RNA–Protein interactions for RNA: ENST00000468454.1

PTPRN-212, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 504 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-212ENST00000468454 USP19O94966 1318 aa21.44■■□□□ 1.02
PTPRN-212ENST00000468454 ITSN1Q15811 1721 aa21.43■■□□□ 1.02
PTPRN-212ENST00000468454 CDK19Q9BWU1 502 aa21.43■■□□□ 1.02
PTPRN-212ENST00000468454 POLR3AO14802 1390 aaPredicted RBP21.42■■□□□ 1.02
PTPRN-212ENST00000468454 SHANK3Q9BYB0 1731 aa21.41■■□□□ 1.02
PTPRN-212ENST00000468454 PELP1Q8IZL8 1130 aaKnown RBP21.4■■□□□ 1.02
PTPRN-212ENST00000468454 KDM2AQ9Y2K7 1162 aa21.4■■□□□ 1.02
PTPRN-212ENST00000468454 TOM1L2Q6ZVM7 507 aa21.39■■□□□ 1.01
PTPRN-212ENST00000468454 KLHL34Q8N239 644 aa21.39■■□□□ 1.01
PTPRN-212ENST00000468454 AXIN2Q9Y2T1 843 aa21.37■■□□□ 1.01
PTPRN-212ENST00000468454 TOPAZ1Q8N9V7 1692 aa21.37■■□□□ 1.01
PTPRN-212ENST00000468454 MAP3K5Q99683 1374 aa21.36■■□□□ 1.01
PTPRN-212ENST00000468454 NLRP13Q86W25 1043 aa21.36■■□□□ 1.01
PTPRN-212ENST00000468454 STAC3Q96MF2 364 aa21.36■■□□□ 1.01
PTPRN-212ENST00000468454 PLEKHG3A1L390 1219 aa21.35■■□□□ 1.01
PTPRN-212ENST00000468454 ARHGEF28Q8N1W1 1705 aaKnown RBP21.35■■□□□ 1.01
PTPRN-212ENST00000468454 AKAP12Q02952 1782 aa21.34■■□□□ 1.01
PTPRN-212ENST00000468454 ZNF827Q17R98 1081 aa21.34■■□□□ 1.01
PTPRN-212ENST00000468454 CCDC61Q9Y6R9 512 aa21.34■■□□□ 1.01
PTPRN-212ENST00000468454 BCL9O00512 1426 aa21.34■■□□□ 1.01
PTPRN-212ENST00000468454 WNK3Q9BYP7 1800 aa21.34■■□□□ 1.01
PTPRN-212ENST00000468454 NLGN2Q8NFZ4 835 aa21.33■■□□□ 1.01
PTPRN-212ENST00000468454 ACSBG1Q96GR2 724 aa21.32■■□□□ 1
PTPRN-212ENST00000468454 AATKQ6ZMQ8 1374 aa21.32■■□□□ 1
PTPRN-212ENST00000468454 COL18A1P39060 1754 aa21.31■■□□□ 1
PTPRN-212ENST00000468454 PAPPAQ13219 1627 aa21.3■■□□□ 1
PTPRN-212ENST00000468454 DCAF11Q8TEB1 546 aa21.3■■□□□ 1
PTPRN-212ENST00000468454 WDR17Q8IZU2 1322 aa21.29■■□□□ 1
PTPRN-212ENST00000468454 YBX3P16989 372 aaKnown RBP eCLIP21.28■■□□□ 1
PTPRN-212ENST00000468454 NLRP6P59044 892 aa21.28■■□□□ 1
PTPRN-212ENST00000468454 LRRC4BQ9NT99 713 aa21.28■■□□□ 1
PTPRN-212ENST00000468454 EXOC5O00471 708 aa21.26■□□□□ 0.99
PTPRN-212ENST00000468454 PPIP5K1Q6PFW1 1433 aa21.25■□□□□ 0.99
PTPRN-212ENST00000468454 RGPD5Q99666 1765 aa21.25■□□□□ 0.99
PTPRN-212ENST00000468454 SLIT3O75094 1523 aa21.24■□□□□ 0.99
PTPRN-212ENST00000468454 ATP10DQ9P241 1426 aa21.24■□□□□ 0.99
PTPRN-212ENST00000468454 CDCA7Q9BWT1 371 aaPredicted RBP21.24■□□□□ 0.99
PTPRN-212ENST00000468454 RAB3GAP2Q9H2M9 1393 aa21.23■□□□□ 0.99
PTPRN-212ENST00000468454 CARD10Q9BWT7 1032 aa21.23■□□□□ 0.99
PTPRN-212ENST00000468454 CABP2Q9NPB3 220 aa21.23■□□□□ 0.99
PTPRN-212ENST00000468454 NHSQ6T4R5 1651 aa21.23■□□□□ 0.99
PTPRN-212ENST00000468454 SOX12O15370 315 aa21.22■□□□□ 0.99
PTPRN-212ENST00000468454 CSB-PGBD3P0DP91 1061 aa21.22■□□□□ 0.99
PTPRN-212ENST00000468454 HSPA6P17066 643 aa21.22■□□□□ 0.99
PTPRN-212ENST00000468454 AKT1S1Q96B36 256 aa21.21■□□□□ 0.99
PTPRN-212ENST00000468454 POLD1P28340 1107 aa21.2■□□□□ 0.98
PTPRN-212ENST00000468454 KCNQ4P56696 695 aa21.2■□□□□ 0.98
PTPRN-212ENST00000468454 ZNF526Q8TF50 670 aaPredicted RBP21.2■□□□□ 0.98
PTPRN-212ENST00000468454 PNPLA7Q6ZV29 1317 aa21.2■□□□□ 0.98
PTPRN-212ENST00000468454 SRPK2P78362 688 aaKnown RBP21.19■□□□□ 0.98
PTPRN-212ENST00000468454 ARHGEF25Q86VW2 580 aa21.19■□□□□ 0.98
PTPRN-212ENST00000468454 CPSF1Q10570 1443 aaKnown RBP21.19■□□□□ 0.98
PTPRN-212ENST00000468454 BTAF1O14981 1849 aa21.18■□□□□ 0.98
PTPRN-212ENST00000468454 USP6P35125 1406 aa21.18■□□□□ 0.98
PTPRN-212ENST00000468454 TNS2Q63HR2 1409 aa21.18■□□□□ 0.98
PTPRN-212ENST00000468454 PIK3C2AO00443 1686 aa21.18■□□□□ 0.98
PTPRN-212ENST00000468454 CABP1Q9NZU7 370 aa21.17■□□□□ 0.98
PTPRN-212ENST00000468454 COL24A1Q17RW2 1714 aa21.17■□□□□ 0.98
PTPRN-212ENST00000468454 GPBP1L1Q9HC44 474 aaPredicted RBP21.16■□□□□ 0.98
PTPRN-212ENST00000468454 GRIN3BO60391 1043 aa21.15■□□□□ 0.98
PTPRN-212ENST00000468454 SLC16A10Q8TF71 515 aa21.15■□□□□ 0.98
PTPRN-212ENST00000468454 BRD4O60885 1362 aaPredicted RBP21.14■□□□□ 0.98
PTPRN-212ENST00000468454 TUBGCP6Q96RT7 1819 aa21.13■□□□□ 0.97
PTPRN-212ENST00000468454 TRPM1Q7Z4N2 1603 aa21.12■□□□□ 0.97
PTPRN-212ENST00000468454 NBPF1Q3BBV0 1214 aa21.11■□□□□ 0.97
PTPRN-212ENST00000468454 TFCP2L1Q9NZI6 479 aa21.11■□□□□ 0.97
PTPRN-212ENST00000468454 CCDC7Q96M83 1385 aa21.1■□□□□ 0.97
PTPRN-212ENST00000468454 ABCC6O95255 1503 aa21.1■□□□□ 0.97
PTPRN-212ENST00000468454 QSER1Q2KHR3 1735 aa21.09■□□□□ 0.97
PTPRN-212ENST00000468454 KAT6BQ8WYB5 2073 aa21.09■□□□□ 0.97
PTPRN-212ENST00000468454 ADCY9O60503 1353 aa21.08■□□□□ 0.96
PTPRN-212ENST00000468454 MSL1Q68DK7 614 aa21.07■□□□□ 0.96
PTPRN-212ENST00000468454 NLRP2Q9NX02 1062 aa21.06■□□□□ 0.96
PTPRN-212ENST00000468454 NFAT5O94916 1531 aa21.05■□□□□ 0.96
PTPRN-212ENST00000468454 KCNH5Q8NCM2 988 aa21.05■□□□□ 0.96
PTPRN-212ENST00000468454 WWC3Q9ULE0 1092 aa21.05■□□□□ 0.96
PTPRN-212ENST00000468454 TTC21BQ7Z4L5 1316 aa21.04■□□□□ 0.96
PTPRN-212ENST00000468454 MSH5O43196 834 aa21.04■□□□□ 0.96
PTPRN-212ENST00000468454 CAPN15O75808 1086 aa21.04■□□□□ 0.96
PTPRN-212ENST00000468454 IL2RBP14784 551 aa21.04■□□□□ 0.96
PTPRN-212ENST00000468454 SLC27A3Q5K4L6 730 aa21.04■□□□□ 0.96
PTPRN-212ENST00000468454 COL23A1Q86Y22 540 aaPredicted RBP21.03■□□□□ 0.96
PTPRN-212ENST00000468454 DNAJC5GQ8N7S2 189 aa21.03■□□□□ 0.96
PTPRN-212ENST00000468454 CENPJQ9HC77 1338 aaPredicted RBP21.03■□□□□ 0.96
PTPRN-212ENST00000468454 QRICH2Q9H0J4 1663 aa21.02■□□□□ 0.96
PTPRN-212ENST00000468454 KIF3CO14782 793 aa21.02■□□□□ 0.96
PTPRN-212ENST00000468454 DDX54Q8TDD1 881 aaKnown RBP21.01■□□□□ 0.95
PTPRN-212ENST00000468454 COL13A1Q5TAT6 717 aaPredicted RBP21■□□□□ 0.95
PTPRN-212ENST00000468454 KIAA1210Q9ULL0 1709 aa20.99■□□□□ 0.95
PTPRN-212ENST00000468454 SYTL4Q96C24 671 aaPredicted RBP20.99■□□□□ 0.95
PTPRN-212ENST00000468454 ERBB3P21860 1342 aa20.99■□□□□ 0.95
PTPRN-212ENST00000468454 PRIM1P49642 420 aaKnown RBP20.98■□□□□ 0.95
PTPRN-212ENST00000468454 APLP1P51693 650 aa20.95■□□□□ 0.94
PTPRN-212ENST00000468454 ANKRD24Q8TF21 1146 aa20.95■□□□□ 0.94
PTPRN-212ENST00000468454 NSD2O96028 1365 aa20.95■□□□□ 0.94
PTPRN-212ENST00000468454 CCNL1Q9UK58 526 aaPredicted RBP20.94■□□□□ 0.94
PTPRN-212ENST00000468454 CD2APQ9Y5K6 639 aa20.94■□□□□ 0.94
PTPRN-212ENST00000468454 LY75O60449 1722 aa20.94■□□□□ 0.94
PTPRN-212ENST00000468454 PCNTO95613 3336 aa20.93■□□□□ 0.94
PTPRN-212ENST00000468454 HTRA3P83110 453 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms