RNA–Protein interactions for RNA: ENST00000475482.5

CPSF3-203, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 4

Gene CPSF3, Length 871 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-203ENST00000475482 NME9Q86XW9 330 aa21.83■■□□□ 1.09
CPSF3-203ENST00000475482 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.83■■□□□ 1.09
CPSF3-203ENST00000475482 USP35Q9P2H5 1018 aa21.82■■□□□ 1.08
CPSF3-203ENST00000475482 PARP4Q9UKK3 1724 aaKnown RBP21.82■■□□□ 1.08
CPSF3-203ENST00000475482 OVOS2A0A0J9YW53 1432 aa21.8■■□□□ 1.08
CPSF3-203ENST00000475482 OVOS2Q6IE36 1432 aa21.8■■□□□ 1.08
CPSF3-203ENST00000475482 RGPD1P0DJD0 1748 aa21.8■■□□□ 1.08
CPSF3-203ENST00000475482 WDR17Q8IZU2 1322 aa21.8■■□□□ 1.08
CPSF3-203ENST00000475482 TMF1P82094 1093 aa21.79■■□□□ 1.08
CPSF3-203ENST00000475482 FAM182BQ5T319 152 aa21.79■■□□□ 1.08
CPSF3-203ENST00000475482 DEFB132Q7Z7B7 95 aa21.79■■□□□ 1.08
CPSF3-203ENST00000475482 ZBTB7CA1YPR0 619 aa21.78■■□□□ 1.08
CPSF3-203ENST00000475482 WNK3Q9BYP7 1800 aa21.78■■□□□ 1.08
CPSF3-203ENST00000475482 TNS1Q9HBL0 1735 aaKnown RBP21.77■■□□□ 1.08
CPSF3-203ENST00000475482 ANKRD36BQ8N2N9 1353 aa21.77■■□□□ 1.08
CPSF3-203ENST00000475482 LTN1O94822 1766 aa21.77■■□□□ 1.08
CPSF3-203ENST00000475482 SF3B2Q13435 895 aaKnown RBP21.77■■□□□ 1.08
CPSF3-203ENST00000475482 DISP2A7MBM2 1401 aa21.77■■□□□ 1.08
CPSF3-203ENST00000475482 ZNF316A6NFI3 1004 aaPredicted RBP21.76■■□□□ 1.07
CPSF3-203ENST00000475482 SOX12O15370 315 aa21.76■■□□□ 1.07
CPSF3-203ENST00000475482 FAM196AQ6ZSG2 479 aa21.76■■□□□ 1.07
CPSF3-203ENST00000475482 TOM1L2Q6ZVM7 507 aa21.74■■□□□ 1.07
CPSF3-203ENST00000475482 CARD10Q9BWT7 1032 aa21.74■■□□□ 1.07
CPSF3-203ENST00000475482 LRRC37A3O60309 1634 aa21.73■■□□□ 1.07
CPSF3-203ENST00000475482 PEAK1Q9H792 1746 aa21.73■■□□□ 1.07
CPSF3-203ENST00000475482 BAG6P46379 1132 aa21.73■■□□□ 1.07
CPSF3-203ENST00000475482 PDE3BQ13370 1112 aa21.73■■□□□ 1.07
CPSF3-203ENST00000475482 CDCA8Q53HL2 280 aa21.73■■□□□ 1.07
CPSF3-203ENST00000475482 MYOM1P52179 1685 aa21.7■■□□□ 1.06
CPSF3-203ENST00000475482 CDCA7Q9BWT1 371 aaPredicted RBP21.7■■□□□ 1.06
CPSF3-203ENST00000475482 ERBB3P21860 1342 aa21.7■■□□□ 1.06
CPSF3-203ENST00000475482 CCDC7Q96M83 1385 aa21.69■■□□□ 1.06
CPSF3-203ENST00000475482 C11orf95C9JLR9 678 aaPredicted RBP21.68■■□□□ 1.06
CPSF3-203ENST00000475482 TRIM37O94972 964 aa21.68■■□□□ 1.06
CPSF3-203ENST00000475482 SBF2Q86WG5 1849 aa21.68■■□□□ 1.06
CPSF3-203ENST00000475482 SRCAPQ6ZRS2 3230 aa21.67■■□□□ 1.06
CPSF3-203ENST00000475482 FYB1O15117 783 aa21.67■■□□□ 1.06
CPSF3-203ENST00000475482 CSB-PGBD3P0DP91 1061 aa21.67■■□□□ 1.06
CPSF3-203ENST00000475482 EN1Q05925 392 aaPredicted RBP21.67■■□□□ 1.06
CPSF3-203ENST00000475482 DDB1Q16531 1140 aa21.67■■□□□ 1.06
CPSF3-203ENST00000475482 COG3Q96JB2 828 aa21.67■■□□□ 1.06
CPSF3-203ENST00000475482 BCL9O00512 1426 aa21.66■■□□□ 1.06
CPSF3-203ENST00000475482 IP6K1Q92551 441 aa21.66■■□□□ 1.06
CPSF3-203ENST00000475482 OVOS2A0A0G2JMS6 1433 aa21.65■■□□□ 1.06
CPSF3-203ENST00000475482 CAMKK2Q96RR4 588 aa21.65■■□□□ 1.06
CPSF3-203ENST00000475482 CARD14Q9BXL6 1004 aa21.63■■□□□ 1.05
CPSF3-203ENST00000475482 KIF20BQ96Q89 1820 aa21.63■■□□□ 1.05
CPSF3-203ENST00000475482 PARD3Q8TEW0 1356 aa21.62■■□□□ 1.05
CPSF3-203ENST00000475482 MAP3K19Q56UN5 1328 aa21.62■■□□□ 1.05
CPSF3-203ENST00000475482 MARCH10Q8NA82 808 aaPredicted RBP21.62■■□□□ 1.05
CPSF3-203ENST00000475482 ANKRD24Q8TF21 1146 aa21.62■■□□□ 1.05
CPSF3-203ENST00000475482 FAM208AQ9UK61 1670 aaKnown RBP21.62■■□□□ 1.05
CPSF3-203ENST00000475482 EIF4G2P78344 907 aaKnown RBP eCLIP21.61■■□□□ 1.05
CPSF3-203ENST00000475482 EZH2Q15910 746 aaKnown RBP21.61■■□□□ 1.05
CPSF3-203ENST00000475482 RREB1Q92766 1687 aa21.6■■□□□ 1.05
CPSF3-203ENST00000475482 APBA3O96018 575 aa21.6■■□□□ 1.05
CPSF3-203ENST00000475482 FBLN1P23142 703 aa21.6■■□□□ 1.05
CPSF3-203ENST00000475482 GGNBP2Q9H3C7 697 aa21.6■■□□□ 1.05
CPSF3-203ENST00000475482 HOXC9P31274 260 aa21.59■■□□□ 1.05
CPSF3-203ENST00000475482 TNS2Q63HR2 1409 aa21.59■■□□□ 1.05
CPSF3-203ENST00000475482 NLRP2Q9NX02 1062 aa21.59■■□□□ 1.05
CPSF3-203ENST00000475482 EXOC5O00471 708 aa21.58■■□□□ 1.05
CPSF3-203ENST00000475482 HSPA5P11021 654 aaKnown RBP21.58■■□□□ 1.05
CPSF3-203ENST00000475482 RGPD3A6NKT7 1758 aaPredicted RBP21.58■■□□□ 1.04
CPSF3-203ENST00000475482 RGPD4Q7Z3J3 1758 aa21.58■■□□□ 1.04
CPSF3-203ENST00000475482 RTL1A6NKG5 1358 aa21.57■■□□□ 1.04
CPSF3-203ENST00000475482 NSD3Q9BZ95 1437 aa21.56■■□□□ 1.04
CPSF3-203ENST00000475482 IL2RBP14784 551 aa21.56■■□□□ 1.04
CPSF3-203ENST00000475482 BCL11BQ9C0K0 894 aaPredicted RBP21.55■■□□□ 1.04
CPSF3-203ENST00000475482 RGPD2P0DJD1 1756 aa21.55■■□□□ 1.04
CPSF3-203ENST00000475482 NUP188Q5SRE5 1749 aa21.55■■□□□ 1.04
CPSF3-203ENST00000475482 PLSCR1O15162 318 aa21.54■■□□□ 1.04
CPSF3-203ENST00000475482 RRS1Q15050 365 aaKnown RBP21.54■■□□□ 1.04
CPSF3-203ENST00000475482 KIF24Q5T7B8 1368 aa21.53■■□□□ 1.04
CPSF3-203ENST00000475482 AMPHP49418 695 aa21.53■■□□□ 1.04
CPSF3-203ENST00000475482 PTF1AQ7RTS3 328 aa21.53■■□□□ 1.04
CPSF3-203ENST00000475482 LRP5O75197 1615 aa21.51■■□□□ 1.03
CPSF3-203ENST00000475482 ANKRD26Q9UPS8 1709 aa21.5■■□□□ 1.03
CPSF3-203ENST00000475482 PSDA5PKW4 1024 aaPredicted RBP21.5■■□□□ 1.03
CPSF3-203ENST00000475482 LTV1Q96GA3 475 aaPredicted RBP21.5■■□□□ 1.03
CPSF3-203ENST00000475482 INSRP06213 1382 aa21.49■■□□□ 1.03
CPSF3-203ENST00000475482 NHSQ6T4R5 1651 aa21.49■■□□□ 1.03
CPSF3-203ENST00000475482 CGNL1Q0VF96 1302 aa21.49■■□□□ 1.03
CPSF3-203ENST00000475482 MAP2P11137 1827 aaKnown RBP21.48■■□□□ 1.03
CPSF3-203ENST00000475482 FLT4P35916 1363 aa21.48■■□□□ 1.03
CPSF3-203ENST00000475482 R3HDM1Q15032 1099 aaKnown RBP21.47■■□□□ 1.03
CPSF3-203ENST00000475482 HSP90AB2PQ58FF8 381 aa21.46■■□□□ 1.03
CPSF3-203ENST00000475482 NBPF6Q5VWK0 638 aa21.46■■□□□ 1.03
CPSF3-203ENST00000475482 NBPF4Q96M43 638 aa21.46■■□□□ 1.03
CPSF3-203ENST00000475482 SHANK3Q9BYB0 1731 aa21.46■■□□□ 1.03
CPSF3-203ENST00000475482 KAT6BQ8WYB5 2073 aa21.45■■□□□ 1.02
CPSF3-203ENST00000475482 PROM2Q8N271 834 aa21.45■■□□□ 1.02
CPSF3-203ENST00000475482 KCNQ2O43526 872 aa21.44■■□□□ 1.02
CPSF3-203ENST00000475482 DIEXFQ68CQ4 756 aaKnown RBP21.44■■□□□ 1.02
CPSF3-203ENST00000475482 MEGF6O75095 1541 aa21.44■■□□□ 1.02
CPSF3-203ENST00000475482 PANK3Q9H999 370 aa21.43■■□□□ 1.02
CPSF3-203ENST00000475482 EMILIN1Q9Y6C2 1016 aa21.43■■□□□ 1.02
CPSF3-203ENST00000475482 SMG6Q86US8 1419 aaKnown RBP21.43■■□□□ 1.02
CPSF3-203ENST00000475482 NCAPD2Q15021 1401 aa21.42■■□□□ 1.02
CPSF3-203ENST00000475482 NBPF14Q5TI25 921 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms