RNA–Protein interactions for RNA: ENST00000482965.1

SNX4-205, Transcript of sorting nexin 4, humanhuman

TSL 3

Gene SNX4, Length 578 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX4-205ENST00000482965 COL18A1P39060 1754 aa12.1□□□□□ -0.47
SNX4-205ENST00000482965 RGPD5Q99666 1765 aa12.1□□□□□ -0.47
SNX4-205ENST00000482965 CAMTA1Q9Y6Y1 1673 aa12.1□□□□□ -0.47
SNX4-205ENST00000482965 GLI3P10071 1580 aa12.1□□□□□ -0.47
SNX4-205ENST00000482965 EVA1CP58658 441 aa12.1□□□□□ -0.47
SNX4-205ENST00000482965 ARHGEF25Q86VW2 580 aa12.1□□□□□ -0.47
SNX4-205ENST00000482965 RGS12O14924 1447 aa12.1□□□□□ -0.47
SNX4-205ENST00000482965 AATKQ6ZMQ8 1374 aa12.09□□□□□ -0.47
SNX4-205ENST00000482965 FYB1O15117 783 aa12.09□□□□□ -0.47
SNX4-205ENST00000482965 GGNBP2Q9H3C7 697 aa12.09□□□□□ -0.47
SNX4-205ENST00000482965 PANK3Q9H999 370 aa12.09□□□□□ -0.47
SNX4-205ENST00000482965 CGNL1Q0VF96 1302 aa12.08□□□□□ -0.48
SNX4-205ENST00000482965 COL5A2P05997 1499 aaPredicted RBP12.08□□□□□ -0.48
SNX4-205ENST00000482965 CCDC7Q96M83 1385 aa12.07□□□□□ -0.48
SNX4-205ENST00000482965 ABCC6O95255 1503 aa12.07□□□□□ -0.48
SNX4-205ENST00000482965 SOCS7O14512 581 aa12.07□□□□□ -0.48
SNX4-205ENST00000482965 ZEB1P37275 1124 aaPredicted RBP12.07□□□□□ -0.48
SNX4-205ENST00000482965 SPATA31A5Q5VU36 1347 aa12.07□□□□□ -0.48
SNX4-205ENST00000482965 SPATA31A7Q8IWB4 1347 aa12.07□□□□□ -0.48
SNX4-205ENST00000482965 ANKRD26Q9UPS8 1709 aa12.06□□□□□ -0.48
SNX4-205ENST00000482965 WASHC2AQ641Q2 1341 aa12.06□□□□□ -0.48
SNX4-205ENST00000482965 BRWD3Q6RI45 1802 aa12.05□□□□□ -0.48
SNX4-205ENST00000482965 A0A0G2JS52 829 aa12.05□□□□□ -0.48
SNX4-205ENST00000482965 MYT1Q01538 1121 aa12.05□□□□□ -0.48
SNX4-205ENST00000482965 LARP1Q6PKG0 1096 aaKnown RBP12.05□□□□□ -0.48
SNX4-205ENST00000482965 AXIN2Q9Y2T1 843 aa12.05□□□□□ -0.48
SNX4-205ENST00000482965 SPATA31A1Q5TZJ5 1347 aa12.05□□□□□ -0.48
SNX4-205ENST00000482965 CSB-PGBD3P0DP91 1061 aa12.04□□□□□ -0.48
SNX4-205ENST00000482965 FAM98CQ17RN3 349 aaKnown RBP12.04□□□□□ -0.48
SNX4-205ENST00000482965 USP35Q9P2H5 1018 aa12.04□□□□□ -0.48
SNX4-205ENST00000482965 KNSTRNQ9Y448 316 aa12.04□□□□□ -0.48
SNX4-205ENST00000482965 CRB1P82279 1406 aa12.03□□□□□ -0.48
SNX4-205ENST00000482965 MAP2P11137 1827 aaKnown RBP12.03□□□□□ -0.48
SNX4-205ENST00000482965 FBLN1P23142 703 aa12.03□□□□□ -0.48
SNX4-205ENST00000482965 AMPHP49418 695 aa12.03□□□□□ -0.48
SNX4-205ENST00000482965 TOM1L2Q6ZVM7 507 aa12.03□□□□□ -0.48
SNX4-205ENST00000482965 SEPT12Q8IYM1 358 aa12.03□□□□□ -0.48
SNX4-205ENST00000482965 MAP3K19Q56UN5 1328 aa12.03□□□□□ -0.48
SNX4-205ENST00000482965 WDR17Q8IZU2 1322 aa12.03□□□□□ -0.48
SNX4-205ENST00000482965 RRS1Q15050 365 aaKnown RBP12.02□□□□□ -0.49
SNX4-205ENST00000482965 TCP11L2Q8N4U5 519 aa12.02□□□□□ -0.49
SNX4-205ENST00000482965 IP6K1Q92551 441 aa12.02□□□□□ -0.49
SNX4-205ENST00000482965 NSD2O96028 1365 aa12.02□□□□□ -0.49
SNX4-205ENST00000482965 BLMP54132 1417 aaPredicted RBP12.02□□□□□ -0.49
SNX4-205ENST00000482965 THSD7AQ9UPZ6 1657 aa12.01□□□□□ -0.49
SNX4-205ENST00000482965 ONECUT3O60422 494 aaPredicted RBP12.01□□□□□ -0.49
SNX4-205ENST00000482965 ANKRD24Q8TF21 1146 aa12.01□□□□□ -0.49
SNX4-205ENST00000482965 THRAP3Q9Y2W1 955 aaKnown RBP12.01□□□□□ -0.49
SNX4-205ENST00000482965 RTL1A6NKG5 1358 aa12.01□□□□□ -0.49
SNX4-205ENST00000482965 WNK3Q9BYP7 1800 aa12□□□□□ -0.49
SNX4-205ENST00000482965 HOXC9P31274 260 aa12□□□□□ -0.49
SNX4-205ENST00000482965 BARGINQ6ZT62 677 aa12□□□□□ -0.49
SNX4-205ENST00000482965 LTV1Q96GA3 475 aaPredicted RBP12□□□□□ -0.49
SNX4-205ENST00000482965 ERBB3P21860 1342 aa12□□□□□ -0.49
SNX4-205ENST00000482965 FAM208AQ9UK61 1670 aaKnown RBP12□□□□□ -0.49
SNX4-205ENST00000482965 TNNT2P45379 298 aaPredicted RBP11.99□□□□□ -0.49
SNX4-205ENST00000482965 MORC1Q86VD1 984 aa11.99□□□□□ -0.49
SNX4-205ENST00000482965 CARD10Q9BWT7 1032 aa11.99□□□□□ -0.49
SNX4-205ENST00000482965 NLRP2Q9NX02 1062 aa11.99□□□□□ -0.49
SNX4-205ENST00000482965 PEAK1Q9H792 1746 aa11.99□□□□□ -0.49
SNX4-205ENST00000482965 RGPD2P0DJD1 1756 aa11.98□□□□□ -0.49
SNX4-205ENST00000482965 FLT4P35916 1363 aa11.98□□□□□ -0.49
SNX4-205ENST00000482965 KIF24Q5T7B8 1368 aa11.98□□□□□ -0.49
SNX4-205ENST00000482965 PPM1GO15355 546 aaPredicted RBP11.98□□□□□ -0.49
SNX4-205ENST00000482965 AMER1Q5JTC6 1135 aaPredicted RBP11.98□□□□□ -0.49
SNX4-205ENST00000482965 KRT27Q7Z3Y8 459 aa11.98□□□□□ -0.49
SNX4-205ENST00000482965 EMILIN1Q9Y6C2 1016 aa11.98□□□□□ -0.49
SNX4-205ENST00000482965 PARP4Q9UKK3 1724 aaKnown RBP11.97□□□□□ -0.49
SNX4-205ENST00000482965 SMG6Q86US8 1419 aaKnown RBP11.97□□□□□ -0.49
SNX4-205ENST00000482965 PER1O15534 1290 aaPredicted RBP11.97□□□□□ -0.49
SNX4-205ENST00000482965 SLC4A2P04920 1241 aa11.97□□□□□ -0.49
SNX4-205ENST00000482965 INSRP06213 1382 aa11.96□□□□□ -0.49
SNX4-205ENST00000482965 CC2D1BQ5T0F9 858 aaKnown RBP11.96□□□□□ -0.49
SNX4-205ENST00000482965 PDE3BQ13370 1112 aa11.95□□□□□ -0.5
SNX4-205ENST00000482965 CNGB1Q14028 1251 aaPredicted RBP11.95□□□□□ -0.5
SNX4-205ENST00000482965 HSP90AB2PQ58FF8 381 aa11.95□□□□□ -0.5
SNX4-205ENST00000482965 UPF1Q92900 1129 aaKnown RBP eCLIP11.95□□□□□ -0.5
SNX4-205ENST00000482965 CDCA7Q9BWT1 371 aaPredicted RBP11.95□□□□□ -0.5
SNX4-205ENST00000482965 POLKQ9UBT6 870 aa11.95□□□□□ -0.5
SNX4-205ENST00000482965 LRRC37A3O60309 1634 aa11.95□□□□□ -0.5
SNX4-205ENST00000482965 DISP2A7MBM2 1401 aa11.94□□□□□ -0.5
SNX4-205ENST00000482965 NPC1L1Q9UHC9 1359 aa11.93□□□□□ -0.5
SNX4-205ENST00000482965 DDB1Q16531 1140 aa11.93□□□□□ -0.5
SNX4-205ENST00000482965 IL2RBP14784 551 aa11.92□□□□□ -0.5
SNX4-205ENST00000482965 FAM182BQ5T319 152 aa11.92□□□□□ -0.5
SNX4-205ENST00000482965 EXOC5O00471 708 aa11.91□□□□□ -0.5
SNX4-205ENST00000482965 ZBTB22O15209 634 aa11.91□□□□□ -0.5
SNX4-205ENST00000482965 NBPF6Q5VWK0 638 aa11.91□□□□□ -0.5
SNX4-205ENST00000482965 NBPF4Q96M43 638 aa11.91□□□□□ -0.5
SNX4-205ENST00000482965 KAT6BQ8WYB5 2073 aa11.91□□□□□ -0.5
SNX4-205ENST00000482965 TNS2Q63HR2 1409 aa11.9□□□□□ -0.5
SNX4-205ENST00000482965 FAM196AQ6ZSG2 479 aa11.9□□□□□ -0.5
SNX4-205ENST00000482965 USHBP1Q8N6Y0 703 aa11.9□□□□□ -0.5
SNX4-205ENST00000482965 RGPD1P0DJD0 1748 aa11.89□□□□□ -0.51
SNX4-205ENST00000482965 SF3B2Q13435 895 aaKnown RBP11.89□□□□□ -0.51
SNX4-205ENST00000482965 EIF4A2Q14240 407 aaKnown RBP11.89□□□□□ -0.51
SNX4-205ENST00000482965 CCDC125Q86Z20 511 aa11.89□□□□□ -0.51
SNX4-205ENST00000482965 OVOS2A0A0G2JMS6 1433 aa11.88□□□□□ -0.51
SNX4-205ENST00000482965 MTHFSP49914 203 aa11.88□□□□□ -0.51
SNX4-205ENST00000482965 DDX10Q13206 875 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms