RNA–Protein interactions for RNA: ENST00000465903.5

SMC4-206, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 849 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-206ENST00000465903 COG3Q96JB2 828 aa35.9■■■■□ 3.34
SMC4-206ENST00000465903 NSD3Q9BZ95 1437 aa35.89■■■■□ 3.34
SMC4-206ENST00000465903 SPATA31A1Q5TZJ5 1347 aa35.88■■■■□ 3.33
SMC4-206ENST00000465903 LARP1Q6PKG0 1096 aaKnown RBP35.88■■■■□ 3.33
SMC4-206ENST00000465903 GGNBP2Q9H3C7 697 aa35.88■■■■□ 3.33
SMC4-206ENST00000465903 KIF7Q2M1P5 1343 aa35.85■■■■□ 3.33
SMC4-206ENST00000465903 SEPT12Q8IYM1 358 aa35.85■■■■□ 3.33
SMC4-206ENST00000465903 FAM98CQ17RN3 349 aaKnown RBP35.84■■■■□ 3.33
SMC4-206ENST00000465903 PANK3Q9H999 370 aa35.83■■■■□ 3.33
SMC4-206ENST00000465903 ABCC6O95255 1503 aa35.83■■■■□ 3.33
SMC4-206ENST00000465903 FBLN1P23142 703 aa35.82■■■■□ 3.32
SMC4-206ENST00000465903 THSD7AQ9UPZ6 1657 aa35.8■■■■□ 3.32
SMC4-206ENST00000465903 USP35Q9P2H5 1018 aa35.78■■■■□ 3.32
SMC4-206ENST00000465903 CRB1P82279 1406 aa35.77■■■■□ 3.32
SMC4-206ENST00000465903 UPF1Q92900 1129 aaKnown RBP eCLIP35.77■■■■□ 3.32
SMC4-206ENST00000465903 WDR17Q8IZU2 1322 aa35.77■■■■□ 3.32
SMC4-206ENST00000465903 BARGINQ6ZT62 677 aa35.75■■■■□ 3.31
SMC4-206ENST00000465903 TCP11L2Q8N4U5 519 aa35.74■■■■□ 3.31
SMC4-206ENST00000465903 CGNL1Q0VF96 1302 aa35.73■■■■□ 3.31
SMC4-206ENST00000465903 MAP3K19Q56UN5 1328 aa35.73■■■■□ 3.31
SMC4-206ENST00000465903 TOM1L2Q6ZVM7 507 aa35.72■■■■□ 3.31
SMC4-206ENST00000465903 IP6K1Q92551 441 aa35.72■■■■□ 3.31
SMC4-206ENST00000465903 CCDC7Q96M83 1385 aa35.72■■■■□ 3.31
SMC4-206ENST00000465903 ANKRD26Q9UPS8 1709 aa35.71■■■■□ 3.31
SMC4-206ENST00000465903 A0A0G2JS52 829 aa35.71■■■■□ 3.31
SMC4-206ENST00000465903 MYT1Q01538 1121 aa35.71■■■■□ 3.31
SMC4-206ENST00000465903 THRAP3Q9Y2W1 955 aaKnown RBP35.71■■■■□ 3.31
SMC4-206ENST00000465903 WASHC2AQ641Q2 1341 aa35.7■■■■□ 3.31
SMC4-206ENST00000465903 KRT27Q7Z3Y8 459 aa35.68■■■■□ 3.3
SMC4-206ENST00000465903 MAP2P11137 1827 aaKnown RBP35.67■■■■□ 3.3
SMC4-206ENST00000465903 ERBB3P21860 1342 aa35.67■■■■□ 3.3
SMC4-206ENST00000465903 CSB-PGBD3P0DP91 1061 aa35.67■■■■□ 3.3
SMC4-206ENST00000465903 RRS1Q15050 365 aaKnown RBP35.67■■■■□ 3.3
SMC4-206ENST00000465903 WNK3Q9BYP7 1800 aa35.67■■■■□ 3.3
SMC4-206ENST00000465903 BLMP54132 1417 aaPredicted RBP35.66■■■■□ 3.3
SMC4-206ENST00000465903 HOXC9P31274 260 aa35.66■■■■□ 3.3
SMC4-206ENST00000465903 CARD10Q9BWT7 1032 aa35.66■■■■□ 3.3
SMC4-206ENST00000465903 ANKRD24Q8TF21 1146 aa35.64■■■■□ 3.3
SMC4-206ENST00000465903 PEAK1Q9H792 1746 aa35.63■■■■□ 3.29
SMC4-206ENST00000465903 PARP4Q9UKK3 1724 aaKnown RBP35.63■■■■□ 3.29
SMC4-206ENST00000465903 EP400Q96L91 3159 aa35.63■■■■□ 3.29
SMC4-206ENST00000465903 AMPHP49418 695 aa35.63■■■■□ 3.29
SMC4-206ENST00000465903 RGPD2P0DJD1 1756 aa35.6■■■■□ 3.29
SMC4-206ENST00000465903 RTL1A6NKG5 1358 aa35.6■■■■□ 3.29
SMC4-206ENST00000465903 PER1O15534 1290 aaPredicted RBP35.59■■■■□ 3.29
SMC4-206ENST00000465903 KNSTRNQ9Y448 316 aa35.58■■■■□ 3.29
SMC4-206ENST00000465903 FAM208AQ9UK61 1670 aaKnown RBP35.57■■■■□ 3.28
SMC4-206ENST00000465903 FAM182BQ5T319 152 aa35.57■■■■□ 3.28
SMC4-206ENST00000465903 LTV1Q96GA3 475 aaPredicted RBP35.57■■■■□ 3.28
SMC4-206ENST00000465903 NSD2O96028 1365 aa35.56■■■■□ 3.28
SMC4-206ENST00000465903 NLRP2Q9NX02 1062 aa35.56■■■■□ 3.28
SMC4-206ENST00000465903 EMILIN1Q9Y6C2 1016 aa35.55■■■■□ 3.28
SMC4-206ENST00000465903 DISP2A7MBM2 1401 aa35.55■■■■□ 3.28
SMC4-206ENST00000465903 KIF24Q5T7B8 1368 aa35.54■■■■□ 3.28
SMC4-206ENST00000465903 AMER1Q5JTC6 1135 aaPredicted RBP35.54■■■■□ 3.28
SMC4-206ENST00000465903 HSP90AB2PQ58FF8 381 aa35.53■■■■□ 3.28
SMC4-206ENST00000465903 LRRC37A3O60309 1634 aa35.53■■■■□ 3.28
SMC4-206ENST00000465903 FLT4P35916 1363 aa35.51■■■■□ 3.28
SMC4-206ENST00000465903 POLKQ9UBT6 870 aa35.51■■■■□ 3.28
SMC4-206ENST00000465903 CDCA7Q9BWT1 371 aaPredicted RBP35.5■■■■□ 3.27
SMC4-206ENST00000465903 INSRP06213 1382 aa35.5■■■■□ 3.27
SMC4-206ENST00000465903 TNNT2P45379 298 aaPredicted RBP35.49■■■■□ 3.27
SMC4-206ENST00000465903 PDE3BQ13370 1112 aa35.49■■■■□ 3.27
SMC4-206ENST00000465903 CCDC125Q86Z20 511 aa35.47■■■■□ 3.27
SMC4-206ENST00000465903 DDB1Q16531 1140 aa35.46■■■■□ 3.27
SMC4-206ENST00000465903 MORC1Q86VD1 984 aa35.46■■■■□ 3.27
SMC4-206ENST00000465903 PPM1GO15355 546 aaPredicted RBP35.44■■■■□ 3.26
SMC4-206ENST00000465903 NBPF6Q5VWK0 638 aa35.43■■■■□ 3.26
SMC4-206ENST00000465903 NBPF4Q96M43 638 aa35.43■■■■□ 3.26
SMC4-206ENST00000465903 IL2RBP14784 551 aa35.42■■■■□ 3.26
SMC4-206ENST00000465903 FAM196AQ6ZSG2 479 aa35.41■■■■□ 3.26
SMC4-206ENST00000465903 ZEB1P37275 1124 aaPredicted RBP35.4■■■■□ 3.26
SMC4-206ENST00000465903 EXOC5O00471 708 aa35.39■■■■□ 3.26
SMC4-206ENST00000465903 RGPD1P0DJD0 1748 aa35.38■■■■□ 3.25
SMC4-206ENST00000465903 SBF2Q86WG5 1849 aa35.38■■■■□ 3.25
SMC4-206ENST00000465903 SMG6Q86US8 1419 aaKnown RBP35.38■■■■□ 3.25
SMC4-206ENST00000465903 MARCH10Q8NA82 808 aaPredicted RBP35.37■■■■□ 3.25
SMC4-206ENST00000465903 NPC1L1Q9UHC9 1359 aa35.37■■■■□ 3.25
SMC4-206ENST00000465903 CC2D1BQ5T0F9 858 aaKnown RBP35.36■■■■□ 3.25
SMC4-206ENST00000465903 TNS2Q63HR2 1409 aa35.35■■■■□ 3.25
SMC4-206ENST00000465903 USHBP1Q8N6Y0 703 aa35.35■■■■□ 3.25
SMC4-206ENST00000465903 TNS1Q9HBL0 1735 aaKnown RBP35.35■■■■□ 3.25
SMC4-206ENST00000465903 OVOS2A0A0G2JMS6 1433 aa35.32■■■■□ 3.25
SMC4-206ENST00000465903 TRIM37O94972 964 aa35.31■■■■□ 3.24
SMC4-206ENST00000465903 DEFB132Q7Z7B7 95 aa35.31■■■■□ 3.24
SMC4-206ENST00000465903 SF3B2Q13435 895 aaKnown RBP35.3■■■■□ 3.24
SMC4-206ENST00000465903 MEGF6O75095 1541 aa35.3■■■■□ 3.24
SMC4-206ENST00000465903 EIF4A2Q14240 407 aaKnown RBP35.29■■■■□ 3.24
SMC4-206ENST00000465903 NCAPD2Q15021 1401 aa35.28■■■■□ 3.24
SMC4-206ENST00000465903 SHANK3Q9BYB0 1731 aa35.27■■■■□ 3.24
SMC4-206ENST00000465903 BCL9O00512 1426 aa35.27■■■■□ 3.24
SMC4-206ENST00000465903 EYA1Q99502 592 aa35.27■■■■□ 3.24
SMC4-206ENST00000465903 CNGB1Q14028 1251 aaPredicted RBP35.25■■■■□ 3.23
SMC4-206ENST00000465903 KAT6BQ8WYB5 2073 aa35.24■■■■□ 3.23
SMC4-206ENST00000465903 BAG6P46379 1132 aa35.21■■■■□ 3.23
SMC4-206ENST00000465903 MTHFSP49914 203 aa35.21■■■■□ 3.23
SMC4-206ENST00000465903 ZCRB1Q8TBF4 217 aaKnown RBP35.2■■■■□ 3.23
SMC4-206ENST00000465903 RAPGEF4Q8WZA2 1011 aa35.2■■■■□ 3.23
SMC4-206ENST00000465903 TATP17735 454 aaPredicted RBP35.18■■■■□ 3.22
SMC4-206ENST00000465903 EN1Q05925 392 aaPredicted RBP35.18■■■■□ 3.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms