RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 NOLC1Q14978 699 aaKnown RBP eCLIP10.56□□□□□ -0.72
COL6A3-210ENST00000473258 SYNE3Q6ZMZ3 975 aa10.56□□□□□ -0.72
COL6A3-210ENST00000473258 CCDC50Q8IVM0 306 aa10.56□□□□□ -0.72
COL6A3-210ENST00000473258 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.56□□□□□ -0.72
COL6A3-210ENST00000473258 RRP7BPQ9NSQ0 103 aa10.56□□□□□ -0.72
COL6A3-210ENST00000473258 ZKSCAN5Q9Y2L8 839 aa10.56□□□□□ -0.72
COL6A3-210ENST00000473258 CEP128Q6ZU80 1094 aa10.56□□□□□ -0.72
COL6A3-210ENST00000473258 BRMS1Q9HCU9 246 aa10.56□□□□□ -0.72
COL6A3-210ENST00000473258 CASQ1P31415 396 aa10.56□□□□□ -0.72
COL6A3-210ENST00000473258 BIRC2Q13490 618 aa10.56□□□□□ -0.72
COL6A3-210ENST00000473258 NBPF11Q86T75 865 aa10.56□□□□□ -0.72
COL6A3-210ENST00000473258 MRFAP1L1Q96HT8 127 aa10.56□□□□□ -0.72
COL6A3-210ENST00000473258 HS1BP3Q53T59 392 aa10.55□□□□□ -0.72
COL6A3-210ENST00000473258 NUTM1Q86Y26 1132 aa10.55□□□□□ -0.72
COL6A3-210ENST00000473258 CEP112Q8N8E3 955 aa10.55□□□□□ -0.72
COL6A3-210ENST00000473258 SECISBP2LQ93073 1101 aaKnown RBP10.55□□□□□ -0.72
COL6A3-210ENST00000473258 CEP162Q5TB80 1403 aa10.55□□□□□ -0.72
COL6A3-210ENST00000473258 PEX19P40855 299 aa10.55□□□□□ -0.72
COL6A3-210ENST00000473258 RRAGDQ9NQL2 400 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-210ENST00000473258 CEP135Q66GS9 1140 aa10.55□□□□□ -0.72
COL6A3-210ENST00000473258 RUFY2Q8WXA3 655 aa10.55□□□□□ -0.72
COL6A3-210ENST00000473258 FAM114A2Q9NRY5 505 aa10.55□□□□□ -0.72
COL6A3-210ENST00000473258 PIP4K2AP48426 406 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-210ENST00000473258 KIF4BQ2VIQ3 1234 aa10.55□□□□□ -0.72
COL6A3-210ENST00000473258 ZNF365Q70YC5 407 aa10.55□□□□□ -0.72
COL6A3-210ENST00000473258 MICAL1Q8TDZ2 1067 aa10.55□□□□□ -0.72
COL6A3-210ENST00000473258 NBPF8Q3BBV2 869 aa10.54□□□□□ -0.72
COL6A3-210ENST00000473258 CCDC158Q5M9N0 1113 aa10.54□□□□□ -0.72
COL6A3-210ENST00000473258 ANO2Q9NQ90 1003 aa10.54□□□□□ -0.72
COL6A3-210ENST00000473258 MARCH6O60337 910 aa10.54□□□□□ -0.72
COL6A3-210ENST00000473258 GOPCQ9HD26 462 aa10.54□□□□□ -0.72
COL6A3-210ENST00000473258 CCDC171Q6TFL3 1326 aa10.54□□□□□ -0.72
COL6A3-210ENST00000473258 PFDN1O60925 122 aa10.54□□□□□ -0.72
COL6A3-210ENST00000473258 PDCP20941 246 aa10.54□□□□□ -0.72
COL6A3-210ENST00000473258 RGL3Q3MIN7 710 aa10.54□□□□□ -0.72
COL6A3-210ENST00000473258 CEP57L1Q8IYX8 460 aa10.54□□□□□ -0.72
COL6A3-210ENST00000473258 ATRIPQ8WXE1 791 aa10.53□□□□□ -0.72
COL6A3-210ENST00000473258 VEZTQ9HBM0 779 aa10.53□□□□□ -0.72
COL6A3-210ENST00000473258 KIF5CO60282 957 aa10.53□□□□□ -0.72
COL6A3-210ENST00000473258 ANAPC15P60006 121 aa10.53□□□□□ -0.72
COL6A3-210ENST00000473258 KLHL10Q6JEL2 608 aa10.53□□□□□ -0.72
COL6A3-210ENST00000473258 WASHC2CQ9Y4E1 1318 aa10.53□□□□□ -0.72
COL6A3-210ENST00000473258 K7ELQ4 463 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-210ENST00000473258 INPP5BP32019 993 aa10.53□□□□□ -0.72
COL6A3-210ENST00000473258 CCDC27Q2M243 656 aa10.53□□□□□ -0.72
COL6A3-210ENST00000473258 LRRC23Q53EV4 343 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-210ENST00000473258 ZKSCAN2Q63HK3 967 aa10.53□□□□□ -0.72
COL6A3-210ENST00000473258 CEP120Q8N960 986 aa10.53□□□□□ -0.72
COL6A3-210ENST00000473258 PPFIBP2Q8ND30 876 aa10.53□□□□□ -0.72
COL6A3-210ENST00000473258 DDX27Q96GQ7 796 aaKnown RBP10.53□□□□□ -0.72
COL6A3-210ENST00000473258 VCXQ9H320 206 aa10.53□□□□□ -0.72
COL6A3-210ENST00000473258 PCK1P35558 622 aa10.53□□□□□ -0.72
COL6A3-210ENST00000473258 DIXDC1Q155Q3 683 aa10.53□□□□□ -0.72
COL6A3-210ENST00000473258 CCDC113Q9H0I3 377 aa10.53□□□□□ -0.72
COL6A3-210ENST00000473258 USP25Q9UHP3 1055 aa10.53□□□□□ -0.72
COL6A3-210ENST00000473258 WDR33Q9C0J8 1336 aaKnown RBP10.53□□□□□ -0.72
COL6A3-210ENST00000473258 CPLX1O14810 134 aa10.52□□□□□ -0.72
COL6A3-210ENST00000473258 EPB41L2O43491 1005 aaKnown RBP10.52□□□□□ -0.72
COL6A3-210ENST00000473258 STAMBPO95630 424 aa10.52□□□□□ -0.72
COL6A3-210ENST00000473258 BRPF1P55201 1214 aaPredicted RBP10.52□□□□□ -0.73
COL6A3-210ENST00000473258 IFFO1Q0D2I5 559 aa10.52□□□□□ -0.73
COL6A3-210ENST00000473258 MCM6Q14566 821 aa10.52□□□□□ -0.73
COL6A3-210ENST00000473258 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.52□□□□□ -0.73
COL6A3-210ENST00000473258 CDC45O75419 566 aa10.52□□□□□ -0.73
COL6A3-210ENST00000473258 SPECC1Q5M775 1068 aa10.52□□□□□ -0.73
COL6A3-210ENST00000473258 IRAK4Q9NWZ3 460 aa10.52□□□□□ -0.73
COL6A3-210ENST00000473258 WASHC2AQ641Q2 1341 aa10.52□□□□□ -0.73
COL6A3-210ENST00000473258 GCOM1H8Y6P7 765 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-210ENST00000473258 CEP104O60308 925 aa10.51□□□□□ -0.73
COL6A3-210ENST00000473258 MYZAPP0CAP1 466 aa10.51□□□□□ -0.73
COL6A3-210ENST00000473258 SNW1Q13573 536 aaKnown RBP10.51□□□□□ -0.73
COL6A3-210ENST00000473258 PANK2Q9BZ23 570 aa10.51□□□□□ -0.73
COL6A3-210ENST00000473258 NUP62CLQ9H1M0 184 aa10.51□□□□□ -0.73
COL6A3-210ENST00000473258 TRMT1Q9NXH9 659 aaKnown RBP10.51□□□□□ -0.73
COL6A3-210ENST00000473258 EIF3AQ14152 1382 aaKnown RBP10.51□□□□□ -0.73
COL6A3-210ENST00000473258 NINLQ9Y2I6 1382 aa10.51□□□□□ -0.73
COL6A3-210ENST00000473258 NOL3O60936 208 aaKnown RBP10.51□□□□□ -0.73
COL6A3-210ENST00000473258 MORC1Q86VD1 984 aa10.51□□□□□ -0.73
COL6A3-210ENST00000473258 VPS18Q9P253 973 aa10.51□□□□□ -0.73
COL6A3-210ENST00000473258 KIF1CO43896 1103 aaKnown RBP10.51□□□□□ -0.73
COL6A3-210ENST00000473258 SLU7O95391 586 aaKnown RBP10.51□□□□□ -0.73
COL6A3-210ENST00000473258 MRFAP1Q9Y605 127 aa10.51□□□□□ -0.73
COL6A3-210ENST00000473258 BUB1BO60566 1050 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-210ENST00000473258 B4GALNT4Q76KP1 1039 aa10.51□□□□□ -0.73
COL6A3-210ENST00000473258 PPP1R12CQ9BZL4 782 aa10.51□□□□□ -0.73
COL6A3-210ENST00000473258 DDX19BQ9UMR2 479 aa10.51□□□□□ -0.73
COL6A3-210ENST00000473258 PDE1CQ14123 709 aaPredicted RBP10.5□□□□□ -0.73
COL6A3-210ENST00000473258 ANKS4BQ8N8V4 417 aa10.5□□□□□ -0.73
COL6A3-210ENST00000473258 UPF3BQ9BZI7 483 aaKnown RBP10.5□□□□□ -0.73
COL6A3-210ENST00000473258 LACTBP83111 547 aaPredicted RBP10.5□□□□□ -0.73
COL6A3-210ENST00000473258 ZFYVE27Q5T4F4 411 aa10.5□□□□□ -0.73
COL6A3-210ENST00000473258 TACC1O75410 805 aa10.5□□□□□ -0.73
COL6A3-210ENST00000473258 GBP7Q8N8V2 638 aaPredicted RBP10.5□□□□□ -0.73
COL6A3-210ENST00000473258 CLIP2Q9UDT6 1046 aa10.5□□□□□ -0.73
COL6A3-210ENST00000473258 UVSSAQ2YD98 709 aa10.49□□□□□ -0.73
COL6A3-210ENST00000473258 CCDC92Q53HC0 331 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-210ENST00000473258 DNAI2Q9GZS0 605 aa10.49□□□□□ -0.73
COL6A3-210ENST00000473258 STIM2Q9P246 746 aa10.49□□□□□ -0.73
COL6A3-210ENST00000473258 RABGAP1Q9Y3P9 1069 aa10.49□□□□□ -0.73
COL6A3-210ENST00000473258 SSBP05455 408 aaKnown RBP eCLIP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms