RNA–Protein interactions for RNA: ENST00000482590.1

CLK1-212, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 626 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-212ENST00000482590 RTL5Q5HYW3 569 aaPredicted RBP11.71□□□□□ -0.53
CLK1-212ENST00000482590 ITPKCQ96DU7 683 aa11.71□□□□□ -0.53
CLK1-212ENST00000482590 TIMELESSQ9UNS1 1208 aa11.71□□□□□ -0.53
CLK1-212ENST00000482590 SOBPA7XYQ1 873 aa11.7□□□□□ -0.54
CLK1-212ENST00000482590 LORP23490 312 aaPredicted RBP11.69□□□□□ -0.54
CLK1-212ENST00000482590 TOP2AP11388 1531 aaKnown RBP11.69□□□□□ -0.54
CLK1-212ENST00000482590 CEP164Q9UPV0 1460 aa11.69□□□□□ -0.54
CLK1-212ENST00000482590 SH3RF1Q7Z6J0 888 aa11.68□□□□□ -0.54
CLK1-212ENST00000482590 ARMC2Q8NEN0 867 aa11.68□□□□□ -0.54
CLK1-212ENST00000482590 C1QTNF2Q9BXJ5 285 aa11.68□□□□□ -0.54
CLK1-212ENST00000482590 CLK2P49760 499 aaKnown RBP11.67□□□□□ -0.54
CLK1-212ENST00000482590 HELBQ8NG08 1087 aaPredicted RBP11.66□□□□□ -0.54
CLK1-212ENST00000482590 SH3BP5LQ7L8J4 393 aa11.65□□□□□ -0.54
CLK1-212ENST00000482590 C6orf118Q5T5N4 469 aa11.64□□□□□ -0.55
CLK1-212ENST00000482590 NBPF14Q5TI25 921 aa11.64□□□□□ -0.55
CLK1-212ENST00000482590 POLR3EQ9NVU0 708 aa11.64□□□□□ -0.55
CLK1-212ENST00000482590 FANCD2Q9BXW9 1451 aa11.63□□□□□ -0.55
CLK1-212ENST00000482590 ZSCAN1Q8NBB4 408 aa11.63□□□□□ -0.55
CLK1-212ENST00000482590 FSHRP23945 695 aa11.62□□□□□ -0.55
CLK1-212ENST00000482590 TRMT44Q8IYL2 757 aaKnown RBP11.62□□□□□ -0.55
CLK1-212ENST00000482590 RSPH6AQ9H0K4 717 aa11.62□□□□□ -0.55
CLK1-212ENST00000482590 MAP4K5Q9Y4K4 846 aa11.62□□□□□ -0.55
CLK1-212ENST00000482590 MAGEB6P1A0A0J9YX57 407 aa11.61□□□□□ -0.55
CLK1-212ENST00000482590 MEIOBQ8N635 442 aa11.61□□□□□ -0.55
CLK1-212ENST00000482590 RSF1Q96T23 1441 aaPredicted RBP11.6□□□□□ -0.55
CLK1-212ENST00000482590 CFTRP13569 1480 aa11.6□□□□□ -0.55
CLK1-212ENST00000482590 MAN1A2O60476 641 aa11.6□□□□□ -0.55
CLK1-212ENST00000482590 CTDSPL2Q05D32 466 aa11.6□□□□□ -0.55
CLK1-212ENST00000482590 VASH1Q7L8A9 365 aaPredicted RBP11.6□□□□□ -0.55
CLK1-212ENST00000482590 LINC00528Q8N1L1 170 aa11.6□□□□□ -0.55
CLK1-212ENST00000482590 BMP2P12643 396 aa11.59□□□□□ -0.55
CLK1-212ENST00000482590 FAM181BA6NEQ2 426 aa11.58□□□□□ -0.56
CLK1-212ENST00000482590 UPP2O95045 317 aa11.58□□□□□ -0.56
CLK1-212ENST00000482590 VSIG8P0DPA2 414 aa11.58□□□□□ -0.56
CLK1-212ENST00000482590 CARD14Q9BXL6 1004 aa11.58□□□□□ -0.56
CLK1-212ENST00000482590 ERFEQ4G0M1 354 aa11.57□□□□□ -0.56
CLK1-212ENST00000482590 GPKOWQ92917 476 aaPredicted RBP eCLIP11.57□□□□□ -0.56
CLK1-212ENST00000482590 FBXO31Q5XUX0 539 aaPredicted RBP11.56□□□□□ -0.56
CLK1-212ENST00000482590 CCDC116Q8IYX3 515 aa11.56□□□□□ -0.56
CLK1-212ENST00000482590 SOS2Q07890 1332 aaPredicted RBP11.56□□□□□ -0.56
CLK1-212ENST00000482590 EMILIN1Q9Y6C2 1016 aa11.55□□□□□ -0.56
CLK1-212ENST00000482590 LRRN4Q8WUT4 740 aa11.54□□□□□ -0.56
CLK1-212ENST00000482590 DNMT3LQ9UJW3 386 aa11.54□□□□□ -0.56
CLK1-212ENST00000482590 URB2Q14146 1524 aaKnown RBP11.54□□□□□ -0.56
CLK1-212ENST00000482590 PPFIA3O75145 1194 aa11.53□□□□□ -0.56
CLK1-212ENST00000482590 TSEN34Q9BSV6 310 aaKnown RBP11.53□□□□□ -0.56
CLK1-212ENST00000482590 PDXDC2PQ6P474 469 aa11.52□□□□□ -0.57
CLK1-212ENST00000482590 FKBPLQ9UIM3 349 aa11.52□□□□□ -0.57
CLK1-212ENST00000482590 SKIV2LQ15477 1246 aaKnown RBP11.51□□□□□ -0.57
CLK1-212ENST00000482590 ERICH6Q7L0X2 663 aa11.51□□□□□ -0.57
CLK1-212ENST00000482590 PPP1R26Q5T8A7 1209 aaPredicted RBP11.5□□□□□ -0.57
CLK1-212ENST00000482590 PROCA1Q8NCQ7 364 aaPredicted RBP11.5□□□□□ -0.57
CLK1-212ENST00000482590 ARHGAP9Q9BRR9 750 aa11.5□□□□□ -0.57
CLK1-212ENST00000482590 NR6A1Q15406 480 aa11.49□□□□□ -0.57
CLK1-212ENST00000482590 SH3D19Q5HYK7 790 aa11.49□□□□□ -0.57
CLK1-212ENST00000482590 HOMEZQ8IX15 550 aa11.49□□□□□ -0.57
CLK1-212ENST00000482590 CBLBQ13191 982 aa11.48□□□□□ -0.57
CLK1-212ENST00000482590 Q6ZVU0 165 aa11.48□□□□□ -0.57
CLK1-212ENST00000482590 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.48□□□□□ -0.57
CLK1-212ENST00000482590 GPBP1L1Q9HC44 474 aaPredicted RBP11.48□□□□□ -0.57
CLK1-212ENST00000482590 CCDC88BA6NC98 1476 aa11.47□□□□□ -0.57
CLK1-212ENST00000482590 TTLL8A6PVC2 850 aa11.47□□□□□ -0.57
CLK1-212ENST00000482590 PPP2R2DQ66LE6 453 aa11.47□□□□□ -0.57
CLK1-212ENST00000482590 KCTD15Q96SI1 283 aaPredicted RBP11.47□□□□□ -0.57
CLK1-212ENST00000482590 OCSTAMPQ9BR26 566 aa11.47□□□□□ -0.57
CLK1-212ENST00000482590 FAM117AQ9C073 453 aa11.47□□□□□ -0.57
CLK1-212ENST00000482590 KDM4CQ9H3R0 1056 aa11.47□□□□□ -0.57
CLK1-212ENST00000482590 PGPEP1Q9NXJ5 209 aa11.47□□□□□ -0.57
CLK1-212ENST00000482590 SLC10A4Q96EP9 437 aa11.46□□□□□ -0.57
CLK1-212ENST00000482590 ZC3H4Q9UPT8 1303 aaKnown RBP11.45□□□□□ -0.58
CLK1-212ENST00000482590 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.45□□□□□ -0.587e-11■■□□□ 12.3
CLK1-212ENST00000482590 ZBTB33Q86T24 672 aa11.45□□□□□ -0.58
CLK1-212ENST00000482590 GTF3C3Q9Y5Q9 886 aa11.45□□□□□ -0.58
CLK1-212ENST00000482590 CDV3Q9UKY7 258 aaKnown RBP11.44□□□□□ -0.58
CLK1-212ENST00000482590 EIF4G3O43432 1585 aaKnown RBP11.44□□□□□ -0.58
CLK1-212ENST00000482590 DNMBPQ6XZF7 1577 aa11.43□□□□□ -0.58
CLK1-212ENST00000482590 FIGNL2A6NMB9 653 aa11.43□□□□□ -0.58
CLK1-212ENST00000482590 SPINT1O43278 529 aa11.43□□□□□ -0.58
CLK1-212ENST00000482590 PTSQ03393 145 aa11.43□□□□□ -0.58
CLK1-212ENST00000482590 DDRGK1Q96HY6 314 aa11.43□□□□□ -0.58
CLK1-212ENST00000482590 TOPBP1Q92547 1522 aa11.43□□□□□ -0.58
CLK1-212ENST00000482590 IFT140Q96RY7 1462 aa11.43□□□□□ -0.58
CLK1-212ENST00000482590 AP1G2O75843 785 aa11.41□□□□□ -0.58
CLK1-212ENST00000482590 PTK2Q05397 1052 aa11.41□□□□□ -0.58
CLK1-212ENST00000482590 DHX9Q08211 1270 aaKnown RBP11.41□□□□□ -0.58
CLK1-212ENST00000482590 INTS6LQ5JSJ4 861 aaKnown RBP11.41□□□□□ -0.58
CLK1-212ENST00000482590 GPR161Q8N6U8 529 aaKnown RBP11.41□□□□□ -0.58
CLK1-212ENST00000482590 EPS8L1Q8TE68 723 aa11.41□□□□□ -0.58
CLK1-212ENST00000482590 ABCC8Q09428 1581 aa11.41□□□□□ -0.58
CLK1-212ENST00000482590 CHD1O14646 1710 aa11.4□□□□□ -0.58
CLK1-212ENST00000482590 ADAM32Q8TC27 787 aa11.4□□□□□ -0.58
CLK1-212ENST00000482590 AGBL1Q96MI9 1066 aa11.4□□□□□ -0.58
CLK1-212ENST00000482590 ATP1B4Q9UN42 357 aaPredicted RBP11.4□□□□□ -0.58
CLK1-212ENST00000482590 GPSM3Q9Y4H4 160 aa11.4□□□□□ -0.58
CLK1-212ENST00000482590 KRT76Q01546 638 aa11.39□□□□□ -0.59
CLK1-212ENST00000482590 HMX1Q9NP08 348 aaPredicted RBP11.39□□□□□ -0.59
CLK1-212ENST00000482590 RIMBP3CA6NJZ7 1639 aa11.38□□□□□ -0.59
CLK1-212ENST00000482590 RIMBP3BA6NNM3 1639 aa11.38□□□□□ -0.59
CLK1-212ENST00000482590 RIMBP3Q9UFD9 1639 aa11.38□□□□□ -0.59
CLK1-212ENST00000482590 ZNF608Q9ULD9 1512 aaPredicted RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms