RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 KIF24Q5T7B8 1368 aa17.66■□□□□ 0.42
CHD3-210ENST00000479080 AXIN2Q9Y2T1 843 aa17.66■□□□□ 0.42
CHD3-210ENST00000479080 RGPD1P0DJD0 1748 aa17.65■□□□□ 0.42
CHD3-210ENST00000479080 PPM1GO15355 546 aaPredicted RBP17.65■□□□□ 0.42
CHD3-210ENST00000479080 IL13P35225 146 aa17.65■□□□□ 0.42
CHD3-210ENST00000479080 IP6K1Q92551 441 aa17.65■□□□□ 0.42
CHD3-210ENST00000479080 EIF4A2Q14240 407 aaKnown RBP17.64■□□□□ 0.41
CHD3-210ENST00000479080 CHRNA2Q15822 529 aa17.64■□□□□ 0.41
CHD3-210ENST00000479080 CAMTA1Q9Y6Y1 1673 aa17.64■□□□□ 0.41
CHD3-210ENST00000479080 ZBTB7CA1YPR0 619 aa17.62■□□□□ 0.41
CHD3-210ENST00000479080 AMPHP49418 695 aa17.62■□□□□ 0.41
CHD3-210ENST00000479080 RGPD5Q99666 1765 aa17.61■□□□□ 0.41
CHD3-210ENST00000479080 FAM83GA6ND36 823 aa17.61■□□□□ 0.41
CHD3-210ENST00000479080 BLMP54132 1417 aaPredicted RBP17.61■□□□□ 0.41
CHD3-210ENST00000479080 DIAPH1O60610 1272 aaKnown RBP17.6■□□□□ 0.41
CHD3-210ENST00000479080 CFAP53Q96M91 514 aa17.6■□□□□ 0.41
CHD3-210ENST00000479080 COL14A1Q05707 1796 aaKnown RBP17.59■□□□□ 0.41
CHD3-210ENST00000479080 COL5A2P05997 1499 aaPredicted RBP17.59■□□□□ 0.41
CHD3-210ENST00000479080 NCAPD2Q15021 1401 aa17.59■□□□□ 0.41
CHD3-210ENST00000479080 PLCH1Q4KWH8 1693 aa17.58■□□□□ 0.41
CHD3-210ENST00000479080 ERBB3P21860 1342 aa17.58■□□□□ 0.4
CHD3-210ENST00000479080 SPATA31A6Q5VVP1 1343 aa17.58■□□□□ 0.4
CHD3-210ENST00000479080 NUTM2BA6NNL0 878 aaPredicted RBP17.58■□□□□ 0.4
CHD3-210ENST00000479080 NUTM2EB1AL46 878 aaPredicted RBP17.58■□□□□ 0.4
CHD3-210ENST00000479080 NUTM2AQ8IVF1 878 aaPredicted RBP17.58■□□□□ 0.4
CHD3-210ENST00000479080 PRDM11Q9NQV5 511 aa17.58■□□□□ 0.4
CHD3-210ENST00000479080 ADAMTS8Q9UP79 889 aa17.58■□□□□ 0.4
CHD3-210ENST00000479080 NRAPQ86VF7 1730 aa17.58■□□□□ 0.4
CHD3-210ENST00000479080 HAP1P54257 671 aaPredicted RBP17.57■□□□□ 0.4
CHD3-210ENST00000479080 FAM9BQ8IZU0 186 aa17.57■□□□□ 0.4
CHD3-210ENST00000479080 SLIT2O94813 1529 aa17.57■□□□□ 0.4
CHD3-210ENST00000479080 RGPD2P0DJD1 1756 aa17.56■□□□□ 0.4
CHD3-210ENST00000479080 IGSF1Q8N6C5 1336 aa17.56■□□□□ 0.4
CHD3-210ENST00000479080 FAM208AQ9UK61 1670 aaKnown RBP17.56■□□□□ 0.4
CHD3-210ENST00000479080 ADAMTS2O95450 1211 aa17.56■□□□□ 0.4
CHD3-210ENST00000479080 ANKRD24Q8TF21 1146 aa17.56■□□□□ 0.4
CHD3-210ENST00000479080 LTV1Q96GA3 475 aaPredicted RBP17.56■□□□□ 0.4
CHD3-210ENST00000479080 EYA1Q99502 592 aa17.56■□□□□ 0.4
CHD3-210ENST00000479080 AEBP1Q8IUX7 1158 aa17.55■□□□□ 0.4
CHD3-210ENST00000479080 NBPF6Q5VWK0 638 aa17.54■□□□□ 0.4
CHD3-210ENST00000479080 NBPF4Q96M43 638 aa17.54■□□□□ 0.4
CHD3-210ENST00000479080 U2SURPO15042 1029 aaKnown RBP17.53■□□□□ 0.4
CHD3-210ENST00000479080 RSPH6AQ9H0K4 717 aa17.53■□□□□ 0.4
CHD3-210ENST00000479080 KDRP35968 1356 aa17.53■□□□□ 0.4
CHD3-210ENST00000479080 USHBP1Q8N6Y0 703 aa17.52■□□□□ 0.4
CHD3-210ENST00000479080 HMOX1P09601 288 aa17.51■□□□□ 0.39
CHD3-210ENST00000479080 U2AF1L5P0DN76 240 aaPredicted RBP17.51■□□□□ 0.39
CHD3-210ENST00000479080 U2AF1Q01081 240 aaKnown RBP eCLIP17.51■□□□□ 0.39
CHD3-210ENST00000479080 WDR43Q15061 677 aaKnown RBP eCLIP17.51■□□□□ 0.39
CHD3-210ENST00000479080 PLEKHF1Q96S99 279 aa17.51■□□□□ 0.39
CHD3-210ENST00000479080 BTG4Q9NY30 223 aa17.51■□□□□ 0.39
CHD3-210ENST00000479080 BCL9LQ86UU0 1499 aa17.5■□□□□ 0.39
CHD3-210ENST00000479080 WDR17Q8IZU2 1322 aa17.5■□□□□ 0.39
CHD3-210ENST00000479080 CCDC146Q8IYE0 955 aa17.5■□□□□ 0.39
CHD3-210ENST00000479080 NUDCQ9Y266 331 aa17.5■□□□□ 0.39
CHD3-210ENST00000479080 NWD2Q9ULI1 1742 aa17.5■□□□□ 0.39
CHD3-210ENST00000479080 LARP1Q6PKG0 1096 aaKnown RBP17.49■□□□□ 0.39
CHD3-210ENST00000479080 SENP3-EIF4A1A0A087X0R7 540 aa17.48■□□□□ 0.39
CHD3-210ENST00000479080 SULT6B1Q6IMI4 303 aa17.48■□□□□ 0.39
CHD3-210ENST00000479080 C8orf37Q96NL8 207 aa17.47■□□□□ 0.39
CHD3-210ENST00000479080 MEGF6O75095 1541 aa17.47■□□□□ 0.39
CHD3-210ENST00000479080 PRKAR2BP31323 418 aa17.46■□□□□ 0.39
CHD3-210ENST00000479080 FNBP4Q8N3X1 1017 aaPredicted RBP17.46■□□□□ 0.39
CHD3-210ENST00000479080 STRN4Q9NRL3 753 aa17.46■□□□□ 0.39
CHD3-210ENST00000479080 CRB1P82279 1406 aa17.46■□□□□ 0.39
CHD3-210ENST00000479080 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.45■□□□□ 0.38
CHD3-210ENST00000479080 FCHSD2O94868 740 aa17.45■□□□□ 0.38
CHD3-210ENST00000479080 PHACTR3Q96KR7 559 aa17.45■□□□□ 0.38
CHD3-210ENST00000479080 NLRP2Q9NX02 1062 aa17.44■□□□□ 0.38
CHD3-210ENST00000479080 DISP2A7MBM2 1401 aa17.44■□□□□ 0.38
CHD3-210ENST00000479080 CSB-PGBD3P0DP91 1061 aa17.43■□□□□ 0.38
CHD3-210ENST00000479080 RUNDC1Q96C34 613 aa17.43■□□□□ 0.38
CHD3-210ENST00000479080 CARD10Q9BWT7 1032 aa17.42■□□□□ 0.38
CHD3-210ENST00000479080 AFF2P51816 1311 aa17.42■□□□□ 0.38
CHD3-210ENST00000479080 WNK3Q9BYP7 1800 aa17.42■□□□□ 0.38
CHD3-210ENST00000479080 APAF1O14727 1248 aa17.41■□□□□ 0.38
CHD3-210ENST00000479080 TOM1L2Q6ZVM7 507 aa17.41■□□□□ 0.38
CHD3-210ENST00000479080 UNC5CLQ8IV45 518 aa17.41■□□□□ 0.38
CHD3-210ENST00000479080 NGLY1Q96IV0 654 aa17.41■□□□□ 0.38
CHD3-210ENST00000479080 YTHDC1Q96MU7 727 aaKnown RBP17.41■□□□□ 0.38
CHD3-210ENST00000479080 ATRNO75882 1429 aa17.4■□□□□ 0.38
CHD3-210ENST00000479080 TCP11L2Q8N4U5 519 aa17.4■□□□□ 0.38
CHD3-210ENST00000479080 SPATA31A1Q5TZJ5 1347 aa17.4■□□□□ 0.38
CHD3-210ENST00000479080 SPATA31A5Q5VU36 1347 aa17.4■□□□□ 0.38
CHD3-210ENST00000479080 SPATA31A7Q8IWB4 1347 aa17.4■□□□□ 0.38
CHD3-210ENST00000479080 GLI3P10071 1580 aa17.4■□□□□ 0.38
CHD3-210ENST00000479080 OVOS2A0A0G2JMS6 1433 aa17.39■□□□□ 0.38
CHD3-210ENST00000479080 EVA1CP58658 441 aa17.39■□□□□ 0.37
CHD3-210ENST00000479080 MEX3CQ5U5Q3 659 aaKnown RBP17.39■□□□□ 0.37
CHD3-210ENST00000479080 RRP7AQ9Y3A4 280 aaKnown RBP17.39■□□□□ 0.37
CHD3-210ENST00000479080 PKD1L3Q7Z443 1732 aa17.38■□□□□ 0.37
CHD3-210ENST00000479080 SHANK3Q9BYB0 1731 aa17.38■□□□□ 0.37
CHD3-210ENST00000479080 HNRNPUQ00839 825 aaKnown RBP eCLIP17.38■□□□□ 0.37
CHD3-210ENST00000479080 MTHFSDQ2M296 383 aaKnown RBP17.38■□□□□ 0.37
CHD3-210ENST00000479080 PHF23Q9BUL5 403 aaPredicted RBP17.38■□□□□ 0.37
CHD3-210ENST00000479080 TMPOP42166 694 aaKnown RBP17.37■□□□□ 0.37
CHD3-210ENST00000479080 VPS72Q15906 364 aa17.37■□□□□ 0.37
CHD3-210ENST00000479080 USP21Q9UK80 565 aa17.37■□□□□ 0.37
CHD3-210ENST00000479080 ZNF521Q96K83 1311 aa17.37■□□□□ 0.37
CHD3-210ENST00000479080 PARP4Q9UKK3 1724 aaKnown RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms