RNA–Protein interactions for RNA: ENST00000469558.1

MCF2L-222, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 616 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-222ENST00000469558 LARP1Q6PKG0 1096 aaKnown RBP16.26■□□□□ 0.19
MCF2L-222ENST00000469558 STRN4Q9NRL3 753 aa16.25■□□□□ 0.19
MCF2L-222ENST00000469558 WNK3Q9BYP7 1800 aa16.24■□□□□ 0.19
MCF2L-222ENST00000469558 FAM98CQ17RN3 349 aaKnown RBP16.24■□□□□ 0.19
MCF2L-222ENST00000469558 SEPT12Q8IYM1 358 aa16.24■□□□□ 0.19
MCF2L-222ENST00000469558 UPF1Q92900 1129 aaKnown RBP eCLIP16.24■□□□□ 0.19
MCF2L-222ENST00000469558 KIF7Q2M1P5 1343 aa16.23■□□□□ 0.19
MCF2L-222ENST00000469558 CRB1P82279 1406 aa16.23■□□□□ 0.19
MCF2L-222ENST00000469558 FBLN1P23142 703 aa16.23■□□□□ 0.19
MCF2L-222ENST00000469558 CCDC9Q9Y3X0 531 aaKnown RBP16.23■□□□□ 0.19
MCF2L-222ENST00000469558 PEAK1Q9H792 1746 aa16.22■□□□□ 0.19
MCF2L-222ENST00000469558 ZBTB7CA1YPR0 619 aa16.22■□□□□ 0.19
MCF2L-222ENST00000469558 GGNBP2Q9H3C7 697 aa16.22■□□□□ 0.19
MCF2L-222ENST00000469558 ANKRD26Q9UPS8 1709 aa16.22■□□□□ 0.19
MCF2L-222ENST00000469558 PARP4Q9UKK3 1724 aaKnown RBP16.21■□□□□ 0.19
MCF2L-222ENST00000469558 WDR17Q8IZU2 1322 aa16.2■□□□□ 0.18
MCF2L-222ENST00000469558 MAP3K19Q56UN5 1328 aa16.19■□□□□ 0.18
MCF2L-222ENST00000469558 LRRC37A3O60309 1634 aa16.19■□□□□ 0.18
MCF2L-222ENST00000469558 BARGINQ6ZT62 677 aa16.19■□□□□ 0.18
MCF2L-222ENST00000469558 COG3Q96JB2 828 aa16.19■□□□□ 0.18
MCF2L-222ENST00000469558 DISP2A7MBM2 1401 aa16.19■□□□□ 0.18
MCF2L-222ENST00000469558 ERBB3P21860 1342 aa16.19■□□□□ 0.18
MCF2L-222ENST00000469558 EVA1CP58658 441 aa16.18■□□□□ 0.18
MCF2L-222ENST00000469558 POLR3GLQ9BT43 218 aa16.18■□□□□ 0.18
MCF2L-222ENST00000469558 TCP11L2Q8N4U5 519 aa16.17■□□□□ 0.18
MCF2L-222ENST00000469558 PANK3Q9H999 370 aa16.17■□□□□ 0.18
MCF2L-222ENST00000469558 USP35Q9P2H5 1018 aa16.17■□□□□ 0.18
MCF2L-222ENST00000469558 BLMP54132 1417 aaPredicted RBP16.17■□□□□ 0.18
MCF2L-222ENST00000469558 WASHC2AQ641Q2 1341 aa16.17■□□□□ 0.18
MCF2L-222ENST00000469558 CCDC7Q96M83 1385 aa16.16■□□□□ 0.18
MCF2L-222ENST00000469558 FAM208AQ9UK61 1670 aaKnown RBP16.16■□□□□ 0.18
MCF2L-222ENST00000469558 KRT27Q7Z3Y8 459 aa16.16■□□□□ 0.18
MCF2L-222ENST00000469558 RRS1Q15050 365 aaKnown RBP16.15■□□□□ 0.18
MCF2L-222ENST00000469558 IP6K1Q92551 441 aa16.15■□□□□ 0.18
MCF2L-222ENST00000469558 THRAP3Q9Y2W1 955 aaKnown RBP16.15■□□□□ 0.18
MCF2L-222ENST00000469558 RTL1A6NKG5 1358 aa16.14■□□□□ 0.17
MCF2L-222ENST00000469558 RGPD2P0DJD1 1756 aa16.14■□□□□ 0.17
MCF2L-222ENST00000469558 CARD10Q9BWT7 1032 aa16.14■□□□□ 0.17
MCF2L-222ENST00000469558 CGNL1Q0VF96 1302 aa16.14■□□□□ 0.17
MCF2L-222ENST00000469558 HOXC9P31274 260 aa16.13■□□□□ 0.17
MCF2L-222ENST00000469558 FAM182BQ5T319 152 aa16.13■□□□□ 0.17
MCF2L-222ENST00000469558 TOM1L2Q6ZVM7 507 aa16.13■□□□□ 0.17
MCF2L-222ENST00000469558 ANKRD24Q8TF21 1146 aa16.13■□□□□ 0.17
MCF2L-222ENST00000469558 TNS1Q9HBL0 1735 aaKnown RBP16.13■□□□□ 0.17
MCF2L-222ENST00000469558 A0A0G2JS52 829 aa16.11■□□□□ 0.17
MCF2L-222ENST00000469558 PER1O15534 1290 aaPredicted RBP16.11■□□□□ 0.17
MCF2L-222ENST00000469558 MYT1Q01538 1121 aa16.11■□□□□ 0.17
MCF2L-222ENST00000469558 AMER1Q5JTC6 1135 aaPredicted RBP16.1■□□□□ 0.17
MCF2L-222ENST00000469558 EMILIN1Q9Y6C2 1016 aa16.1■□□□□ 0.17
MCF2L-222ENST00000469558 NSD2O96028 1365 aa16.1■□□□□ 0.17
MCF2L-222ENST00000469558 MAP2P11137 1827 aaKnown RBP16.1■□□□□ 0.17
MCF2L-222ENST00000469558 SMG6Q86US8 1419 aaKnown RBP16.1■□□□□ 0.17
MCF2L-222ENST00000469558 INSRP06213 1382 aa16.09■□□□□ 0.17
MCF2L-222ENST00000469558 KIF24Q5T7B8 1368 aa16.09■□□□□ 0.17
MCF2L-222ENST00000469558 RGPD1P0DJD0 1748 aa16.08■□□□□ 0.17
MCF2L-222ENST00000469558 CSB-PGBD3P0DP91 1061 aa16.08■□□□□ 0.16
MCF2L-222ENST00000469558 FLT4P35916 1363 aa16.08■□□□□ 0.16
MCF2L-222ENST00000469558 TNS2Q63HR2 1409 aa16.08■□□□□ 0.16
MCF2L-222ENST00000469558 SHANK3Q9BYB0 1731 aa16.08■□□□□ 0.16
MCF2L-222ENST00000469558 AMPHP49418 695 aa16.07■□□□□ 0.16
MCF2L-222ENST00000469558 HSP90AB2PQ58FF8 381 aa16.07■□□□□ 0.16
MCF2L-222ENST00000469558 NCAPD2Q15021 1401 aa16.07■□□□□ 0.16
MCF2L-222ENST00000469558 LTV1Q96GA3 475 aaPredicted RBP16.06■□□□□ 0.16
MCF2L-222ENST00000469558 NLRP2Q9NX02 1062 aa16.06■□□□□ 0.16
MCF2L-222ENST00000469558 POLKQ9UBT6 870 aa16.06■□□□□ 0.16
MCF2L-222ENST00000469558 SBF2Q86WG5 1849 aa16.05■□□□□ 0.16
MCF2L-222ENST00000469558 MEGF6O75095 1541 aa16.05■□□□□ 0.16
MCF2L-222ENST00000469558 CCDC125Q86Z20 511 aa16.04■□□□□ 0.16
MCF2L-222ENST00000469558 MARCH10Q8NA82 808 aaPredicted RBP16.04■□□□□ 0.16
MCF2L-222ENST00000469558 OVOS2A0A0G2JMS6 1433 aa16.03■□□□□ 0.16
MCF2L-222ENST00000469558 BCL9O00512 1426 aa16.03■□□□□ 0.16
MCF2L-222ENST00000469558 DDB1Q16531 1140 aa16.03■□□□□ 0.16
MCF2L-222ENST00000469558 NBPF6Q5VWK0 638 aa16.03■□□□□ 0.16
MCF2L-222ENST00000469558 NBPF4Q96M43 638 aa16.03■□□□□ 0.16
MCF2L-222ENST00000469558 CDCA7Q9BWT1 371 aaPredicted RBP16.03■□□□□ 0.16
MCF2L-222ENST00000469558 TNNT2P45379 298 aaPredicted RBP16.02■□□□□ 0.16
MCF2L-222ENST00000469558 PDE3BQ13370 1112 aa16.02■□□□□ 0.16
MCF2L-222ENST00000469558 DEFB132Q7Z7B7 95 aa16.02■□□□□ 0.16
MCF2L-222ENST00000469558 KNSTRNQ9Y448 316 aa16.02■□□□□ 0.16
MCF2L-222ENST00000469558 NPC1L1Q9UHC9 1359 aa16.01■□□□□ 0.15
MCF2L-222ENST00000469558 IL2RBP14784 551 aa16.01■□□□□ 0.15
MCF2L-222ENST00000469558 FAM196AQ6ZSG2 479 aa16.01■□□□□ 0.15
MCF2L-222ENST00000469558 PTF1AQ7RTS3 328 aa16■□□□□ 0.15
MCF2L-222ENST00000469558 USHBP1Q8N6Y0 703 aa16■□□□□ 0.15
MCF2L-222ENST00000469558 TRIM37O94972 964 aa15.98■□□□□ 0.15
MCF2L-222ENST00000469558 PKD1L3Q7Z443 1732 aa15.98■□□□□ 0.15
MCF2L-222ENST00000469558 MORC1Q86VD1 984 aa15.98■□□□□ 0.15
MCF2L-222ENST00000469558 NHSQ6T4R5 1651 aa15.98■□□□□ 0.15
MCF2L-222ENST00000469558 RREB1Q92766 1687 aa15.98■□□□□ 0.15
MCF2L-222ENST00000469558 EXOC5O00471 708 aa15.97■□□□□ 0.15
MCF2L-222ENST00000469558 PPM1GO15355 546 aaPredicted RBP15.97■□□□□ 0.15
MCF2L-222ENST00000469558 EIF4A2Q14240 407 aaKnown RBP15.97■□□□□ 0.15
MCF2L-222ENST00000469558 RGPD3A6NKT7 1758 aaPredicted RBP15.96■□□□□ 0.15
MCF2L-222ENST00000469558 RGPD4Q7Z3J3 1758 aa15.96■□□□□ 0.15
MCF2L-222ENST00000469558 EYA1Q99502 592 aa15.96■□□□□ 0.15
MCF2L-222ENST00000469558 CC2D1BQ5T0F9 858 aaKnown RBP15.95■□□□□ 0.14
MCF2L-222ENST00000469558 COL3A1P02461 1466 aaPredicted RBP15.95■□□□□ 0.14
MCF2L-222ENST00000469558 NUP188Q5SRE5 1749 aa15.94■□□□□ 0.14
MCF2L-222ENST00000469558 CAMKK2Q96RR4 588 aa15.94■□□□□ 0.14
MCF2L-222ENST00000469558 DOT1LQ8TEK3 1739 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms