RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 ARHGEF28Q8N1W1 1705 aaKnown RBP13.64□□□□□ -0.23
VCL-204ENST00000472585 CASZ1Q86V15 1759 aa13.64□□□□□ -0.23
VCL-204ENST00000472585 ZBTB7AO95365 584 aa13.64□□□□□ -0.23
VCL-204ENST00000472585 SBF2Q86WG5 1849 aa13.64□□□□□ -0.23
VCL-204ENST00000472585 PARP4Q9UKK3 1724 aaKnown RBP13.64□□□□□ -0.23
VCL-204ENST00000472585 MYOM1P52179 1685 aa13.63□□□□□ -0.23
VCL-204ENST00000472585 CABP2Q9NPB3 220 aa13.63□□□□□ -0.23
VCL-204ENST00000472585 ATF5Q9Y2D1 282 aaPredicted RBP13.63□□□□□ -0.23
VCL-204ENST00000472585 OVOS2A0A0G2JMS6 1433 aa13.63□□□□□ -0.23
VCL-204ENST00000472585 OVOS2A0A0J9YW53 1432 aa13.63□□□□□ -0.23
VCL-204ENST00000472585 OVOS2Q6IE36 1432 aa13.63□□□□□ -0.23
VCL-204ENST00000472585 PROM2Q8N271 834 aa13.62□□□□□ -0.23
VCL-204ENST00000472585 ANO8Q9HCE9 1232 aaPredicted RBP13.62□□□□□ -0.23
VCL-204ENST00000472585 LMO7Q8WWI1 1683 aa13.62□□□□□ -0.23
VCL-204ENST00000472585 SYT17Q9BSW7 474 aa13.61□□□□□ -0.23
VCL-204ENST00000472585 FHDC1Q9C0D6 1143 aaPredicted RBP13.61□□□□□ -0.23
VCL-204ENST00000472585 PDGFDQ9GZP0 370 aaPredicted RBP13.61□□□□□ -0.23
VCL-204ENST00000472585 ZNF219Q9P2Y4 722 aaPredicted RBP13.61□□□□□ -0.23
VCL-204ENST00000472585 AXIN2Q9Y2T1 843 aa13.61□□□□□ -0.23
VCL-204ENST00000472585 UTRNP46939 3433 aa13.61□□□□□ -0.23
VCL-204ENST00000472585 TOPAZ1Q8N9V7 1692 aa13.6□□□□□ -0.23
VCL-204ENST00000472585 NLRP13Q86W25 1043 aa13.6□□□□□ -0.23
VCL-204ENST00000472585 STK32BQ9NY57 414 aa13.6□□□□□ -0.23
VCL-204ENST00000472585 CABP1Q9NZU7 370 aa13.6□□□□□ -0.23
VCL-204ENST00000472585 COL5A2P05997 1499 aaPredicted RBP13.6□□□□□ -0.23
VCL-204ENST00000472585 PTGER2P43116 358 aa13.59□□□□□ -0.23
VCL-204ENST00000472585 DDB1Q16531 1140 aa13.59□□□□□ -0.23
VCL-204ENST00000472585 PEAK1Q9H792 1746 aa13.59□□□□□ -0.23
VCL-204ENST00000472585 PPIP5K1Q6PFW1 1433 aa13.58□□□□□ -0.24
VCL-204ENST00000472585 ZBTB7CA1YPR0 619 aa13.58□□□□□ -0.24
VCL-204ENST00000472585 SRPK2P78362 688 aaKnown RBP13.58□□□□□ -0.24
VCL-204ENST00000472585 CRB1P82279 1406 aa13.57□□□□□ -0.24
VCL-204ENST00000472585 NLRP6P59044 892 aa13.57□□□□□ -0.24
VCL-204ENST00000472585 MARCH10Q8NA82 808 aaPredicted RBP13.57□□□□□ -0.24
VCL-204ENST00000472585 AKAP12Q02952 1782 aa13.56□□□□□ -0.24
VCL-204ENST00000472585 GIGYF1O75420 1035 aaPredicted RBP13.56□□□□□ -0.24
VCL-204ENST00000472585 MTFR1LQ9H019 292 aa13.56□□□□□ -0.24
VCL-204ENST00000472585 CENPJQ9HC77 1338 aaPredicted RBP13.56□□□□□ -0.24
VCL-204ENST00000472585 AATKQ6ZMQ8 1374 aa13.56□□□□□ -0.24
VCL-204ENST00000472585 LRRC37A3O60309 1634 aa13.55□□□□□ -0.24
VCL-204ENST00000472585 SLC15A2Q16348 729 aa13.55□□□□□ -0.24
VCL-204ENST00000472585 GPR162Q16538 588 aa13.55□□□□□ -0.24
VCL-204ENST00000472585 TOM1L2Q6ZVM7 507 aa13.55□□□□□ -0.24
VCL-204ENST00000472585 USP6P35125 1406 aa13.55□□□□□ -0.24
VCL-204ENST00000472585 TXNRD1Q16881 649 aa13.54□□□□□ -0.24
VCL-204ENST00000472585 ARXQ96QS3 562 aa13.54□□□□□ -0.24
VCL-204ENST00000472585 ARHGEF25Q86VW2 580 aa13.53□□□□□ -0.24
VCL-204ENST00000472585 CEP350Q5VT06 3117 aa13.52□□□□□ -0.24
VCL-204ENST00000472585 CDCA7Q9BWT1 371 aaPredicted RBP13.52□□□□□ -0.25
VCL-204ENST00000472585 SLIT3O75094 1523 aa13.52□□□□□ -0.25
VCL-204ENST00000472585 COL18A1P39060 1754 aa13.52□□□□□ -0.25
VCL-204ENST00000472585 KAT6BQ8WYB5 2073 aa13.51□□□□□ -0.25
VCL-204ENST00000472585 WNK3Q9BYP7 1800 aa13.51□□□□□ -0.25
VCL-204ENST00000472585 BRD4O60885 1362 aaPredicted RBP13.51□□□□□ -0.25
VCL-204ENST00000472585 WDR17Q8IZU2 1322 aa13.51□□□□□ -0.25
VCL-204ENST00000472585 L3MBTL2Q969R5 705 aa13.51□□□□□ -0.25
VCL-204ENST00000472585 KIAA1210Q9ULL0 1709 aa13.5□□□□□ -0.25
VCL-204ENST00000472585 TTC21BQ7Z4L5 1316 aa13.5□□□□□ -0.25
VCL-204ENST00000472585 PELP1Q8IZL8 1130 aaKnown RBP13.5□□□□□ -0.25
VCL-204ENST00000472585 ATXN8OSP0DMR3 200 aa13.49□□□□□ -0.25
VCL-204ENST00000472585 KLHL34Q8N239 644 aa13.49□□□□□ -0.25
VCL-204ENST00000472585 SGIP1Q9BQI5 828 aa13.49□□□□□ -0.25
VCL-204ENST00000472585 BCL9O00512 1426 aa13.48□□□□□ -0.25
VCL-204ENST00000472585 EXOC5O00471 708 aa13.48□□□□□ -0.25
VCL-204ENST00000472585 SOX12O15370 315 aa13.48□□□□□ -0.25
VCL-204ENST00000472585 CARD10Q9BWT7 1032 aa13.48□□□□□ -0.25
VCL-204ENST00000472585 MAP3K5Q99683 1374 aa13.47□□□□□ -0.25
VCL-204ENST00000472585 PIK3C2AO00443 1686 aa13.47□□□□□ -0.25
VCL-204ENST00000472585 CSB-PGBD3P0DP91 1061 aa13.47□□□□□ -0.25
VCL-204ENST00000472585 DSG3P32926 999 aa13.47□□□□□ -0.25
VCL-204ENST00000472585 SIN3AQ96ST3 1273 aa13.47□□□□□ -0.25
VCL-204ENST00000472585 CPSF1Q10570 1443 aaKnown RBP13.47□□□□□ -0.25
VCL-204ENST00000472585 POLD1P28340 1107 aa13.45□□□□□ -0.26
VCL-204ENST00000472585 ZNF692Q9BU19 519 aaPredicted RBP13.45□□□□□ -0.26
VCL-204ENST00000472585 RGPD5Q99666 1765 aa13.45□□□□□ -0.26
VCL-204ENST00000472585 EVC2Q86UK5 1308 aa13.44□□□□□ -0.26
VCL-204ENST00000472585 ACSBG1Q96GR2 724 aa13.44□□□□□ -0.26
VCL-204ENST00000472585 ABCB7O75027 752 aa13.43□□□□□ -0.26
VCL-204ENST00000472585 KCNH5Q8NCM2 988 aa13.43□□□□□ -0.26
VCL-204ENST00000472585 QRICH2Q9H0J4 1663 aa13.43□□□□□ -0.26
VCL-204ENST00000472585 LRRC4BQ9NT99 713 aa13.42□□□□□ -0.26
VCL-204ENST00000472585 NHSQ6T4R5 1651 aa13.42□□□□□ -0.26
VCL-204ENST00000472585 GOLGB1Q14789 3259 aaKnown RBP13.42□□□□□ -0.26
VCL-204ENST00000472585 NFAT5O94916 1531 aa13.42□□□□□ -0.26
VCL-204ENST00000472585 NME9Q86XW9 330 aa13.41□□□□□ -0.26
VCL-204ENST00000472585 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.41□□□□□ -0.26
VCL-204ENST00000472585 SLC16A10Q8TF71 515 aa13.41□□□□□ -0.26
VCL-204ENST00000472585 SHANK3Q9BYB0 1731 aa13.41□□□□□ -0.26
VCL-204ENST00000472585 TTC21AQ8NDW8 1320 aa13.4□□□□□ -0.26
VCL-204ENST00000472585 GRIN3BO60391 1043 aa13.4□□□□□ -0.26
VCL-204ENST00000472585 ZNF827Q17R98 1081 aa13.4□□□□□ -0.26
VCL-204ENST00000472585 CCDC7Q96M83 1385 aa13.4□□□□□ -0.26
VCL-204ENST00000472585 PAPPAQ13219 1627 aa13.39□□□□□ -0.27
VCL-204ENST00000472585 BTAF1O14981 1849 aa13.39□□□□□ -0.27
VCL-204ENST00000472585 USP31Q70CQ4 1352 aa13.39□□□□□ -0.27
VCL-204ENST00000472585 KTN1Q86UP2 1357 aaKnown RBP13.39□□□□□ -0.27
VCL-204ENST00000472585 CD163L1Q9NR16 1453 aa13.39□□□□□ -0.27
VCL-204ENST00000472585 TNS2Q63HR2 1409 aa13.39□□□□□ -0.27
VCL-204ENST00000472585 ERBB3P21860 1342 aa13.39□□□□□ -0.27
VCL-204ENST00000472585 SBNO2Q9Y2G9 1366 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms