RNA–Protein interactions for RNA: ENST00000479958.6

COMMD3-212, Transcript of COMM domain containing 3, humanhuman

TSL 2

Gene COMMD3, Length 1,443 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-212ENST00000479958 EMILIN1Q9Y6C2 1016 aa11.46□□□□□ -0.57
COMMD3-212ENST00000479958 POTECB2RU33 542 aa11.45□□□□□ -0.58
COMMD3-212ENST00000479958 ZIC2O95409 532 aaPredicted RBP11.45□□□□□ -0.58
COMMD3-212ENST00000479958 TIMP2P16035 220 aa11.45□□□□□ -0.58
COMMD3-212ENST00000479958 DHX9Q08211 1270 aaKnown RBP11.45□□□□□ -0.58
COMMD3-212ENST00000479958 CCDC116Q8IYX3 515 aa11.45□□□□□ -0.58
COMMD3-212ENST00000479958 OCSTAMPQ9BR26 566 aa11.45□□□□□ -0.58
COMMD3-212ENST00000479958 NR3C2P08235 984 aa11.44□□□□□ -0.58
COMMD3-212ENST00000479958 KLF16Q9BXK1 252 aaPredicted RBP11.44□□□□□ -0.58
COMMD3-212ENST00000479958 MCCD1P59942 119 aaPredicted RBP11.43□□□□□ -0.58
COMMD3-212ENST00000479958 SCARF1Q14162 830 aa11.43□□□□□ -0.58
COMMD3-212ENST00000479958 TRIM52Q96A61 297 aa11.43□□□□□ -0.58
COMMD3-212ENST00000479958 PGPEP1Q9NXJ5 209 aa11.43□□□□□ -0.58
COMMD3-212ENST00000479958 TMEM132AQ24JP5 1023 aa11.43□□□□□ -0.58
COMMD3-212ENST00000479958 ITPKCQ96DU7 683 aa11.43□□□□□ -0.58
COMMD3-212ENST00000479958 NR1H3Q13133 447 aa11.42□□□□□ -0.58
COMMD3-212ENST00000479958 UPP2O95045 317 aa11.41□□□□□ -0.58
COMMD3-212ENST00000479958 FBXO45P0C2W1 286 aa11.4□□□□□ -0.58
COMMD3-212ENST00000479958 PPP1R26Q5T8A7 1209 aaPredicted RBP11.4□□□□□ -0.58
COMMD3-212ENST00000479958 TRIM47Q96LD4 638 aa11.4□□□□□ -0.58
COMMD3-212ENST00000479958 ZFAND3Q9H8U3 227 aa11.4□□□□□ -0.58
COMMD3-212ENST00000479958 PCDHB9Q9Y5E1 797 aa11.4□□□□□ -0.58
COMMD3-212ENST00000479958 MRPL14Q6P1L8 145 aaKnown RBP11.39□□□□□ -0.59
COMMD3-212ENST00000479958 BMP1P13497 986 aa11.38□□□□□ -0.59
COMMD3-212ENST00000479958 TRIM46Q7Z4K8 759 aa11.38□□□□□ -0.59
COMMD3-212ENST00000479958 CCDC125Q86Z20 511 aa11.38□□□□□ -0.59
COMMD3-212ENST00000479958 INTS6LQ5JSJ4 861 aaKnown RBP11.37□□□□□ -0.59
COMMD3-212ENST00000479958 SEPT12Q8IYM1 358 aa11.37□□□□□ -0.59
COMMD3-212ENST00000479958 RAB15P59190 212 aa11.35□□□□□ -0.59
COMMD3-212ENST00000479958 RNF20Q5VTR2 975 aa11.35□□□□□ -0.59
COMMD3-212ENST00000479958 ZFP42Q96MM3 310 aa11.35□□□□□ -0.59
COMMD3-212ENST00000479958 TBC1D2BQ9UPU7 963 aa11.35□□□□□ -0.59
COMMD3-212ENST00000479958 TSEN34Q9BSV6 310 aaKnown RBP11.35□□□□□ -0.59
COMMD3-212ENST00000479958 ESPNB1AK53 854 aa11.34□□□□□ -0.59
COMMD3-212ENST00000479958 SNRPBP14678 240 aaKnown RBP11.34□□□□□ -0.59
COMMD3-212ENST00000479958 PURBQ96QR8 312 aaKnown RBP11.34□□□□□ -0.59
COMMD3-212ENST00000479958 BMP2P12643 396 aa11.33□□□□□ -0.6
COMMD3-212ENST00000479958 FLIIQ13045 1269 aa11.33□□□□□ -0.6
COMMD3-212ENST00000479958 MEIOBQ8N635 442 aa11.33□□□□□ -0.6
COMMD3-212ENST00000479958 ZNF775Q96BV0 537 aaPredicted RBP11.33□□□□□ -0.6
COMMD3-212ENST00000479958 EIF4G2P78344 907 aaKnown RBP eCLIP11.32□□□□□ -0.6
COMMD3-212ENST00000479958 MCM6Q14566 821 aa11.32□□□□□ -0.6
COMMD3-212ENST00000479958 GDPD2Q9HCC8 539 aa11.32□□□□□ -0.6
COMMD3-212ENST00000479958 GIGYF1O75420 1035 aaPredicted RBP11.31□□□□□ -0.6
COMMD3-212ENST00000479958 C6orf118Q5T5N4 469 aa11.31□□□□□ -0.6
COMMD3-212ENST00000479958 ERVH48-1M5A8F1 160 aa11.3□□□□□ -0.6
COMMD3-212ENST00000479958 GPR37L1O60883 481 aa11.3□□□□□ -0.6
COMMD3-212ENST00000479958 ABL2P42684 1182 aa11.3□□□□□ -0.6
COMMD3-212ENST00000479958 WASHC4Q2M389 1173 aa11.3□□□□□ -0.6
COMMD3-212ENST00000479958 Q6ZVU0 165 aa11.3□□□□□ -0.6
COMMD3-212ENST00000479958 WWC1Q8IX03 1113 aa11.3□□□□□ -0.6
COMMD3-212ENST00000479958 LINC00528Q8N1L1 170 aa11.3□□□□□ -0.6
COMMD3-212ENST00000479958 RAD21O60216 631 aa11.28□□□□□ -0.6
COMMD3-212ENST00000479958 CBLBQ13191 982 aa11.28□□□□□ -0.6
COMMD3-212ENST00000479958 TMPRSS4Q9NRS4 437 aa11.28□□□□□ -0.6
COMMD3-212ENST00000479958 ESF1Q9H501 851 aaKnown RBP11.27□□□□□ -0.6
COMMD3-212ENST00000479958 ZNF784Q8NCA9 323 aaPredicted RBP11.26□□□□□ -0.61
COMMD3-212ENST00000479958 IRF5Q13568 498 aa11.26□□□□□ -0.61
COMMD3-212ENST00000479958 MAN1A2O60476 641 aa11.25□□□□□ -0.61
COMMD3-212ENST00000479958 CEP126Q9P2H0 1117 aa11.25□□□□□ -0.61
COMMD3-212ENST00000479958 UBTFP17480 764 aaKnown RBP11.23□□□□□ -0.61
COMMD3-212ENST00000479958 VAC14Q08AM6 782 aa11.23□□□□□ -0.61
COMMD3-212ENST00000479958 COG6Q9Y2V7 657 aa11.23□□□□□ -0.61
COMMD3-212ENST00000479958 LILRA1O75019 489 aa11.22□□□□□ -0.61
COMMD3-212ENST00000479958 RELBQ01201 579 aa11.22□□□□□ -0.61
COMMD3-212ENST00000479958 CYLDQ9NQC7 956 aa11.22□□□□□ -0.61
COMMD3-212ENST00000479958 SPINT1O43278 529 aa11.21□□□□□ -0.61
COMMD3-212ENST00000479958 ADH1AP07327 375 aa11.21□□□□□ -0.61
COMMD3-212ENST00000479958 SOX11P35716 441 aa11.21□□□□□ -0.61
COMMD3-212ENST00000479958 SEMA3FQ13275 785 aa11.21□□□□□ -0.61
COMMD3-212ENST00000479958 AGBL1Q96MI9 1066 aa11.21□□□□□ -0.61
COMMD3-212ENST00000479958 NISCHQ9Y2I1 1504 aa11.21□□□□□ -0.62
COMMD3-212ENST00000479958 TTLL8A6PVC2 850 aa11.2□□□□□ -0.62
COMMD3-212ENST00000479958 ADD1P35611 737 aaKnown RBP11.2□□□□□ -0.62
COMMD3-212ENST00000479958 SLFNL1Q499Z3 407 aa11.2□□□□□ -0.62
COMMD3-212ENST00000479958 CC2D2BQ6DHV5 1058 aa11.2□□□□□ -0.62
COMMD3-212ENST00000479958 TREML4Q6UXN2 200 aa11.2□□□□□ -0.62
COMMD3-212ENST00000479958 SLC16A10Q8TF71 515 aa11.2□□□□□ -0.62
COMMD3-212ENST00000479958 NXF1Q9UBU9 619 aaKnown RBP11.2□□□□□ -0.62
COMMD3-212ENST00000479958 PCDHB11Q9Y5F2 797 aa11.2□□□□□ -0.62
COMMD3-212ENST00000479958 SOS2Q07890 1332 aaPredicted RBP11.2□□□□□ -0.62
COMMD3-212ENST00000479958 TERTO14746 1132 aaKnown RBP11.19□□□□□ -0.62
COMMD3-212ENST00000479958 PTGIRP43119 386 aa11.19□□□□□ -0.62
COMMD3-212ENST00000479958 WFS1O76024 890 aa11.18□□□□□ -0.62
COMMD3-212ENST00000479958 NPAS3Q8IXF0 933 aa11.18□□□□□ -0.62
COMMD3-212ENST00000479958 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.18□□□□□ -0.62
COMMD3-212ENST00000479958 ZNF395Q9H8N7 513 aaPredicted RBP11.18□□□□□ -0.62
COMMD3-212ENST00000479958 ATP5J2-PTCD1G3V325 749 aa11.17□□□□□ -0.62
COMMD3-212ENST00000479958 ERVK-9P63128 1117 aa11.17□□□□□ -0.62
COMMD3-212ENST00000479958 MYCP01106 439 aaPredicted RBP11.16□□□□□ -0.62
COMMD3-212ENST00000479958 POLMQ9NP87 494 aaPredicted RBP11.16□□□□□ -0.62
COMMD3-212ENST00000479958 FIGNL2A6NMB9 653 aa11.15□□□□□ -0.62
COMMD3-212ENST00000479958 SOBPA7XYQ1 873 aa11.15□□□□□ -0.62
COMMD3-212ENST00000479958 CYP2U1Q7Z449 544 aa11.15□□□□□ -0.62
COMMD3-212ENST00000479958 RNF135Q8IUD6 432 aa11.15□□□□□ -0.62
COMMD3-212ENST00000479958 INSM2Q96T92 566 aaPredicted RBP11.15□□□□□ -0.62
COMMD3-212ENST00000479958 USP4Q13107 963 aa11.14□□□□□ -0.63
COMMD3-212ENST00000479958 SIRT1Q96EB6 747 aa11.14□□□□□ -0.63
COMMD3-212ENST00000479958 DNMT3LQ9UJW3 386 aa11.14□□□□□ -0.63
COMMD3-212ENST00000479958 NFX1Q12986 1120 aaKnown RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms