RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 PIK3C2AO00443 1686 aa10.98□□□□□ -0.65
HDAC6-216ENST00000468949 FYB1O15117 783 aa10.98□□□□□ -0.65
HDAC6-216ENST00000468949 SOX12O15370 315 aa10.98□□□□□ -0.65
HDAC6-216ENST00000468949 RXRBP28702 533 aa10.98□□□□□ -0.65
HDAC6-216ENST00000468949 TNNT2P45379 298 aaPredicted RBP10.98□□□□□ -0.65
HDAC6-216ENST00000468949 TRPC5Q9UL62 973 aaPredicted RBP10.98□□□□□ -0.65
HDAC6-216ENST00000468949 GLI3P10071 1580 aa10.98□□□□□ -0.65
HDAC6-216ENST00000468949 ANKRD26Q9UPS8 1709 aa10.98□□□□□ -0.65
HDAC6-216ENST00000468949 RBM6P78332 1123 aaKnown RBP10.97□□□□□ -0.65
HDAC6-216ENST00000468949 KCNH5Q8NCM2 988 aa10.97□□□□□ -0.65
HDAC6-216ENST00000468949 OVOS2A0A0J9YW53 1432 aa10.97□□□□□ -0.65
HDAC6-216ENST00000468949 OVOS2Q6IE36 1432 aa10.97□□□□□ -0.65
HDAC6-216ENST00000468949 USP31Q70CQ4 1352 aa10.96□□□□□ -0.65
HDAC6-216ENST00000468949 MYBBP1AQ9BQG0 1328 aaKnown RBP10.96□□□□□ -0.65
HDAC6-216ENST00000468949 ZBTB7CA1YPR0 619 aa10.96□□□□□ -0.65
HDAC6-216ENST00000468949 CABLES1Q8TDN4 633 aa10.96□□□□□ -0.65
HDAC6-216ENST00000468949 USP54Q70EL1 1684 aa10.95□□□□□ -0.66
HDAC6-216ENST00000468949 SLIT3O75094 1523 aa10.95□□□□□ -0.66
HDAC6-216ENST00000468949 PARD3Q8TEW0 1356 aa10.95□□□□□ -0.66
HDAC6-216ENST00000468949 PRKRIP1Q9H875 184 aaPredicted RBP10.95□□□□□ -0.66
HDAC6-216ENST00000468949 QTRT2Q9H974 415 aaKnown RBP10.95□□□□□ -0.66
HDAC6-216ENST00000468949 ZRANB1Q9UGI0 708 aa10.95□□□□□ -0.66
HDAC6-216ENST00000468949 LMO7Q8WWI1 1683 aa10.95□□□□□ -0.66
HDAC6-216ENST00000468949 USP19O94966 1318 aa10.94□□□□□ -0.66
HDAC6-216ENST00000468949 PPM1GO15355 546 aaPredicted RBP10.94□□□□□ -0.66
HDAC6-216ENST00000468949 C1QBPQ07021 282 aaKnown RBP10.94□□□□□ -0.66
HDAC6-216ENST00000468949 CFAP53Q96M91 514 aa10.94□□□□□ -0.66
HDAC6-216ENST00000468949 CAPN15O75808 1086 aa10.93□□□□□ -0.66
HDAC6-216ENST00000468949 UNC5CLQ8IV45 518 aa10.93□□□□□ -0.66
HDAC6-216ENST00000468949 KIAA0232Q92628 1395 aa10.92□□□□□ -0.66
HDAC6-216ENST00000468949 GCP02774 474 aa10.92□□□□□ -0.66
HDAC6-216ENST00000468949 AMPHP49418 695 aa10.92□□□□□ -0.66
HDAC6-216ENST00000468949 PRDM11Q9NQV5 511 aa10.92□□□□□ -0.66
HDAC6-216ENST00000468949 CPDO75976 1380 aa10.91□□□□□ -0.66
HDAC6-216ENST00000468949 AATKQ6ZMQ8 1374 aa10.91□□□□□ -0.66
HDAC6-216ENST00000468949 ABCC6O95255 1503 aa10.91□□□□□ -0.66
HDAC6-216ENST00000468949 PPP2R1AP30153 589 aa10.91□□□□□ -0.66
HDAC6-216ENST00000468949 RRS1Q15050 365 aaKnown RBP10.91□□□□□ -0.66
HDAC6-216ENST00000468949 THSD7AQ9UPZ6 1657 aa10.91□□□□□ -0.66
HDAC6-216ENST00000468949 RTL1A6NKG5 1358 aa10.9□□□□□ -0.66
HDAC6-216ENST00000468949 ZC3H6P61129 1189 aaKnown RBP10.9□□□□□ -0.66
HDAC6-216ENST00000468949 FKBP8Q14318 412 aa10.9□□□□□ -0.66
HDAC6-216ENST00000468949 VPS72Q15906 364 aa10.9□□□□□ -0.66
HDAC6-216ENST00000468949 GJD4Q96KN9 370 aaPredicted RBP10.9□□□□□ -0.66
HDAC6-216ENST00000468949 SMG6Q86US8 1419 aaKnown RBP10.9□□□□□ -0.66
HDAC6-216ENST00000468949 FLT4P35916 1363 aa10.9□□□□□ -0.67
HDAC6-216ENST00000468949 NFAT5O94916 1531 aa10.89□□□□□ -0.67
HDAC6-216ENST00000468949 FAM83GA6ND36 823 aa10.89□□□□□ -0.67
HDAC6-216ENST00000468949 MIER1Q8N108 512 aa10.89□□□□□ -0.67
HDAC6-216ENST00000468949 MRS2Q9HD23 443 aa10.89□□□□□ -0.67
HDAC6-216ENST00000468949 KIF24Q5T7B8 1368 aa10.89□□□□□ -0.67
HDAC6-216ENST00000468949 BRWD3Q6RI45 1802 aa10.88□□□□□ -0.67
HDAC6-216ENST00000468949 MAP3K19Q56UN5 1328 aa10.88□□□□□ -0.67
HDAC6-216ENST00000468949 MTHFSP49914 203 aa10.88□□□□□ -0.67
HDAC6-216ENST00000468949 BTG4Q9NY30 223 aa10.88□□□□□ -0.67
HDAC6-216ENST00000468949 CCDC9Q9Y3X0 531 aaKnown RBP10.88□□□□□ -0.67
HDAC6-216ENST00000468949 EMILIN1Q9Y6C2 1016 aa10.88□□□□□ -0.67
HDAC6-216ENST00000468949 WNK3Q9BYP7 1800 aa10.88□□□□□ -0.67
HDAC6-216ENST00000468949 CCER2I3L3R5 266 aa10.87□□□□□ -0.67
HDAC6-216ENST00000468949 WDR43Q15061 677 aaKnown RBP eCLIP10.87□□□□□ -0.67
HDAC6-216ENST00000468949 POLKQ9UBT6 870 aa10.87□□□□□ -0.67
HDAC6-216ENST00000468949 NUDCQ9Y266 331 aa10.87□□□□□ -0.67
HDAC6-216ENST00000468949 CAMTA1Q9Y6Y1 1673 aa10.87□□□□□ -0.67
HDAC6-216ENST00000468949 COL5A2P05997 1499 aaPredicted RBP10.87□□□□□ -0.67
HDAC6-216ENST00000468949 CSB-PGBD3P0DP91 1061 aa10.86□□□□□ -0.67
HDAC6-216ENST00000468949 FBLN1P23142 703 aa10.86□□□□□ -0.67
HDAC6-216ENST00000468949 LTN1O94822 1766 aa10.85□□□□□ -0.67
HDAC6-216ENST00000468949 COL18A1P39060 1754 aa10.85□□□□□ -0.67
HDAC6-216ENST00000468949 BLMP54132 1417 aaPredicted RBP10.85□□□□□ -0.67
HDAC6-216ENST00000468949 HOXC9P31274 260 aa10.85□□□□□ -0.67
HDAC6-216ENST00000468949 CHRNA2Q15822 529 aa10.85□□□□□ -0.67
HDAC6-216ENST00000468949 ARHGEF25Q86VW2 580 aa10.85□□□□□ -0.67
HDAC6-216ENST00000468949 UPF1Q92900 1129 aaKnown RBP eCLIP10.85□□□□□ -0.67
HDAC6-216ENST00000468949 SPATA31A5Q5VU36 1347 aa10.84□□□□□ -0.67
HDAC6-216ENST00000468949 SPATA31A7Q8IWB4 1347 aa10.84□□□□□ -0.67
HDAC6-216ENST00000468949 A0A0G2JS52 829 aa10.84□□□□□ -0.67
HDAC6-216ENST00000468949 U2SURPO15042 1029 aaKnown RBP10.84□□□□□ -0.67
HDAC6-216ENST00000468949 DIAPH1O60610 1272 aaKnown RBP10.84□□□□□ -0.67
HDAC6-216ENST00000468949 MYT1Q01538 1121 aa10.84□□□□□ -0.67
HDAC6-216ENST00000468949 IP6K1Q92551 441 aa10.84□□□□□ -0.67
HDAC6-216ENST00000468949 LTV1Q96GA3 475 aaPredicted RBP10.84□□□□□ -0.67
HDAC6-216ENST00000468949 PARP4Q9UKK3 1724 aaKnown RBP10.84□□□□□ -0.67
HDAC6-216ENST00000468949 FAM208AQ9UK61 1670 aaKnown RBP10.83□□□□□ -0.68
HDAC6-216ENST00000468949 INSRP06213 1382 aa10.83□□□□□ -0.68
HDAC6-216ENST00000468949 EVA1CP58658 441 aa10.83□□□□□ -0.68
HDAC6-216ENST00000468949 MAP2P11137 1827 aaKnown RBP10.83□□□□□ -0.68
HDAC6-216ENST00000468949 LRRC37A3O60309 1634 aa10.83□□□□□ -0.68
HDAC6-216ENST00000468949 CRB1P82279 1406 aa10.83□□□□□ -0.68
HDAC6-216ENST00000468949 SPATA31A1Q5TZJ5 1347 aa10.83□□□□□ -0.68
HDAC6-216ENST00000468949 RGPD1P0DJD0 1748 aa10.82□□□□□ -0.68
HDAC6-216ENST00000468949 PEAK1Q9H792 1746 aa10.82□□□□□ -0.68
HDAC6-216ENST00000468949 NEFMP07197 916 aa10.82□□□□□ -0.68
HDAC6-216ENST00000468949 HSP90AB2PQ58FF8 381 aa10.82□□□□□ -0.68
HDAC6-216ENST00000468949 SEPT12Q8IYM1 358 aa10.82□□□□□ -0.68
HDAC6-216ENST00000468949 ANKRD24Q8TF21 1146 aa10.82□□□□□ -0.68
HDAC6-216ENST00000468949 STRN4Q9NRL3 753 aa10.82□□□□□ -0.68
HDAC6-216ENST00000468949 RGPD5Q99666 1765 aa10.81□□□□□ -0.68
HDAC6-216ENST00000468949 ONECUT3O60422 494 aaPredicted RBP10.81□□□□□ -0.68
HDAC6-216ENST00000468949 U2AF1L5P0DN76 240 aaPredicted RBP10.81□□□□□ -0.68
HDAC6-216ENST00000468949 U2AF1Q01081 240 aaKnown RBP eCLIP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms