RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 SPATA31A1Q5TZJ5 1347 aa26.33■■□□□ 1.81
PTCD3-210ENST00000473829 FAM98CQ17RN3 349 aaKnown RBP26.32■■□□□ 1.8
PTCD3-210ENST00000473829 AXIN2Q9Y2T1 843 aa26.32■■□□□ 1.8
PTCD3-210ENST00000473829 NSD3Q9BZ95 1437 aa26.31■■□□□ 1.8
PTCD3-210ENST00000473829 ABCC6O95255 1503 aa26.31■■□□□ 1.8
PTCD3-210ENST00000473829 SEPT12Q8IYM1 358 aa26.31■■□□□ 1.8
PTCD3-210ENST00000473829 EVA1CP58658 441 aa26.3■■□□□ 1.8
PTCD3-210ENST00000473829 FYB1O15117 783 aa26.29■■□□□ 1.8
PTCD3-210ENST00000473829 UPF1Q92900 1129 aaKnown RBP eCLIP26.29■■□□□ 1.8
PTCD3-210ENST00000473829 COG3Q96JB2 828 aa26.27■■□□□ 1.8
PTCD3-210ENST00000473829 GGNBP2Q9H3C7 697 aa26.27■■□□□ 1.8
PTCD3-210ENST00000473829 USP35Q9P2H5 1018 aa26.27■■□□□ 1.8
PTCD3-210ENST00000473829 CRB1P82279 1406 aa26.26■■□□□ 1.79
PTCD3-210ENST00000473829 WNK3Q9BYP7 1800 aa26.24■■□□□ 1.79
PTCD3-210ENST00000473829 A0A0G2JS52 829 aa26.24■■□□□ 1.79
PTCD3-210ENST00000473829 FBLN1P23142 703 aa26.24■■□□□ 1.79
PTCD3-210ENST00000473829 MYT1Q01538 1121 aa26.24■■□□□ 1.79
PTCD3-210ENST00000473829 KIF7Q2M1P5 1343 aa26.23■■□□□ 1.79
PTCD3-210ENST00000473829 WDR17Q8IZU2 1322 aa26.22■■□□□ 1.79
PTCD3-210ENST00000473829 BARGINQ6ZT62 677 aa26.2■■□□□ 1.78
PTCD3-210ENST00000473829 TCP11L2Q8N4U5 519 aa26.2■■□□□ 1.78
PTCD3-210ENST00000473829 ANKRD26Q9UPS8 1709 aa26.19■■□□□ 1.78
PTCD3-210ENST00000473829 MAP3K19Q56UN5 1328 aa26.19■■□□□ 1.78
PTCD3-210ENST00000473829 KRT27Q7Z3Y8 459 aa26.19■■□□□ 1.78
PTCD3-210ENST00000473829 PARP4Q9UKK3 1724 aaKnown RBP26.19■■□□□ 1.78
PTCD3-210ENST00000473829 TOM1L2Q6ZVM7 507 aa26.18■■□□□ 1.78
PTCD3-210ENST00000473829 PANK3Q9H999 370 aa26.18■■□□□ 1.78
PTCD3-210ENST00000473829 PEAK1Q9H792 1746 aa26.17■■□□□ 1.78
PTCD3-210ENST00000473829 ERBB3P21860 1342 aa26.16■■□□□ 1.78
PTCD3-210ENST00000473829 THRAP3Q9Y2W1 955 aaKnown RBP26.16■■□□□ 1.78
PTCD3-210ENST00000473829 LRRC37A3O60309 1634 aa26.16■■□□□ 1.78
PTCD3-210ENST00000473829 CGNL1Q0VF96 1302 aa26.15■■□□□ 1.78
PTCD3-210ENST00000473829 BLMP54132 1417 aaPredicted RBP26.15■■□□□ 1.78
PTCD3-210ENST00000473829 CSB-PGBD3P0DP91 1061 aa26.15■■□□□ 1.78
PTCD3-210ENST00000473829 RRS1Q15050 365 aaKnown RBP26.14■■□□□ 1.78
PTCD3-210ENST00000473829 IP6K1Q92551 441 aa26.14■■□□□ 1.78
PTCD3-210ENST00000473829 FAM182BQ5T319 152 aa26.13■■□□□ 1.77
PTCD3-210ENST00000473829 ANKRD24Q8TF21 1146 aa26.13■■□□□ 1.77
PTCD3-210ENST00000473829 FAM208AQ9UK61 1670 aaKnown RBP26.12■■□□□ 1.77
PTCD3-210ENST00000473829 HOXC9P31274 260 aa26.12■■□□□ 1.77
PTCD3-210ENST00000473829 CARD10Q9BWT7 1032 aa26.12■■□□□ 1.77
PTCD3-210ENST00000473829 RTL1A6NKG5 1358 aa26.11■■□□□ 1.77
PTCD3-210ENST00000473829 CCDC7Q96M83 1385 aa26.11■■□□□ 1.77
PTCD3-210ENST00000473829 DISP2A7MBM2 1401 aa26.11■■□□□ 1.77
PTCD3-210ENST00000473829 RGPD2P0DJD1 1756 aa26.1■■□□□ 1.77
PTCD3-210ENST00000473829 WASHC2AQ641Q2 1341 aa26.1■■□□□ 1.77
PTCD3-210ENST00000473829 AMPHP49418 695 aa26.09■■□□□ 1.77
PTCD3-210ENST00000473829 MAP2P11137 1827 aaKnown RBP26.07■■□□□ 1.76
PTCD3-210ENST00000473829 LTV1Q96GA3 475 aaPredicted RBP26.07■■□□□ 1.76
PTCD3-210ENST00000473829 NLRP2Q9NX02 1062 aa26.06■■□□□ 1.76
PTCD3-210ENST00000473829 EMILIN1Q9Y6C2 1016 aa26.05■■□□□ 1.76
PTCD3-210ENST00000473829 TNS1Q9HBL0 1735 aaKnown RBP26.04■■□□□ 1.76
PTCD3-210ENST00000473829 NSD2O96028 1365 aa26.04■■□□□ 1.76
PTCD3-210ENST00000473829 RGPD1P0DJD0 1748 aa26.03■■□□□ 1.76
PTCD3-210ENST00000473829 FLT4P35916 1363 aa26.03■■□□□ 1.76
PTCD3-210ENST00000473829 PDE3BQ13370 1112 aa26.02■■□□□ 1.76
PTCD3-210ENST00000473829 KIF24Q5T7B8 1368 aa26.02■■□□□ 1.76
PTCD3-210ENST00000473829 INSRP06213 1382 aa26.01■■□□□ 1.75
PTCD3-210ENST00000473829 HSP90AB2PQ58FF8 381 aa26.01■■□□□ 1.75
PTCD3-210ENST00000473829 CCDC125Q86Z20 511 aa26.01■■□□□ 1.75
PTCD3-210ENST00000473829 TNNT2P45379 298 aaPredicted RBP26■■□□□ 1.75
PTCD3-210ENST00000473829 DDB1Q16531 1140 aa26■■□□□ 1.75
PTCD3-210ENST00000473829 CDCA7Q9BWT1 371 aaPredicted RBP26■■□□□ 1.75
PTCD3-210ENST00000473829 TNS2Q63HR2 1409 aa25.99■■□□□ 1.75
PTCD3-210ENST00000473829 AMER1Q5JTC6 1135 aaPredicted RBP25.99■■□□□ 1.75
PTCD3-210ENST00000473829 KNSTRNQ9Y448 316 aa25.99■■□□□ 1.75
PTCD3-210ENST00000473829 POLKQ9UBT6 870 aa25.98■■□□□ 1.75
PTCD3-210ENST00000473829 PER1O15534 1290 aaPredicted RBP25.97■■□□□ 1.75
PTCD3-210ENST00000473829 SMG6Q86US8 1419 aaKnown RBP25.97■■□□□ 1.75
PTCD3-210ENST00000473829 SBF2Q86WG5 1849 aa25.96■■□□□ 1.75
PTCD3-210ENST00000473829 FAM196AQ6ZSG2 479 aa25.96■■□□□ 1.75
PTCD3-210ENST00000473829 OVOS2A0A0G2JMS6 1433 aa25.96■■□□□ 1.75
PTCD3-210ENST00000473829 PPM1GO15355 546 aaPredicted RBP25.95■■□□□ 1.74
PTCD3-210ENST00000473829 IL2RBP14784 551 aa25.95■■□□□ 1.74
PTCD3-210ENST00000473829 DEFB132Q7Z7B7 95 aa25.95■■□□□ 1.74
PTCD3-210ENST00000473829 NBPF6Q5VWK0 638 aa25.94■■□□□ 1.74
PTCD3-210ENST00000473829 MARCH10Q8NA82 808 aaPredicted RBP25.94■■□□□ 1.74
PTCD3-210ENST00000473829 NBPF4Q96M43 638 aa25.94■■□□□ 1.74
PTCD3-210ENST00000473829 TRIM37O94972 964 aa25.93■■□□□ 1.74
PTCD3-210ENST00000473829 SHANK3Q9BYB0 1731 aa25.93■■□□□ 1.74
PTCD3-210ENST00000473829 MEGF6O75095 1541 aa25.93■■□□□ 1.74
PTCD3-210ENST00000473829 MORC1Q86VD1 984 aa25.92■■□□□ 1.74
PTCD3-210ENST00000473829 USHBP1Q8N6Y0 703 aa25.92■■□□□ 1.74
PTCD3-210ENST00000473829 EXOC5O00471 708 aa25.91■■□□□ 1.74
PTCD3-210ENST00000473829 SF3B2Q13435 895 aaKnown RBP25.91■■□□□ 1.74
PTCD3-210ENST00000473829 BCL9O00512 1426 aa25.88■■□□□ 1.73
PTCD3-210ENST00000473829 NCAPD2Q15021 1401 aa25.88■■□□□ 1.73
PTCD3-210ENST00000473829 CC2D1BQ5T0F9 858 aaKnown RBP25.87■■□□□ 1.73
PTCD3-210ENST00000473829 BAG6P46379 1132 aa25.85■■□□□ 1.73
PTCD3-210ENST00000473829 NPC1L1Q9UHC9 1359 aa25.84■■□□□ 1.73
PTCD3-210ENST00000473829 EIF4A2Q14240 407 aaKnown RBP25.84■■□□□ 1.73
PTCD3-210ENST00000473829 PTF1AQ7RTS3 328 aa25.84■■□□□ 1.73
PTCD3-210ENST00000473829 EN1Q05925 392 aaPredicted RBP25.83■■□□□ 1.73
PTCD3-210ENST00000473829 NHSQ6T4R5 1651 aa25.83■■□□□ 1.73
PTCD3-210ENST00000473829 EYA1Q99502 592 aa25.82■■□□□ 1.72
PTCD3-210ENST00000473829 CNGB1Q14028 1251 aaPredicted RBP25.81■■□□□ 1.72
PTCD3-210ENST00000473829 RREB1Q92766 1687 aa25.8■■□□□ 1.72
PTCD3-210ENST00000473829 PKD1L3Q7Z443 1732 aa25.8■■□□□ 1.72
PTCD3-210ENST00000473829 APBA3O96018 575 aa25.8■■□□□ 1.72
PTCD3-210ENST00000473829 RAPGEF4Q8WZA2 1011 aa25.79■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms