RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 AEBP2Q6ZN18 517 aaPredicted RBP23.31■■□□□ 1.32
PRPF40A-207ENST00000471701 CHIC1Q5VXU3 224 aa22.43■■□□□ 1.18
PRPF40A-207ENST00000471701 SENP3Q9H4L4 574 aaPredicted RBP19.93■□□□□ 0.78
PRPF40A-207ENST00000471701 PHF23Q9BUL5 403 aaPredicted RBP19.72■□□□□ 0.75
PRPF40A-207ENST00000471701 FOXD1Q16676 465 aa18.5■□□□□ 0.55
PRPF40A-207ENST00000471701 PLPPR3Q6T4P5 718 aa18.09■□□□□ 0.49
PRPF40A-207ENST00000471701 PPP6R1Q9UPN7 881 aa17.48■□□□□ 0.39
PRPF40A-207ENST00000471701 ADRA2BP18089 450 aa17.47■□□□□ 0.39
PRPF40A-207ENST00000471701 PIAS4Q8N2W9 510 aaPredicted RBP17.39■□□□□ 0.37
PRPF40A-207ENST00000471701 MSH5O43196 834 aa17.29■□□□□ 0.36
PRPF40A-207ENST00000471701 POTEDQ86YR6 584 aa16.39■□□□□ 0.21
PRPF40A-207ENST00000471701 SCAF1Q9H7N4 1312 aaKnown RBP16.1■□□□□ 0.17
PRPF40A-207ENST00000471701 MAPK8IP2Q13387 824 aaPredicted RBP15.97■□□□□ 0.15
PRPF40A-207ENST00000471701 PPP4R3CPQ6ZMV5 832 aa15.88■□□□□ 0.13
PRPF40A-207ENST00000471701 DMRT2Q9Y5R5 561 aa15.81■□□□□ 0.12
PRPF40A-207ENST00000471701 CNKSR2Q8WXI2 1034 aa15.53■□□□□ 0.08
PRPF40A-207ENST00000471701 NCBP3Q53F19 620 aaKnown RBP15.41■□□□□ 0.06
PRPF40A-207ENST00000471701 HOXD11P31277 338 aaPredicted RBP15.32■□□□□ 0.04
PRPF40A-207ENST00000471701 RNF216Q9NWF9 866 aaPredicted RBP15.31■□□□□ 0.04
PRPF40A-207ENST00000471701 DCAF8L1A6NGE4 600 aa15.26■□□□□ 0.03
PRPF40A-207ENST00000471701 NPM3O75607 178 aaKnown RBP15.08■□□□□ 0
PRPF40A-207ENST00000471701 KCNA4P22459 653 aa15□□□□□ -0.01
PRPF40A-207ENST00000471701 DNAJC5BQ9UF47 199 aa14.77□□□□□ -0.05
PRPF40A-207ENST00000471701 RNF39Q9H2S5 420 aa14.72□□□□□ -0.05
PRPF40A-207ENST00000471701 CACNB1Q02641 598 aaPredicted RBP14.71□□□□□ -0.05
PRPF40A-207ENST00000471701 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.7□□□□□ -0.062e-6■■□□□ 14.2
PRPF40A-207ENST00000471701 C1QBPQ07021 282 aaKnown RBP14.57□□□□□ -0.08
PRPF40A-207ENST00000471701 SLC4A2P04920 1241 aa14.31□□□□□ -0.12
PRPF40A-207ENST00000471701 U3KPZ7 1027 aaPredicted RBP14.31□□□□□ -0.12
PRPF40A-207ENST00000471701 SLC4A1APQ9BWU0 796 aaKnown RBP14.27□□□□□ -0.13
PRPF40A-207ENST00000471701 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.11□□□□□ -0.15
PRPF40A-207ENST00000471701 HNRNPUL2Q1KMD3 747 aaKnown RBP14.11□□□□□ -0.15
PRPF40A-207ENST00000471701 CAPN15O75808 1086 aa14.08□□□□□ -0.16
PRPF40A-207ENST00000471701 APLP2Q06481 763 aa14.08□□□□□ -0.16
PRPF40A-207ENST00000471701 SPINK5Q9NQ38 1064 aaPredicted RBP14.04□□□□□ -0.16
PRPF40A-207ENST00000471701 SAMD1Q6SPF0 538 aaPredicted RBP14.01□□□□□ -0.17
PRPF40A-207ENST00000471701 MYCNP04198 464 aaPredicted RBP13.98□□□□□ -0.17
PRPF40A-207ENST00000471701 FOXD4L1Q9NU39 408 aa13.96□□□□□ -0.17
PRPF40A-207ENST00000471701 TRHP20396 242 aaPredicted RBP13.92□□□□□ -0.18
PRPF40A-207ENST00000471701 ZNF219Q9P2Y4 722 aaPredicted RBP13.89□□□□□ -0.19
PRPF40A-207ENST00000471701 DSG3P32926 999 aa13.88□□□□□ -0.19
PRPF40A-207ENST00000471701 ZBTB22O15209 634 aa13.74□□□□□ -0.21
PRPF40A-207ENST00000471701 ABCB7O75027 752 aa13.73□□□□□ -0.21
PRPF40A-207ENST00000471701 POLA2Q14181 598 aa13.59□□□□□ -0.23
PRPF40A-207ENST00000471701 ATF5Q9Y2D1 282 aaPredicted RBP13.58□□□□□ -0.24
PRPF40A-207ENST00000471701 ATXN8OSP0DMR3 200 aa13.54□□□□□ -0.24
PRPF40A-207ENST00000471701 CSRNP3Q8WYN3 585 aa13.39□□□□□ -0.27
PRPF40A-207ENST00000471701 EHMT2Q96KQ7 1210 aa13.39□□□□□ -0.27
PRPF40A-207ENST00000471701 ZBTB12Q9Y330 459 aaPredicted RBP13.35□□□□□ -0.27
PRPF40A-207ENST00000471701 RBM42Q9BTD8 480 aaKnown RBP13.3□□□□□ -0.28
PRPF40A-207ENST00000471701 FBLN2P98095 1184 aa13.15□□□□□ -0.3
PRPF40A-207ENST00000471701 OSCARQ8IYS5 282 aa13.08□□□□□ -0.32
PRPF40A-207ENST00000471701 AKT1S1Q96B36 256 aa13.03□□□□□ -0.32
PRPF40A-207ENST00000471701 MKRN4PQ13434 485 aaPredicted RBP12.95□□□□□ -0.34
PRPF40A-207ENST00000471701 SPDYE2BA6NHP3 402 aa12.93□□□□□ -0.34
PRPF40A-207ENST00000471701 SPDYE6P0CI01 402 aa12.93□□□□□ -0.34
PRPF40A-207ENST00000471701 SPDYE2Q495Y8 402 aa12.93□□□□□ -0.34
PRPF40A-207ENST00000471701 POTEHQ6S545 545 aa12.92□□□□□ -0.34
PRPF40A-207ENST00000471701 REM2Q8IYK8 340 aaPredicted RBP12.89□□□□□ -0.35
PRPF40A-207ENST00000471701 CHRDL2Q6WN34 429 aa12.87□□□□□ -0.35
PRPF40A-207ENST00000471701 ZNF692Q9BU19 519 aaPredicted RBP12.86□□□□□ -0.35
PRPF40A-207ENST00000471701 SSUH2Q9Y2M2 353 aa12.73□□□□□ -0.37
PRPF40A-207ENST00000471701 PITPNM1O00562 1244 aa12.71□□□□□ -0.37
PRPF40A-207ENST00000471701 SPDYE1Q8NFV5 336 aaPredicted RBP12.67□□□□□ -0.38
PRPF40A-207ENST00000471701 CLEC11AQ9Y240 323 aa12.66□□□□□ -0.38
PRPF40A-207ENST00000471701 PABPN1Q86U42 306 aaKnown RBP eCLIP12.65□□□□□ -0.382e-6■□□□□ 9.6
PRPF40A-207ENST00000471701 PIP4P2Q8N4L2 257 aa12.6□□□□□ -0.39
PRPF40A-207ENST00000471701 FXR2P51116 673 aaKnown RBP eCLIP12.57□□□□□ -0.4
PRPF40A-207ENST00000471701 SPDYE4A6NLX3 237 aa12.56□□□□□ -0.4
PRPF40A-207ENST00000471701 PRR29P0C7W0 189 aa12.5□□□□□ -0.41
PRPF40A-207ENST00000471701 PRKAR2AP13861 404 aaKnown RBP12.43□□□□□ -0.42
PRPF40A-207ENST00000471701 STAG3Q9UJ98 1225 aa12.41□□□□□ -0.42
PRPF40A-207ENST00000471701 HAX1O00165 279 aa12.39□□□□□ -0.43
PRPF40A-207ENST00000471701 CHADLQ6NUI6 762 aa12.33□□□□□ -0.44
PRPF40A-207ENST00000471701 SP7Q8TDD2 431 aaPredicted RBP12.23□□□□□ -0.45
PRPF40A-207ENST00000471701 PROM2Q8N271 834 aa12.19□□□□□ -0.46
PRPF40A-207ENST00000471701 FARP1Q9Y4F1 1045 aaPredicted RBP12.19□□□□□ -0.46
PRPF40A-207ENST00000471701 FKBP8Q14318 412 aa12.18□□□□□ -0.46
PRPF40A-207ENST00000471701 C19orf67A6NJJ6 358 aa12.15□□□□□ -0.46
PRPF40A-207ENST00000471701 CREBZFQ9NS37 354 aa12.15□□□□□ -0.46
PRPF40A-207ENST00000471701 EVX2Q03828 476 aa12.14□□□□□ -0.47
PRPF40A-207ENST00000471701 CD44P16070 742 aaKnown RBP12.06□□□□□ -0.48
PRPF40A-207ENST00000471701 NPM1P06748 294 aaKnown RBP eCLIP12.05□□□□□ -0.48
PRPF40A-207ENST00000471701 PLEKHG5O94827 1062 aa12.04□□□□□ -0.48
PRPF40A-207ENST00000471701 MIER1Q8N108 512 aa12.01□□□□□ -0.49
PRPF40A-207ENST00000471701 PAK3O75914 559 aaPredicted RBP11.96□□□□□ -0.49
PRPF40A-207ENST00000471701 ZRANB1Q9UGI0 708 aa11.95□□□□□ -0.5
PRPF40A-207ENST00000471701 GABBR2O75899 941 aa11.94□□□□□ -0.5
PRPF40A-207ENST00000471701 PLCD3Q8N3E9 789 aa11.94□□□□□ -0.5
PRPF40A-207ENST00000471701 MNX1P50219 401 aaPredicted RBP11.93□□□□□ -0.5
PRPF40A-207ENST00000471701 FBXO3Q9UK99 471 aa11.92□□□□□ -0.5
PRPF40A-207ENST00000471701 CLCN6P51797 869 aa11.91□□□□□ -0.5
PRPF40A-207ENST00000471701 ZBTB47Q9UFB7 747 aaPredicted RBP11.85□□□□□ -0.51
PRPF40A-207ENST00000471701 ZNF579Q8NAF0 562 aaKnown RBP11.84□□□□□ -0.51
PRPF40A-207ENST00000471701 TSPYL2Q9H2G4 693 aaPredicted RBP11.8□□□□□ -0.52
PRPF40A-207ENST00000471701 DCBLD2Q96PD2 775 aa11.74□□□□□ -0.53
PRPF40A-207ENST00000471701 PHF12Q96QT6 1004 aa11.74□□□□□ -0.53
PRPF40A-207ENST00000471701 RASEFQ8IZ41 740 aa11.69□□□□□ -0.54
PRPF40A-207ENST00000471701 KLHL34Q8N239 644 aa11.69□□□□□ -0.54
PRPF40A-207ENST00000471701 GALR2O43603 387 aaPredicted RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 137 ms