RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 IL13P35225 146 aa14.35□□□□□ -0.11
MSX1-202ENST00000468421 AMPHP49418 695 aa14.35□□□□□ -0.11
MSX1-202ENST00000468421 HNRNPUQ00839 825 aaKnown RBP eCLIP14.35□□□□□ -0.11
MSX1-202ENST00000468421 HSP90AB2PQ58FF8 381 aa14.35□□□□□ -0.11
MSX1-202ENST00000468421 ILDR2Q71H61 639 aa14.35□□□□□ -0.11
MSX1-202ENST00000468421 ARHGEF25Q86VW2 580 aa14.35□□□□□ -0.11
MSX1-202ENST00000468421 SENP3-EIF4A1A0A087X0R7 540 aa14.34□□□□□ -0.11
MSX1-202ENST00000468421 EIF4A2Q14240 407 aaKnown RBP14.34□□□□□ -0.11
MSX1-202ENST00000468421 LMO7Q8WWI1 1683 aa14.33□□□□□ -0.11
MSX1-202ENST00000468421 ABCC6O95255 1503 aa14.33□□□□□ -0.12
MSX1-202ENST00000468421 ZBTB7CA1YPR0 619 aa14.33□□□□□ -0.12
MSX1-202ENST00000468421 U2SURPO15042 1029 aaKnown RBP14.33□□□□□ -0.12
MSX1-202ENST00000468421 CCDC146Q8IYE0 955 aa14.33□□□□□ -0.12
MSX1-202ENST00000468421 NUDCQ9Y266 331 aa14.33□□□□□ -0.12
MSX1-202ENST00000468421 CAMTA1Q9Y6Y1 1673 aa14.33□□□□□ -0.12
MSX1-202ENST00000468421 U2AF1L5P0DN76 240 aaPredicted RBP14.32□□□□□ -0.12
MSX1-202ENST00000468421 ZC3H6P61129 1189 aaKnown RBP14.32□□□□□ -0.12
MSX1-202ENST00000468421 U2AF1Q01081 240 aaKnown RBP eCLIP14.32□□□□□ -0.12
MSX1-202ENST00000468421 IP6K1Q92551 441 aa14.32□□□□□ -0.12
MSX1-202ENST00000468421 LRRC59Q96AG4 307 aaKnown RBP14.32□□□□□ -0.12
MSX1-202ENST00000468421 CPDO75976 1380 aa14.31□□□□□ -0.12
MSX1-202ENST00000468421 KIAA0232Q92628 1395 aa14.31□□□□□ -0.12
MSX1-202ENST00000468421 FAM208AQ9UK61 1670 aaKnown RBP14.3□□□□□ -0.12
MSX1-202ENST00000468421 DLG5Q8TDM6 1919 aa14.29□□□□□ -0.12
MSX1-202ENST00000468421 HMOX1P09601 288 aa14.28□□□□□ -0.12
MSX1-202ENST00000468421 CHRNA2Q15822 529 aa14.28□□□□□ -0.12
MSX1-202ENST00000468421 ZBED9Q6R2W3 1325 aa14.28□□□□□ -0.12
MSX1-202ENST00000468421 LTV1Q96GA3 475 aaPredicted RBP14.28□□□□□ -0.12
MSX1-202ENST00000468421 RSPH6AQ9H0K4 717 aa14.28□□□□□ -0.12
MSX1-202ENST00000468421 AXIN2Q9Y2T1 843 aa14.28□□□□□ -0.12
MSX1-202ENST00000468421 COL14A1Q05707 1796 aaKnown RBP14.27□□□□□ -0.12
MSX1-202ENST00000468421 PLCH1Q4KWH8 1693 aa14.27□□□□□ -0.12
MSX1-202ENST00000468421 IGSF1Q8N6C5 1336 aa14.27□□□□□ -0.12
MSX1-202ENST00000468421 AEBP1Q8IUX7 1158 aa14.27□□□□□ -0.13
MSX1-202ENST00000468421 RUNDC1Q96C34 613 aa14.27□□□□□ -0.13
MSX1-202ENST00000468421 PLEKHF1Q96S99 279 aa14.27□□□□□ -0.13
MSX1-202ENST00000468421 APAF1O14727 1248 aa14.26□□□□□ -0.13
MSX1-202ENST00000468421 HAP1P54257 671 aaPredicted RBP14.26□□□□□ -0.13
MSX1-202ENST00000468421 EYA1Q99502 592 aa14.26□□□□□ -0.13
MSX1-202ENST00000468421 NCAPD2Q15021 1401 aa14.25□□□□□ -0.13
MSX1-202ENST00000468421 KDRP35968 1356 aa14.25□□□□□ -0.13
MSX1-202ENST00000468421 FCHSD2O94868 740 aa14.25□□□□□ -0.13
MSX1-202ENST00000468421 PRKAR2BP31323 418 aa14.25□□□□□ -0.13
MSX1-202ENST00000468421 PRDM11Q9NQV5 511 aa14.25□□□□□ -0.13
MSX1-202ENST00000468421 SALL2Q9Y467 1007 aaPredicted RBP14.25□□□□□ -0.13
MSX1-202ENST00000468421 ERBB3P21860 1342 aa14.24□□□□□ -0.13
MSX1-202ENST00000468421 SULT6B1Q6IMI4 303 aa14.24□□□□□ -0.13
MSX1-202ENST00000468421 ANKRD24Q8TF21 1146 aa14.24□□□□□ -0.13
MSX1-202ENST00000468421 COL5A2P05997 1499 aaPredicted RBP14.24□□□□□ -0.13
MSX1-202ENST00000468421 NRAPQ86VF7 1730 aa14.24□□□□□ -0.13
MSX1-202ENST00000468421 TCP11L2Q8N4U5 519 aa14.23□□□□□ -0.13
MSX1-202ENST00000468421 JCADQ9P266 1359 aa14.22□□□□□ -0.13
MSX1-202ENST00000468421 NBPF6Q5VWK0 638 aa14.22□□□□□ -0.13
MSX1-202ENST00000468421 USHBP1Q8N6Y0 703 aa14.22□□□□□ -0.13
MSX1-202ENST00000468421 NBPF4Q96M43 638 aa14.22□□□□□ -0.13
MSX1-202ENST00000468421 RRP7AQ9Y3A4 280 aaKnown RBP14.22□□□□□ -0.13
MSX1-202ENST00000468421 MAPK8IP3Q9UPT6 1336 aa14.21□□□□□ -0.13
MSX1-202ENST00000468421 CENPBP07199 599 aaPredicted RBP14.21□□□□□ -0.13
MSX1-202ENST00000468421 HSPA1LP34931 641 aa14.21□□□□□ -0.13
MSX1-202ENST00000468421 PHACTR3Q96KR7 559 aa14.21□□□□□ -0.13
MSX1-202ENST00000468421 NWD2Q9ULI1 1742 aa14.21□□□□□ -0.14
MSX1-202ENST00000468421 ZNF521Q96K83 1311 aa14.2□□□□□ -0.14
MSX1-202ENST00000468421 FAM83GA6ND36 823 aa14.2□□□□□ -0.14
MSX1-202ENST00000468421 PNNQ9H307 717 aaKnown RBP14.2□□□□□ -0.14
MSX1-202ENST00000468421 VIRMAQ69YN4 1812 aaKnown RBP14.2□□□□□ -0.14
MSX1-202ENST00000468421 LRP6O75581 1613 aa14.19□□□□□ -0.14
MSX1-202ENST00000468421 TMPOP42166 694 aaKnown RBP14.19□□□□□ -0.14
MSX1-202ENST00000468421 NEUROD2Q15784 382 aa14.19□□□□□ -0.14
MSX1-202ENST00000468421 WNK3Q9BYP7 1800 aa14.19□□□□□ -0.14
MSX1-202ENST00000468421 NUTM2BA6NNL0 878 aaPredicted RBP14.18□□□□□ -0.14
MSX1-202ENST00000468421 NUTM2EB1AL46 878 aaPredicted RBP14.18□□□□□ -0.14
MSX1-202ENST00000468421 NUTM2AQ8IVF1 878 aaPredicted RBP14.18□□□□□ -0.14
MSX1-202ENST00000468421 PARP4Q9UKK3 1724 aaKnown RBP14.18□□□□□ -0.14
MSX1-202ENST00000468421 ADAMTS2O95450 1211 aa14.17□□□□□ -0.14
MSX1-202ENST00000468421 PHF23Q9BUL5 403 aaPredicted RBP14.17□□□□□ -0.14
MSX1-202ENST00000468421 PKD1L3Q7Z443 1732 aa14.17□□□□□ -0.14
MSX1-202ENST00000468421 WDR17Q8IZU2 1322 aa14.16□□□□□ -0.14
MSX1-202ENST00000468421 NEFMP07197 916 aa14.16□□□□□ -0.14
MSX1-202ENST00000468421 CSB-PGBD3P0DP91 1061 aa14.16□□□□□ -0.14
MSX1-202ENST00000468421 NFE2L2Q16236 605 aa14.16□□□□□ -0.14
MSX1-202ENST00000468421 NGEFQ8N5V2 710 aa14.16□□□□□ -0.14
MSX1-202ENST00000468421 NLRP2Q9NX02 1062 aa14.16□□□□□ -0.14
MSX1-202ENST00000468421 MEGF6O75095 1541 aa14.15□□□□□ -0.14
MSX1-202ENST00000468421 SHANK3Q9BYB0 1731 aa14.15□□□□□ -0.14
MSX1-202ENST00000468421 RIPK4P57078 832 aa14.15□□□□□ -0.14
MSX1-202ENST00000468421 NCBP3Q53F19 620 aaKnown RBP14.15□□□□□ -0.14
MSX1-202ENST00000468421 WWC1Q8IX03 1113 aa14.15□□□□□ -0.14
MSX1-202ENST00000468421 CDCA7LQ96GN5 454 aa14.15□□□□□ -0.14
MSX1-202ENST00000468421 BTG4Q9NY30 223 aa14.15□□□□□ -0.14
MSX1-202ENST00000468421 TRIM35Q9UPQ4 493 aa14.15□□□□□ -0.14
MSX1-202ENST00000468421 LRRC37A3O60309 1634 aa14.15□□□□□ -0.14
MSX1-202ENST00000468421 SLIT2O94813 1529 aa14.15□□□□□ -0.14
MSX1-202ENST00000468421 CCDC27Q2M243 656 aa14.14□□□□□ -0.15
MSX1-202ENST00000468421 STRN4Q9NRL3 753 aa14.14□□□□□ -0.15
MSX1-202ENST00000468421 SPATA31A6Q5VVP1 1343 aa14.14□□□□□ -0.15
MSX1-202ENST00000468421 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.13□□□□□ -0.15
MSX1-202ENST00000468421 MTHFSDQ2M296 383 aaKnown RBP14.13□□□□□ -0.15
MSX1-202ENST00000468421 LARP1Q6PKG0 1096 aaKnown RBP14.13□□□□□ -0.15
MSX1-202ENST00000468421 CRB1P82279 1406 aa14.13□□□□□ -0.15
MSX1-202ENST00000468421 PDE3BQ13370 1112 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms