RNA–Protein interactions for RNA: ENST00000466222.6

CAPN3-209, Transcript of calpain 3, humanhuman

TSL 2

Gene CAPN3, Length 1,934 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-209ENST00000466222 MED1Q15648 1581 aaPredicted RBP24.57■■□□□ 1.52
CAPN3-209ENST00000466222 LTV1Q96GA3 475 aaPredicted RBP24.57■■□□□ 1.52
CAPN3-209ENST00000466222 MAP2P11137 1827 aaKnown RBP24.56■■□□□ 1.52
CAPN3-209ENST00000466222 ARHGEF10O15013 1369 aa24.55■■□□□ 1.52
CAPN3-209ENST00000466222 ALS2Q96Q42 1657 aa24.55■■□□□ 1.52
CAPN3-209ENST00000466222 CERKQ8TCT0 537 aa24.55■■□□□ 1.52
CAPN3-209ENST00000466222 RRP7AQ9Y3A4 280 aaKnown RBP24.55■■□□□ 1.52
CAPN3-209ENST00000466222 SLIT3O75094 1523 aa24.55■■□□□ 1.52
CAPN3-209ENST00000466222 PLEKHF1Q96S99 279 aa24.55■■□□□ 1.52
CAPN3-209ENST00000466222 AXIN2Q9Y2T1 843 aa24.55■■□□□ 1.52
CAPN3-209ENST00000466222 AEBP1Q8IUX7 1158 aa24.54■■□□□ 1.52
CAPN3-209ENST00000466222 IP6K1Q92551 441 aa24.54■■□□□ 1.52
CAPN3-209ENST00000466222 RUNDC1Q96C34 613 aa24.54■■□□□ 1.52
CAPN3-209ENST00000466222 USP54Q70EL1 1684 aa24.53■■□□□ 1.52
CAPN3-209ENST00000466222 ROBO1Q9Y6N7 1651 aa24.53■■□□□ 1.52
CAPN3-209ENST00000466222 NEUROD2Q15784 382 aa24.53■■□□□ 1.52
CAPN3-209ENST00000466222 RSPH6AQ9H0K4 717 aa24.53■■□□□ 1.52
CAPN3-209ENST00000466222 TCP11L2Q8N4U5 519 aa24.52■■□□□ 1.52
CAPN3-209ENST00000466222 PRKAR2BP31323 418 aa24.51■■□□□ 1.51
CAPN3-209ENST00000466222 CHRNA2Q15822 529 aa24.51■■□□□ 1.51
CAPN3-209ENST00000466222 PPP4R2Q9NY27 417 aa24.51■■□□□ 1.51
CAPN3-209ENST00000466222 SULT6B1Q6IMI4 303 aa24.51■■□□□ 1.51
CAPN3-209ENST00000466222 EYA1Q99502 592 aa24.5■■□□□ 1.51
CAPN3-209ENST00000466222 FCHSD2O94868 740 aa24.49■■□□□ 1.51
CAPN3-209ENST00000466222 LRRC59Q96AG4 307 aaKnown RBP24.49■■□□□ 1.51
CAPN3-209ENST00000466222 PHACTR3Q96KR7 559 aa24.49■■□□□ 1.51
CAPN3-209ENST00000466222 RBM19Q9Y4C8 960 aaKnown RBP24.49■■□□□ 1.51
CAPN3-209ENST00000466222 KIF24Q5T7B8 1368 aa24.48■■□□□ 1.51
CAPN3-209ENST00000466222 KIAA0232Q92628 1395 aa24.47■■□□□ 1.51
CAPN3-209ENST00000466222 NHSL1Q5SYE7 1610 aa24.47■■□□□ 1.51
CAPN3-209ENST00000466222 USHBP1Q8N6Y0 703 aa24.47■■□□□ 1.51
CAPN3-209ENST00000466222 CDCA7LQ96GN5 454 aa24.47■■□□□ 1.51
CAPN3-209ENST00000466222 RTL1A6NKG5 1358 aa24.46■■□□□ 1.51
CAPN3-209ENST00000466222 HAP1P54257 671 aaPredicted RBP24.46■■□□□ 1.51
CAPN3-209ENST00000466222 NBPF6Q5VWK0 638 aa24.44■■□□□ 1.5
CAPN3-209ENST00000466222 NBPF4Q96M43 638 aa24.44■■□□□ 1.5
CAPN3-209ENST00000466222 ANKRD24Q8TF21 1146 aa24.43■■□□□ 1.5
CAPN3-209ENST00000466222 ANP32EQ9BTT0 268 aa24.43■■□□□ 1.5
CAPN3-209ENST00000466222 IGSF1Q8N6C5 1336 aa24.42■■□□□ 1.5
CAPN3-209ENST00000466222 MAPK8IP3Q9UPT6 1336 aa24.42■■□□□ 1.5
CAPN3-209ENST00000466222 AHDC1Q5TGY3 1603 aaPredicted RBP24.42■■□□□ 1.5
CAPN3-209ENST00000466222 TMPOP42166 694 aaKnown RBP24.41■■□□□ 1.5
CAPN3-209ENST00000466222 ZNF521Q96K83 1311 aa24.41■■□□□ 1.5
CAPN3-209ENST00000466222 IQSEC2Q5JU85 1478 aa24.41■■□□□ 1.5
CAPN3-209ENST00000466222 WWC1Q8IX03 1113 aa24.4■■□□□ 1.5
CAPN3-209ENST00000466222 PRDM11Q9NQV5 511 aa24.4■■□□□ 1.5
CAPN3-209ENST00000466222 SPINK5Q9NQ38 1064 aaPredicted RBP24.39■■□□□ 1.5
CAPN3-209ENST00000466222 PHRF1Q9P1Y6 1649 aaKnown RBP24.38■■□□□ 1.49
CAPN3-209ENST00000466222 CPDO75976 1380 aa24.38■■□□□ 1.49
CAPN3-209ENST00000466222 IRX6P78412 446 aaPredicted RBP24.38■■□□□ 1.49
CAPN3-209ENST00000466222 PNNQ9H307 717 aaKnown RBP24.38■■□□□ 1.49
CAPN3-209ENST00000466222 FAM83GA6ND36 823 aa24.37■■□□□ 1.49
CAPN3-209ENST00000466222 ERBB3P21860 1342 aa24.37■■□□□ 1.49
CAPN3-209ENST00000466222 RIPK4P57078 832 aa24.37■■□□□ 1.49
CAPN3-209ENST00000466222 LTN1O94822 1766 aa24.36■■□□□ 1.49
CAPN3-209ENST00000466222 TRIM35Q9UPQ4 493 aa24.36■■□□□ 1.49
CAPN3-209ENST00000466222 PHF23Q9BUL5 403 aaPredicted RBP24.35■■□□□ 1.49
CAPN3-209ENST00000466222 KDRP35968 1356 aa24.35■■□□□ 1.49
CAPN3-209ENST00000466222 CRYBG1Q9Y4K1 1723 aa24.34■■□□□ 1.49
CAPN3-209ENST00000466222 NEFMP07197 916 aa24.33■■□□□ 1.49
CAPN3-209ENST00000466222 NFE2L2Q16236 605 aa24.33■■□□□ 1.49
CAPN3-209ENST00000466222 RNF123Q5XPI4 1314 aa24.33■■□□□ 1.48
CAPN3-209ENST00000466222 COL16A1Q07092 1604 aaPredicted RBP24.33■■□□□ 1.48
CAPN3-209ENST00000466222 NUTM2BA6NNL0 878 aaPredicted RBP24.32■■□□□ 1.48
CAPN3-209ENST00000466222 NUTM2EB1AL46 878 aaPredicted RBP24.32■■□□□ 1.48
CAPN3-209ENST00000466222 RGPD1P0DJD0 1748 aa24.32■■□□□ 1.48
CAPN3-209ENST00000466222 GOLGA2Q08379 1002 aa24.32■■□□□ 1.48
CAPN3-209ENST00000466222 NUTM2AQ8IVF1 878 aaPredicted RBP24.32■■□□□ 1.48
CAPN3-209ENST00000466222 NLRP2Q9NX02 1062 aa24.32■■□□□ 1.48
CAPN3-209ENST00000466222 ADAMTS2O95450 1211 aa24.31■■□□□ 1.48
CAPN3-209ENST00000466222 CSB-PGBD3P0DP91 1061 aa24.31■■□□□ 1.48
CAPN3-209ENST00000466222 MTHFSDQ2M296 383 aaKnown RBP24.31■■□□□ 1.48
CAPN3-209ENST00000466222 THUMPD2Q9BTF0 503 aaKnown RBP24.31■■□□□ 1.48
CAPN3-209ENST00000466222 FANCIQ9NVI1 1328 aa24.3■■□□□ 1.48
CAPN3-209ENST00000466222 PDE3BQ13370 1112 aa24.3■■□□□ 1.48
CAPN3-209ENST00000466222 CCDC27Q2M243 656 aa24.3■■□□□ 1.48
CAPN3-209ENST00000466222 PHLPP1O60346 1717 aa24.3■■□□□ 1.48
CAPN3-209ENST00000466222 DCTN1Q14203 1278 aa24.29■■□□□ 1.48
CAPN3-209ENST00000466222 NGEFQ8N5V2 710 aa24.29■■□□□ 1.48
CAPN3-209ENST00000466222 SLFN5Q08AF3 891 aa24.28■■□□□ 1.48
CAPN3-209ENST00000466222 STRN4Q9NRL3 753 aa24.28■■□□□ 1.48
CAPN3-209ENST00000466222 CAMTA1Q9Y6Y1 1673 aa24.28■■□□□ 1.48
CAPN3-209ENST00000466222 HSPA1LP34931 641 aa24.27■■□□□ 1.48
CAPN3-209ENST00000466222 DUSP27Q5VZP5 1158 aa24.27■■□□□ 1.48
CAPN3-209ENST00000466222 BTG4Q9NY30 223 aa24.26■■□□□ 1.47
CAPN3-209ENST00000466222 COL18A1P39060 1754 aa24.25■■□□□ 1.47
CAPN3-209ENST00000466222 LARP1Q6PKG0 1096 aaKnown RBP24.24■■□□□ 1.47
CAPN3-209ENST00000466222 NCBP3Q53F19 620 aaKnown RBP24.23■■□□□ 1.47
CAPN3-209ENST00000466222 WDR63Q8IWG1 891 aa24.23■■□□□ 1.47
CAPN3-209ENST00000466222 MCM10Q7L590 875 aa24.23■■□□□ 1.47
CAPN3-209ENST00000466222 TRMT2AQ8IZ69 625 aaKnown RBP24.23■■□□□ 1.47
CAPN3-209ENST00000466222 ABCA3Q99758 1704 aa24.23■■□□□ 1.47
CAPN3-209ENST00000466222 EVA1CP58658 441 aa24.22■■□□□ 1.47
CAPN3-209ENST00000466222 TOM1L2Q6ZVM7 507 aa24.22■■□□□ 1.47
CAPN3-209ENST00000466222 WDR17Q8IZU2 1322 aa24.22■■□□□ 1.47
CAPN3-209ENST00000466222 COL5A2P05997 1499 aaPredicted RBP24.22■■□□□ 1.47
CAPN3-209ENST00000466222 E9PSI1 815 aa24.22■■□□□ 1.47
CAPN3-209ENST00000466222 NCAPD2Q15021 1401 aa24.2■■□□□ 1.46
CAPN3-209ENST00000466222 COL22A1Q8NFW1 1626 aaPredicted RBP24.2■■□□□ 1.46
CAPN3-209ENST00000466222 TSR2Q969E8 191 aaKnown RBP24.2■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms