RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 LCE2AQ5TA79 106 aaPredicted RBP8.33□□□□□ -1.08
PRPF40A-207ENST00000471701 CCDC116Q8IYX3 515 aa8.33□□□□□ -1.08
PRPF40A-207ENST00000471701 GPSM3Q9Y4H4 160 aa8.33□□□□□ -1.08
PRPF40A-207ENST00000471701 USP17L8P0C7I0 530 aa8.32□□□□□ -1.08
PRPF40A-207ENST00000471701 C6orf118Q5T5N4 469 aa8.32□□□□□ -1.08
PRPF40A-207ENST00000471701 SLC10A4Q96EP9 437 aa8.32□□□□□ -1.08
PRPF40A-207ENST00000471701 BMP2P12643 396 aa8.31□□□□□ -1.08
PRPF40A-207ENST00000471701 KCTD15Q96SI1 283 aaPredicted RBP8.31□□□□□ -1.08
PRPF40A-207ENST00000471701 PGPEP1Q9NXJ5 209 aa8.31□□□□□ -1.08
PRPF40A-207ENST00000471701 DHX9Q08211 1270 aaKnown RBP8.3□□□□□ -1.08
PRPF40A-207ENST00000471701 NPAS3Q8IXF0 933 aa8.3□□□□□ -1.08
PRPF40A-207ENST00000471701 EPS8L1Q8TE68 723 aa8.3□□□□□ -1.08
PRPF40A-207ENST00000471701 MAN1A2O60476 641 aa8.29□□□□□ -1.08
PRPF40A-207ENST00000471701 ADAM32Q8TC27 787 aa8.29□□□□□ -1.08
PRPF40A-207ENST00000471701 TSEN34Q9BSV6 310 aaKnown RBP8.29□□□□□ -1.08
PRPF40A-207ENST00000471701 BRPF1P55201 1214 aaPredicted RBP8.28□□□□□ -1.08
PRPF40A-207ENST00000471701 INSM1Q01101 510 aaPredicted RBP8.28□□□□□ -1.08
PRPF40A-207ENST00000471701 TPRNQ4KMQ1 711 aa8.28□□□□□ -1.08
PRPF40A-207ENST00000471701 PPP1R26Q5T8A7 1209 aaPredicted RBP8.28□□□□□ -1.08
PRPF40A-207ENST00000471701 DZIP3Q86Y13 1208 aaKnown RBP8.28□□□□□ -1.08
PRPF40A-207ENST00000471701 LINC00528Q8N1L1 170 aa8.28□□□□□ -1.08
PRPF40A-207ENST00000471701 HMX1Q9NP08 348 aaPredicted RBP8.28□□□□□ -1.08
PRPF40A-207ENST00000471701 MEIOBQ8N635 442 aa8.27□□□□□ -1.09
PRPF40A-207ENST00000471701 IRF7Q92985 503 aa8.27□□□□□ -1.09
PRPF40A-207ENST00000471701 WIPF1O43516 503 aa8.26□□□□□ -1.09
PRPF40A-207ENST00000471701 NBPF20Q3BBV1 942 aa8.26□□□□□ -1.09
PRPF40A-207ENST00000471701 SOBPA7XYQ1 873 aa8.25□□□□□ -1.09
PRPF40A-207ENST00000471701 VEGFBP49765 207 aa8.25□□□□□ -1.09
PRPF40A-207ENST00000471701 TRIM52Q96A61 297 aa8.24□□□□□ -1.09
PRPF40A-207ENST00000471701 OCSTAMPQ9BR26 566 aa8.24□□□□□ -1.09
PRPF40A-207ENST00000471701 RAB15P59190 212 aa8.23□□□□□ -1.09
PRPF40A-207ENST00000471701 CBLBQ13191 982 aa8.23□□□□□ -1.09
PRPF40A-207ENST00000471701 INTS6LQ5JSJ4 861 aaKnown RBP8.23□□□□□ -1.09
PRPF40A-207ENST00000471701 H3BM21 787 aa8.22□□□□□ -1.09
PRPF40A-207ENST00000471701 Q6ZVU0 165 aa8.22□□□□□ -1.09
PRPF40A-207ENST00000471701 TRIM34Q9BYJ4 488 aa8.22□□□□□ -1.09
PRPF40A-207ENST00000471701 SOS2Q07890 1332 aaPredicted RBP8.22□□□□□ -1.09
PRPF40A-207ENST00000471701 TTLL8A6PVC2 850 aa8.21□□□□□ -1.1
PRPF40A-207ENST00000471701 BANK1Q8NDB2 785 aa8.21□□□□□ -1.1
PRPF40A-207ENST00000471701 ZBBXA8MT70 800 aa8.2□□□□□ -1.1
PRPF40A-207ENST00000471701 GMPRP36959 345 aa8.2□□□□□ -1.1
PRPF40A-207ENST00000471701 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.2□□□□□ -1.17e-7■□□□□ 8.4
PRPF40A-207ENST00000471701 FIGNL2A6NMB9 653 aa8.19□□□□□ -1.1
PRPF40A-207ENST00000471701 LCE2CQ5TA81 110 aa8.19□□□□□ -1.1
PRPF40A-207ENST00000471701 TMPRSS4Q9NRS4 437 aa8.19□□□□□ -1.1
PRPF40A-207ENST00000471701 STK17AQ9UEE5 414 aa8.19□□□□□ -1.1
PRPF40A-207ENST00000471701 PCDHB9Q9Y5E1 797 aa8.19□□□□□ -1.1
PRPF40A-207ENST00000471701 ERVH48-1M5A8F1 160 aa8.18□□□□□ -1.1
PRPF40A-207ENST00000471701 APBB1O00213 710 aa8.18□□□□□ -1.1
PRPF40A-207ENST00000471701 SPINT1O43278 529 aa8.18□□□□□ -1.1
PRPF40A-207ENST00000471701 RELBQ01201 579 aa8.18□□□□□ -1.1
PRPF40A-207ENST00000471701 SEPT12Q8IYM1 358 aa8.18□□□□□ -1.1
PRPF40A-207ENST00000471701 DNMT3LQ9UJW3 386 aa8.18□□□□□ -1.1
PRPF40A-207ENST00000471701 ZNF330Q9Y3S2 320 aaPredicted RBP8.18□□□□□ -1.1
PRPF40A-207ENST00000471701 FAM181BA6NEQ2 426 aa8.17□□□□□ -1.1
PRPF40A-207ENST00000471701 PPFIA3O75145 1194 aa8.17□□□□□ -1.1
PRPF40A-207ENST00000471701 MCCD1P59942 119 aaPredicted RBP8.17□□□□□ -1.1
PRPF40A-207ENST00000471701 GJD4Q96KN9 370 aaPredicted RBP8.17□□□□□ -1.1
PRPF40A-207ENST00000471701 AGBL1Q96MI9 1066 aa8.17□□□□□ -1.1
PRPF40A-207ENST00000471701 ESPNB1AK53 854 aa8.16□□□□□ -1.1
PRPF40A-207ENST00000471701 CCDC125Q86Z20 511 aa8.16□□□□□ -1.1
PRPF40A-207ENST00000471701 ZNF784Q8NCA9 323 aaPredicted RBP8.16□□□□□ -1.1
PRPF40A-207ENST00000471701 ZNF592Q92610 1267 aa8.16□□□□□ -1.1
PRPF40A-207ENST00000471701 ZNF395Q9H8N7 513 aaPredicted RBP8.16□□□□□ -1.1
PRPF40A-207ENST00000471701 POLMQ9NP87 494 aaPredicted RBP8.16□□□□□ -1.1
PRPF40A-207ENST00000471701 ERBB4Q15303 1308 aa8.15□□□□□ -1.1
PRPF40A-207ENST00000471701 FBXO45P0C2W1 286 aa8.15□□□□□ -1.1
PRPF40A-207ENST00000471701 RNF20Q5VTR2 975 aa8.15□□□□□ -1.1
PRPF40A-207ENST00000471701 GIGYF1O75420 1035 aaPredicted RBP8.14□□□□□ -1.11
PRPF40A-207ENST00000471701 PTSQ03393 145 aa8.14□□□□□ -1.11
PRPF40A-207ENST00000471701 INSM2Q96T92 566 aaPredicted RBP8.14□□□□□ -1.11
PRPF40A-207ENST00000471701 PRM3Q9NNZ6 103 aa8.14□□□□□ -1.11
PRPF40A-207ENST00000471701 NDUFB9Q9Y6M9 179 aa8.14□□□□□ -1.11
PRPF40A-207ENST00000471701 ADH1AP07327 375 aa8.13□□□□□ -1.11
PRPF40A-207ENST00000471701 ADD1P35611 737 aaKnown RBP8.13□□□□□ -1.11
PRPF40A-207ENST00000471701 PTGIRP43119 386 aa8.13□□□□□ -1.11
PRPF40A-207ENST00000471701 NR1H3Q13133 447 aa8.13□□□□□ -1.11
PRPF40A-207ENST00000471701 ZSCAN1Q8NBB4 408 aa8.13□□□□□ -1.11
PRPF40A-207ENST00000471701 ESF1Q9H501 851 aaKnown RBP8.13□□□□□ -1.11
PRPF40A-207ENST00000471701 SOCS7O14512 581 aa8.12□□□□□ -1.11
PRPF40A-207ENST00000471701 LILRA1O75019 489 aa8.12□□□□□ -1.11
PRPF40A-207ENST00000471701 CTSOP43234 321 aaPredicted RBP8.12□□□□□ -1.11
PRPF40A-207ENST00000471701 CYLDQ9NQC7 956 aa8.12□□□□□ -1.11
PRPF40A-207ENST00000471701 SNRKQ9NRH2 765 aa8.12□□□□□ -1.11
PRPF40A-207ENST00000471701 VSIG8P0DPA2 414 aa8.11□□□□□ -1.11
PRPF40A-207ENST00000471701 CCDC155Q8N6L0 562 aa8.1□□□□□ -1.11
PRPF40A-207ENST00000471701 MTMR14Q8NCE2 650 aa8.1□□□□□ -1.11
PRPF40A-207ENST00000471701 SLC35F4A4IF30 521 aa8.08□□□□□ -1.12
PRPF40A-207ENST00000471701 ATP5J2-PTCD1G3V325 749 aa8.08□□□□□ -1.12
PRPF40A-207ENST00000471701 CC2D2BQ6DHV5 1058 aa8.07□□□□□ -1.12
PRPF40A-207ENST00000471701 LYSMD3Q7Z3D4 306 aa8.07□□□□□ -1.12
PRPF40A-207ENST00000471701 RNF217Q8TC41 542 aa8.07□□□□□ -1.12
PRPF40A-207ENST00000471701 PCDHB11Q9Y5F2 797 aa8.06□□□□□ -1.12
PRPF40A-207ENST00000471701 MEN1O00255 615 aa8.05□□□□□ -1.12
PRPF40A-207ENST00000471701 RNF144AP50876 292 aaPredicted RBP8.05□□□□□ -1.12
PRPF40A-207ENST00000471701 SV2AQ7L0J3 742 aa8.05□□□□□ -1.12
PRPF40A-207ENST00000471701 PRICKLE2Q7Z3G6 844 aa8.05□□□□□ -1.12
PRPF40A-207ENST00000471701 VWA5B2Q8N398 1253 aa8.05□□□□□ -1.12
PRPF40A-207ENST00000471701 KDF1Q8NAX2 398 aaPredicted RBP8.05□□□□□ -1.12
PRPF40A-207ENST00000471701 NANOS1Q8WY41 292 aaKnown RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms