RNA–Protein interactions for RNA: ENST00000469232.5

NPHP3-204, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,616 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-204ENST00000469232 PHRF1Q9P1Y6 1649 aaKnown RBP11.04□□□□□ -0.64
NPHP3-204ENST00000469232 CRYBG1Q9Y4K1 1723 aa11.04□□□□□ -0.64
NPHP3-204ENST00000469232 COL3A1P02461 1466 aaPredicted RBP11.04□□□□□ -0.64
NPHP3-204ENST00000469232 NFAT5O94916 1531 aa11.04□□□□□ -0.64
NPHP3-204ENST00000469232 CERKQ8TCT0 537 aa11.04□□□□□ -0.64
NPHP3-204ENST00000469232 COG3Q96JB2 828 aa11.04□□□□□ -0.64
NPHP3-204ENST00000469232 ZRANB1Q9UGI0 708 aa11.04□□□□□ -0.64
NPHP3-204ENST00000469232 KIF24Q5T7B8 1368 aa11.04□□□□□ -0.64
NPHP3-204ENST00000469232 TOM1O60784 492 aa11.02□□□□□ -0.64
NPHP3-204ENST00000469232 PNISRQ8TF01 805 aaKnown RBP11.02□□□□□ -0.64
NPHP3-204ENST00000469232 POLKQ9UBT6 870 aa11.02□□□□□ -0.64
NPHP3-204ENST00000469232 ARHGEF10O15013 1369 aa11.02□□□□□ -0.64
NPHP3-204ENST00000469232 CDK12Q9NYV4 1490 aaPredicted RBP11.02□□□□□ -0.65
NPHP3-204ENST00000469232 ABTB2Q8N961 1025 aa11.01□□□□□ -0.65
NPHP3-204ENST00000469232 MAP2P11137 1827 aaKnown RBP11□□□□□ -0.65
NPHP3-204ENST00000469232 COL16A1Q07092 1604 aaPredicted RBP11□□□□□ -0.65
NPHP3-204ENST00000469232 COL22A1Q8NFW1 1626 aaPredicted RBP11□□□□□ -0.65
NPHP3-204ENST00000469232 ABCC6O95255 1503 aa11□□□□□ -0.65
NPHP3-204ENST00000469232 MTHFSP49914 203 aa11□□□□□ -0.65
NPHP3-204ENST00000469232 NLRP6P59044 892 aa11□□□□□ -0.65
NPHP3-204ENST00000469232 DDX17Q92841 729 aaKnown RBP11□□□□□ -0.65
NPHP3-204ENST00000469232 SHPRHQ149N8 1683 aa11□□□□□ -0.65
NPHP3-204ENST00000469232 PLEKHG5O94827 1062 aa10.99□□□□□ -0.65
NPHP3-204ENST00000469232 MRS2Q9HD23 443 aa10.99□□□□□ -0.65
NPHP3-204ENST00000469232 PEAK1Q9H792 1746 aa10.99□□□□□ -0.65
NPHP3-204ENST00000469232 RTL1A6NKG5 1358 aa10.99□□□□□ -0.65
NPHP3-204ENST00000469232 XPCQ01831 940 aaPredicted RBP10.98□□□□□ -0.65
NPHP3-204ENST00000469232 PLCD3Q8N3E9 789 aa10.98□□□□□ -0.65
NPHP3-204ENST00000469232 KCNH5Q8NCM2 988 aa10.98□□□□□ -0.65
NPHP3-204ENST00000469232 FBXO3Q9UK99 471 aa10.98□□□□□ -0.65
NPHP3-204ENST00000469232 CPDO75976 1380 aa10.98□□□□□ -0.65
NPHP3-204ENST00000469232 ABCA3Q99758 1704 aa10.97□□□□□ -0.65
NPHP3-204ENST00000469232 MAP3K19Q56UN5 1328 aa10.97□□□□□ -0.65
NPHP3-204ENST00000469232 PAK3O75914 559 aaPredicted RBP10.97□□□□□ -0.65
NPHP3-204ENST00000469232 GCP02774 474 aa10.97□□□□□ -0.65
NPHP3-204ENST00000469232 ARHGEF25Q86VW2 580 aa10.97□□□□□ -0.65
NPHP3-204ENST00000469232 UBAP1LF5GYI3 381 aa10.96□□□□□ -0.65
NPHP3-204ENST00000469232 GABBR2O75899 941 aa10.96□□□□□ -0.65
NPHP3-204ENST00000469232 LRRC59Q96AG4 307 aaKnown RBP10.96□□□□□ -0.65
NPHP3-204ENST00000469232 EMILIN1Q9Y6C2 1016 aa10.96□□□□□ -0.65
NPHP3-204ENST00000469232 FLT4P35916 1363 aa10.96□□□□□ -0.66
NPHP3-204ENST00000469232 COL18A1P39060 1754 aa10.96□□□□□ -0.66
NPHP3-204ENST00000469232 FBLN1P23142 703 aa10.95□□□□□ -0.66
NPHP3-204ENST00000469232 BLMP54132 1417 aaPredicted RBP10.95□□□□□ -0.66
NPHP3-204ENST00000469232 PHLPP1O60346 1717 aa10.95□□□□□ -0.66
NPHP3-204ENST00000469232 RGPD1P0DJD0 1748 aa10.95□□□□□ -0.66
NPHP3-204ENST00000469232 TNNT2P45379 298 aaPredicted RBP10.95□□□□□ -0.66
NPHP3-204ENST00000469232 CNGB1Q14028 1251 aaPredicted RBP10.95□□□□□ -0.66
NPHP3-204ENST00000469232 CFAP53Q96M91 514 aa10.95□□□□□ -0.66
NPHP3-204ENST00000469232 LTN1O94822 1766 aa10.94□□□□□ -0.66
NPHP3-204ENST00000469232 IL13P35225 146 aa10.94□□□□□ -0.66
NPHP3-204ENST00000469232 NCAPD2Q15021 1401 aa10.94□□□□□ -0.66
NPHP3-204ENST00000469232 RRS1Q15050 365 aaKnown RBP10.94□□□□□ -0.66
NPHP3-204ENST00000469232 IP6K1Q92551 441 aa10.94□□□□□ -0.66
NPHP3-204ENST00000469232 HOXC9P31274 260 aa10.93□□□□□ -0.66
NPHP3-204ENST00000469232 NUTM2GQ5VZR2 741 aa10.93□□□□□ -0.66
NPHP3-204ENST00000469232 ZNF579Q8NAF0 562 aaKnown RBP10.93□□□□□ -0.66
NPHP3-204ENST00000469232 LMO7Q8WWI1 1683 aa10.92□□□□□ -0.66
NPHP3-204ENST00000469232 DIAPH1O60610 1272 aaKnown RBP10.91□□□□□ -0.66
NPHP3-204ENST00000469232 ADAMTS8Q9UP79 889 aa10.91□□□□□ -0.66
NPHP3-204ENST00000469232 CAMTA1Q9Y6Y1 1673 aa10.91□□□□□ -0.66
NPHP3-204ENST00000469232 EIF4A2Q14240 407 aaKnown RBP10.91□□□□□ -0.66
NPHP3-204ENST00000469232 HSP90AB2PQ58FF8 381 aa10.91□□□□□ -0.66
NPHP3-204ENST00000469232 KDRP35968 1356 aa10.91□□□□□ -0.66
NPHP3-204ENST00000469232 IGSF1Q8N6C5 1336 aa10.89□□□□□ -0.67
NPHP3-204ENST00000469232 NUDCQ9Y266 331 aa10.89□□□□□ -0.67
NPHP3-204ENST00000469232 KIAA0232Q92628 1395 aa10.88□□□□□ -0.67
NPHP3-204ENST00000469232 PLEKHG2Q9H7P9 1386 aa10.88□□□□□ -0.67
NPHP3-204ENST00000469232 JCADQ9P266 1359 aa10.88□□□□□ -0.67
NPHP3-204ENST00000469232 FCHSD2O94868 740 aa10.88□□□□□ -0.67
NPHP3-204ENST00000469232 AMPHP49418 695 aa10.88□□□□□ -0.67
NPHP3-204ENST00000469232 PIP4K2BP78356 416 aa10.88□□□□□ -0.67
NPHP3-204ENST00000469232 LMOD2Q6P5Q4 547 aa10.88□□□□□ -0.67
NPHP3-204ENST00000469232 CABLES1Q8TDN4 633 aa10.88□□□□□ -0.67
NPHP3-204ENST00000469232 PLEKHF1Q96S99 279 aa10.88□□□□□ -0.67
NPHP3-204ENST00000469232 WDR43Q15061 677 aaKnown RBP eCLIP10.87□□□□□ -0.67
NPHP3-204ENST00000469232 FAM9BQ8IZU0 186 aa10.87□□□□□ -0.67
NPHP3-204ENST00000469232 NGEFQ8N5V2 710 aa10.87□□□□□ -0.67
NPHP3-204ENST00000469232 ZBTB47Q9UFB7 747 aaPredicted RBP10.87□□□□□ -0.67
NPHP3-204ENST00000469232 FAM208AQ9UK61 1670 aaKnown RBP10.87□□□□□ -0.67
NPHP3-204ENST00000469232 RSPH6AQ9H0K4 717 aa10.87□□□□□ -0.67
NPHP3-204ENST00000469232 AXIN2Q9Y2T1 843 aa10.87□□□□□ -0.67
NPHP3-204ENST00000469232 COL14A1Q05707 1796 aaKnown RBP10.87□□□□□ -0.67
NPHP3-204ENST00000469232 VASPP50552 380 aaPredicted RBP10.86□□□□□ -0.67
NPHP3-204ENST00000469232 CLCN6P51797 869 aa10.86□□□□□ -0.67
NPHP3-204ENST00000469232 ERBB3P21860 1342 aa10.86□□□□□ -0.67
NPHP3-204ENST00000469232 PPM1GO15355 546 aaPredicted RBP10.85□□□□□ -0.67
NPHP3-204ENST00000469232 SOX12O15370 315 aa10.85□□□□□ -0.67
NPHP3-204ENST00000469232 ZC3H6P61129 1189 aaKnown RBP10.85□□□□□ -0.67
NPHP3-204ENST00000469232 PHF12Q96QT6 1004 aa10.85□□□□□ -0.67
NPHP3-204ENST00000469232 EYA1Q99502 592 aa10.85□□□□□ -0.67
NPHP3-204ENST00000469232 TSPYL2Q9H2G4 693 aaPredicted RBP10.85□□□□□ -0.67
NPHP3-204ENST00000469232 SPATA31A6Q5VVP1 1343 aa10.85□□□□□ -0.67
NPHP3-204ENST00000469232 RGPD5Q99666 1765 aa10.85□□□□□ -0.67
NPHP3-204ENST00000469232 COL5A2P05997 1499 aaPredicted RBP10.84□□□□□ -0.67
NPHP3-204ENST00000469232 U2AF1L5P0DN76 240 aaPredicted RBP10.84□□□□□ -0.67
NPHP3-204ENST00000469232 U2AF1Q01081 240 aaKnown RBP eCLIP10.84□□□□□ -0.67
NPHP3-204ENST00000469232 RUNDC1Q96C34 613 aa10.84□□□□□ -0.67
NPHP3-204ENST00000469232 PNNQ9H307 717 aaKnown RBP10.84□□□□□ -0.67
NPHP3-204ENST00000469232 ZBED9Q6R2W3 1325 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms