST00000483212 DIAPH1O60610 1272 aaKnown RBP11.03□□□□□ -0.64
USP4-210ENST00000483212 HOXC9P31274 260 aa11.03□□□□□ -0.64
USP4-210ENST00000483212 CABLES1Q8TDN4 633 aa11.03□□□□□ -0.64
USP4-210ENST00000483212 YTHDC1Q96MU7 727 aaKnown RBP11.03□□□□□ -0.64
USP4-210ENST00000483212 PIP4K2BP78356 416 aa11.02□□□□□ -0.65
USP4-210ENST00000483212 EIF4A2Q14240 407 aaKnown RBP11.02□□□□□ -0.65
USP4-210ENST00000483212 WDR43Q15061 677 aaKnown RBP eCLIP11.02□□□□□ -0.65
USP4-210ENST00000483212 CHRDL2Q6WN34 429 aa11.02□□□□□ -0.65
USP4-210ENST00000483212 IP6K1Q92551 441 aa11.02□□□□□ -0.65
USP4-210ENST00000483212 LRRC59Q96AG4 307 aaKnown RBP11.02□□□□□ -0.65
USP4-210ENST00000483212 LMO7Q8WWI1 1683 aa11.01□□□□□ -0.65
USP4-210ENST00000483212 NPM3O75607 178 aaKnown RBP11□□□□□ -0.65
USP4-210ENST00000483212 AMPHP49418 695 aa11□□□□□ -0.65
USP4-210ENST00000483212 NUDCQ9Y266 331 aa11□□□□□ -0.65
USP4-210ENST00000483212 CAMTA1Q9Y6Y1 1673 aa11□□□□□ -0.65
USP4-210ENST00000483212 KIAA0232Q92628 1395 aa11□□□□□ -0.65
USP4-210ENST00000483212 NCAPD2Q15021 1401 aa11□□□□□ -0.65
USP4-210ENST00000483212 U2AF1L5P0DN76 240 aaPredicted RBP10.99□□□□□ -0.65
USP4-210ENST00000483212 ZC3H6P61129 1189 aaKnown RBP10.99□□□□□ -0.65
USP4-210ENST00000483212 U2AF1Q01081 240 aaKnown RBP eCLIP10.99□□□□□ -0.65
USP4-210ENST00000483212 PLEKHF1Q96S99 279 aa10.99□□□□□ -0.65
USP4-210ENST00000483212 AXIN2Q9Y2T1 843 aa10.99□□□□□ -0.65
USP4-210ENST00000483212 IGSF1Q8N6C5 1336 aa10.99□□□□□ -0.65
USP4-210ENST00000483212 U2SURPO15042 1029 aaKnown RBP10.98□□□□□ -0.65
USP4-210ENST00000483212 PLEKHG5O94827 1062 aa10.98□□□□□ -0.65
USP4-210ENST00000483212 HNRNPUQ00839 825 aaKnown RBP eCLIP10.98□□□□□ -0.65
USP4-210ENST00000483212 RSPH6AQ9H0K4 717 aa10.98□□□□□ -0.65
USP4-210ENST00000483212 KDRP35968 1356 aa10.98□□□□□ -0.65
USP4-210ENST00000483212 CCDC146Q8IYE0 955 aa10.97□□□□□ -0.65
USP4-210ENST00000483212 EYA1Q99502 592 aa10.97□□□□□ -0.65
USP4-210ENST00000483212 ZBED9Q6R2W3 1325 aa10.97□□□□□ -0.65
USP4-210ENST00000483212 RGPD5Q99666 1765 aa10.96□□□□□ -0.65
USP4-210ENST00000483212 ERBB3P21860 1342 aa10.96□□□□□ -0.65
USP4-210ENST00000483212 FCHSD2O94868 740 aa10.96□□□□□ -0.65
USP4-210ENST00000483212 RUNDC1Q96C34 613 aa10.96□□□□□ -0.65
USP4-210ENST00000483212 CHRNA2Q15822 529 aa10.95□□□□□ -0.66
USP4-210ENST00000483212 AEBP1Q8IUX7 1158 aa10.95□□□□□ -0.66
USP4-210ENST00000483212 ANKRD24Q8TF21 1146 aa10.95□□□□□ -0.66
USP4-210ENST00000483212 FAM208AQ9UK61 1670 aaKnown RBP10.95□□□□□ -0.66
USP4-210ENST00000483212 COL5A2P05997 1499 aaPredicted RBP10.94□□□□□ -0.66
USP4-210ENST00000483212 JCADQ9P266 1359 aa10.94□□□□□ -0.66
USP4-210ENST00000483212 ZNF521Q96K83 1311 aa10.94□□□□□ -0.66
USP4-210ENST00000483212 SENP3-EIF4A1A0A087X0R7 540 aa10.94□□□□□ -0.66
USP4-210ENST00000483212 ZBTB7CA1YPR0 619 aa10.94□□□□□ -0.66
USP4-210ENST00000483212 FAM83GA6ND36 823 aa10.94□□□□□ -0.66
USP4-210ENST00000483212 APAF1O14727 1248 aa10.94□□□□□ -0.66
USP4-210ENST00000483212 HMOX1P09601 288 aa10.94□□□□□ -0.66
USP4-210ENST00000483212 PRKAR2BP31323 418 aa10.94□□□□□ -0.66
USP4-210ENST00000483212 NBPF6Q5VWK0 638 aa10.94□□□□□ -0.66
USP4-210ENST00000483212 SULT6B1Q6IMI4 303 aa10.94□□□□□ -0.66
USP4-210ENST00000483212 NBPF4Q96M43 638 aa10.94□□□□□ -0.66
USP4-210ENST00000483212 RGPD2P0DJD1 1756 aa10.94□□□□□ -0.66
USP4-210ENST00000483212 COL14A1Q05707 1796 aaKnown RBP10.94□□□□□ -0.66
USP4-210ENST00000483212 HSPA1LP34931 641 aa10.93□□□□□ -0.66
USP4-210ENST00000483212 LTV1Q96GA3 475 aaPredicted RBP10.93□□□□□ -0.66
USP4-210ENST00000483212 PRDM11Q9NQV5 511 aa10.93□□□□□ -0.66
USP4-210ENST00000483212 LRP6O75581 1613 aa10.92□□□□□ -0.66
USP4-210ENST00000483212 TCP11L2Q8N4U5 519 aa10.92□□□□□ -0.66
USP4-210ENST00000483212 PHACTR3Q96KR7 559 aa10.92□□□□□ -0.66
USP4-210ENST00000483212 PLCH1Q4KWH8 1693 aa10.92□□□□□ -0.66
USP4-210ENST00000483212 HAP1P54257 671 aaPredicted RBP10.91□□□□□ -0.66
USP4-210ENST00000483212 NGEFQ8N5V2 710 aa10.91□□□□□ -0.66
USP4-210ENST00000483212 PNNQ9H307 717 aaKnown RBP10.91□□□□□ -0.66
USP4-210ENST00000483212 NRAPQ86VF7 1730 aa10.91□□□□□ -0.66
USP4-210ENST00000483212 WDR17Q8IZU2 1322 aa10.9□□□□□ -0.66
USP4-210ENST00000483212 TMPOP42166 694 aaKnown RBP10.9□□□□□ -0.66
USP4-210ENST00000483212 CCDC27Q2M243 656 aa10.9□□□□□ -0.66
USP4-210ENST00000483212 USHBP1Q8N6Y0 703 aa10.9□□□□□ -0.66
USP4-210ENST00000483212 SLIT2O94813 1529 aa10.89□□□□□ -0.67
USP4-210ENST00000483212 SPATA31A6Q5VVP1 1343 aa10.89□□□□□ -0.67
USP4-210ENST00000483212 MAPK8IP3Q9UPT6 1336 aa10.89□□□□□ -0.67
USP4-210ENST00000483212 NFE2L2Q16236 605 aa10.89□□□□□ -0.67
USP4-210ENST00000483212 TRIM35Q9UPQ4 493 aa10.89□□□□□ -0.67
USP4-210ENST00000483212 RRP7AQ9Y3A4 280 aaKnown RBP10.89□□□□□ -0.67
USP4-210ENST00000483212 PLEKHG2Q9H7P9 1386 aa10.89□□□□□ -0.67
USP4-210ENST00000483212 WWC1Q8IX03 1113 aa10.88□□□□□ -0.67
USP4-210ENST00000483212 NWD2Q9ULI1 1742 aa10.88□□□□□ -0.67
USP4-210ENST00000483212 SALL2Q9Y467 1007 aaPredicted RBP10.88□□□□□ -0.67
USP4-210ENST00000483212 MEGF6O75095 1541 aa10.88□□□□□ -0.67
USP4-210ENST00000483212 MTHFSDQ2M296 383 aaKnown RBP10.87□□□□□ -0.67
USP4-210ENST00000483212 BTG4Q9NY30 223 aa10.87□□□□□ -0.67
USP4-210ENST00000483212 DLG5Q8TDM6 1919 aa10.86□□□□□ -0.67
USP4-210ENST00000483212 CRB1P82279 1406 aa10.86□□□□□ -0.67
USP4-210ENST00000483212 NUTM2BA6NNL0 878 aaPredicted RBP10.86□□□□□ -0.67
USP4-210ENST00000483212 NUTM2EB1AL46 878 aaPredicted RBP10.86□□□□□ -0.67
USP4-210ENST00000483212 ADAMTS2O95450 1211 aa10.86□□□□□ -0.67
USP4-210ENST00000483212 CENPBP07199 599 aaPredicted RBP10.86□□□□□ -0.67
USP4-210ENST00000483212 PDE3BQ13370 1112 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms