RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 AXIN2Q9Y2T1 843 aa23.28■■□□□ 1.32
SCAF11-206ENST00000474828 GLI3P10071 1580 aa23.27■■□□□ 1.32
SCAF11-206ENST00000474828 ONECUT3O60422 494 aaPredicted RBP23.27■■□□□ 1.32
SCAF11-206ENST00000474828 GJD4Q96KN9 370 aaPredicted RBP23.27■■□□□ 1.32
SCAF11-206ENST00000474828 KNSTRNQ9Y448 316 aa23.27■■□□□ 1.32
SCAF11-206ENST00000474828 RXRBP28702 533 aa23.26■■□□□ 1.31
SCAF11-206ENST00000474828 LTN1O94822 1766 aa23.26■■□□□ 1.31
SCAF11-206ENST00000474828 MAP3K19Q56UN5 1328 aa23.25■■□□□ 1.31
SCAF11-206ENST00000474828 SPATA31A5Q5VU36 1347 aa23.25■■□□□ 1.31
SCAF11-206ENST00000474828 SPATA31A7Q8IWB4 1347 aa23.25■■□□□ 1.31
SCAF11-206ENST00000474828 RTL1A6NKG5 1358 aa23.25■■□□□ 1.31
SCAF11-206ENST00000474828 BLMP54132 1417 aaPredicted RBP23.25■■□□□ 1.31
SCAF11-206ENST00000474828 IP6K1Q92551 441 aa23.24■■□□□ 1.31
SCAF11-206ENST00000474828 SOX12O15370 315 aa23.22■■□□□ 1.31
SCAF11-206ENST00000474828 FBLN1P23142 703 aa23.21■■□□□ 1.31
SCAF11-206ENST00000474828 SPATA31A1Q5TZJ5 1347 aa23.21■■□□□ 1.31
SCAF11-206ENST00000474828 WDR17Q8IZU2 1322 aa23.21■■□□□ 1.31
SCAF11-206ENST00000474828 SMG6Q86US8 1419 aaKnown RBP23.21■■□□□ 1.31
SCAF11-206ENST00000474828 RGS12O14924 1447 aa23.19■■□□□ 1.3
SCAF11-206ENST00000474828 CRB1P82279 1406 aa23.19■■□□□ 1.3
SCAF11-206ENST00000474828 ERBB3P21860 1342 aa23.19■■□□□ 1.3
SCAF11-206ENST00000474828 HOXC9P31274 260 aa23.19■■□□□ 1.3
SCAF11-206ENST00000474828 LARP1Q6PKG0 1096 aaKnown RBP23.19■■□□□ 1.3
SCAF11-206ENST00000474828 PEAK1Q9H792 1746 aa23.19■■□□□ 1.3
SCAF11-206ENST00000474828 RGPD5Q99666 1765 aa23.18■■□□□ 1.3
SCAF11-206ENST00000474828 RRS1Q15050 365 aaKnown RBP23.17■■□□□ 1.3
SCAF11-206ENST00000474828 POLKQ9UBT6 870 aa23.17■■□□□ 1.3
SCAF11-206ENST00000474828 INSRP06213 1382 aa23.16■■□□□ 1.3
SCAF11-206ENST00000474828 FLT4P35916 1363 aa23.16■■□□□ 1.3
SCAF11-206ENST00000474828 EVA1CP58658 441 aa23.16■■□□□ 1.3
SCAF11-206ENST00000474828 BARGINQ6ZT62 677 aa23.16■■□□□ 1.3
SCAF11-206ENST00000474828 THRAP3Q9Y2W1 955 aaKnown RBP23.16■■□□□ 1.3
SCAF11-206ENST00000474828 THSD7AQ9UPZ6 1657 aa23.16■■□□□ 1.3
SCAF11-206ENST00000474828 STRN4Q9NRL3 753 aa23.15■■□□□ 1.3
SCAF11-206ENST00000474828 CARD10Q9BWT7 1032 aa23.14■■□□□ 1.29
SCAF11-206ENST00000474828 FAM208AQ9UK61 1670 aaKnown RBP23.13■■□□□ 1.29
SCAF11-206ENST00000474828 ZBTB7CA1YPR0 619 aa23.13■■□□□ 1.29
SCAF11-206ENST00000474828 MORC1Q86VD1 984 aa23.13■■□□□ 1.29
SCAF11-206ENST00000474828 UPF1Q92900 1129 aaKnown RBP eCLIP23.13■■□□□ 1.29
SCAF11-206ENST00000474828 EMILIN1Q9Y6C2 1016 aa23.13■■□□□ 1.29
SCAF11-206ENST00000474828 AMPHP49418 695 aa23.12■■□□□ 1.29
SCAF11-206ENST00000474828 ANKRD24Q8TF21 1146 aa23.12■■□□□ 1.29
SCAF11-206ENST00000474828 MAP2P11137 1827 aaKnown RBP23.12■■□□□ 1.29
SCAF11-206ENST00000474828 TCP11L2Q8N4U5 519 aa23.11■■□□□ 1.29
SCAF11-206ENST00000474828 DISP2A7MBM2 1401 aa23.1■■□□□ 1.29
SCAF11-206ENST00000474828 HSP90AB2PQ58FF8 381 aa23.09■■□□□ 1.29
SCAF11-206ENST00000474828 CCDC9Q9Y3X0 531 aaKnown RBP23.09■■□□□ 1.29
SCAF11-206ENST00000474828 NCAPD2Q15021 1401 aa23.08■■□□□ 1.29
SCAF11-206ENST00000474828 TOM1L2Q6ZVM7 507 aa23.08■■□□□ 1.29
SCAF11-206ENST00000474828 ZNF316A6NFI3 1004 aaPredicted RBP23.07■■□□□ 1.28
SCAF11-206ENST00000474828 FAM98CQ17RN3 349 aaKnown RBP23.07■■□□□ 1.28
SCAF11-206ENST00000474828 CC2D1BQ5T0F9 858 aaKnown RBP23.07■■□□□ 1.28
SCAF11-206ENST00000474828 SEPT12Q8IYM1 358 aa23.07■■□□□ 1.28
SCAF11-206ENST00000474828 PARP4Q9UKK3 1724 aaKnown RBP23.06■■□□□ 1.28
SCAF11-206ENST00000474828 WNK3Q9BYP7 1800 aa23.05■■□□□ 1.28
SCAF11-206ENST00000474828 DDX10Q13206 875 aaKnown RBP23.05■■□□□ 1.28
SCAF11-206ENST00000474828 CDCA7Q9BWT1 371 aaPredicted RBP23.05■■□□□ 1.28
SCAF11-206ENST00000474828 TNNT2P45379 298 aaPredicted RBP23.04■■□□□ 1.28
SCAF11-206ENST00000474828 PARD3Q8TEW0 1356 aa23.03■■□□□ 1.28
SCAF11-206ENST00000474828 CSB-PGBD3P0DP91 1061 aa23.03■■□□□ 1.28
SCAF11-206ENST00000474828 BRWD3Q6RI45 1802 aa23.02■■□□□ 1.28
SCAF11-206ENST00000474828 NBPF6Q5VWK0 638 aa23.01■■□□□ 1.27
SCAF11-206ENST00000474828 NBPF4Q96M43 638 aa23.01■■□□□ 1.27
SCAF11-206ENST00000474828 NLRP2Q9NX02 1062 aa23.01■■□□□ 1.27
SCAF11-206ENST00000474828 USP35Q9P2H5 1018 aa23.01■■□□□ 1.27
SCAF11-206ENST00000474828 EP400Q96L91 3159 aa23.01■■□□□ 1.27
SCAF11-206ENST00000474828 MTHFSP49914 203 aa22.99■■□□□ 1.27
SCAF11-206ENST00000474828 EIF4A2Q14240 407 aaKnown RBP22.99■■□□□ 1.27
SCAF11-206ENST00000474828 PLEKHG2Q9H7P9 1386 aa22.99■■□□□ 1.27
SCAF11-206ENST00000474828 LRRC37A3O60309 1634 aa22.98■■□□□ 1.27
SCAF11-206ENST00000474828 LTV1Q96GA3 475 aaPredicted RBP22.98■■□□□ 1.27
SCAF11-206ENST00000474828 RGPD2P0DJD1 1756 aa22.98■■□□□ 1.27
SCAF11-206ENST00000474828 COL3A1P02461 1466 aaPredicted RBP22.98■■□□□ 1.27
SCAF11-206ENST00000474828 PPM1GO15355 546 aaPredicted RBP22.97■■□□□ 1.27
SCAF11-206ENST00000474828 KRT27Q7Z3Y8 459 aa22.97■■□□□ 1.27
SCAF11-206ENST00000474828 RGPD1P0DJD0 1748 aa22.96■■□□□ 1.27
SCAF11-206ENST00000474828 BCL9O00512 1426 aa22.95■■□□□ 1.26
SCAF11-206ENST00000474828 IL2RBP14784 551 aa22.95■■□□□ 1.26
SCAF11-206ENST00000474828 PPP2R1AP30153 589 aa22.95■■□□□ 1.26
SCAF11-206ENST00000474828 IL13P35225 146 aa22.95■■□□□ 1.26
SCAF11-206ENST00000474828 IGSF1Q8N6C5 1336 aa22.95■■□□□ 1.26
SCAF11-206ENST00000474828 EYA1Q99502 592 aa22.95■■□□□ 1.26
SCAF11-206ENST00000474828 TNS2Q63HR2 1409 aa22.94■■□□□ 1.26
SCAF11-206ENST00000474828 OVOS2A0A0G2JMS6 1433 aa22.93■■□□□ 1.26
SCAF11-206ENST00000474828 RALBP1Q15311 655 aa22.93■■□□□ 1.26
SCAF11-206ENST00000474828 MEGF6O75095 1541 aa22.92■■□□□ 1.26
SCAF11-206ENST00000474828 DDB1Q16531 1140 aa22.92■■□□□ 1.26
SCAF11-206ENST00000474828 KDRP35968 1356 aa22.91■■□□□ 1.26
SCAF11-206ENST00000474828 EXOC5O00471 708 aa22.88■■□□□ 1.25
SCAF11-206ENST00000474828 A0A0G2JS52 829 aa22.87■■□□□ 1.25
SCAF11-206ENST00000474828 MYT1Q01538 1121 aa22.87■■□□□ 1.25
SCAF11-206ENST00000474828 PDE3BQ13370 1112 aa22.87■■□□□ 1.25
SCAF11-206ENST00000474828 USHBP1Q8N6Y0 703 aa22.87■■□□□ 1.25
SCAF11-206ENST00000474828 MARCH10Q8NA82 808 aaPredicted RBP22.87■■□□□ 1.25
SCAF11-206ENST00000474828 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.87■■□□□ 1.256e-11■■■■□ 26.7
SCAF11-206ENST00000474828 SHANK3Q9BYB0 1731 aa22.86■■□□□ 1.25
SCAF11-206ENST00000474828 DIAPH1O60610 1272 aaKnown RBP22.86■■□□□ 1.25
SCAF11-206ENST00000474828 PKD1L3Q7Z443 1732 aa22.85■■□□□ 1.25
SCAF11-206ENST00000474828 FAM196AQ6ZSG2 479 aa22.85■■□□□ 1.25
SCAF11-206ENST00000474828 CCDC125Q86Z20 511 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms