RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 USP54Q70EL1 1684 aa18.14■□□□□ 0.49
COL28A1-206ENST00000465339 ONECUT3O60422 494 aaPredicted RBP18.13■□□□□ 0.49
COL28A1-206ENST00000465339 ABCB7O75027 752 aa18.13■□□□□ 0.49
COL28A1-206ENST00000465339 NME9Q86XW9 330 aa18.13■□□□□ 0.49
COL28A1-206ENST00000465339 LMO7Q8WWI1 1683 aa18.12■□□□□ 0.49
COL28A1-206ENST00000465339 SPATA31A5Q5VU36 1347 aa18.12■□□□□ 0.49
COL28A1-206ENST00000465339 SPATA31A7Q8IWB4 1347 aa18.12■□□□□ 0.49
COL28A1-206ENST00000465339 AATKQ6ZMQ8 1374 aa18.12■□□□□ 0.49
COL28A1-206ENST00000465339 CAMTA1Q9Y6Y1 1673 aa18.12■□□□□ 0.49
COL28A1-206ENST00000465339 ZRANB1Q9UGI0 708 aa18.11■□□□□ 0.49
COL28A1-206ENST00000465339 ZBTB7CA1YPR0 619 aa18.1■□□□□ 0.49
COL28A1-206ENST00000465339 ARHGEF25Q86VW2 580 aa18.1■□□□□ 0.49
COL28A1-206ENST00000465339 STRN4Q9NRL3 753 aa18.1■□□□□ 0.49
COL28A1-206ENST00000465339 COL18A1P39060 1754 aa18.09■□□□□ 0.49
COL28A1-206ENST00000465339 MYOM1P52179 1685 aa18.09■□□□□ 0.49
COL28A1-206ENST00000465339 SPATA31A1Q5TZJ5 1347 aa18.08■□□□□ 0.49
COL28A1-206ENST00000465339 SOX12O15370 315 aa18.08■□□□□ 0.48
COL28A1-206ENST00000465339 SEPT12Q8IYM1 358 aa18.08■□□□□ 0.48
COL28A1-206ENST00000465339 NFAT5O94916 1531 aa18.08■□□□□ 0.48
COL28A1-206ENST00000465339 BRWD3Q6RI45 1802 aa18.07■□□□□ 0.48
COL28A1-206ENST00000465339 FAM98CQ17RN3 349 aaKnown RBP18.07■□□□□ 0.48
COL28A1-206ENST00000465339 UPF1Q92900 1129 aaKnown RBP eCLIP18.07■□□□□ 0.48
COL28A1-206ENST00000465339 COG3Q96JB2 828 aa18.07■□□□□ 0.48
COL28A1-206ENST00000465339 OVOS2A0A0J9YW53 1432 aa18.06■□□□□ 0.48
COL28A1-206ENST00000465339 OVOS2Q6IE36 1432 aa18.06■□□□□ 0.48
COL28A1-206ENST00000465339 COL5A2P05997 1499 aaPredicted RBP18.06■□□□□ 0.48
COL28A1-206ENST00000465339 RGPD5Q99666 1765 aa18.05■□□□□ 0.48
COL28A1-206ENST00000465339 LARP1Q6PKG0 1096 aaKnown RBP18.05■□□□□ 0.48
COL28A1-206ENST00000465339 POLR3GLQ9BT43 218 aa18.05■□□□□ 0.48
COL28A1-206ENST00000465339 LTN1O94822 1766 aa18.04■□□□□ 0.48
COL28A1-206ENST00000465339 ABCC6O95255 1503 aa18.04■□□□□ 0.48
COL28A1-206ENST00000465339 A0A0G2JS52 829 aa18.04■□□□□ 0.48
COL28A1-206ENST00000465339 FYB1O15117 783 aa18.04■□□□□ 0.48
COL28A1-206ENST00000465339 MYT1Q01538 1121 aa18.04■□□□□ 0.48
COL28A1-206ENST00000465339 AXIN2Q9Y2T1 843 aa18.04■□□□□ 0.48
COL28A1-206ENST00000465339 BARGINQ6ZT62 677 aa18.03■□□□□ 0.48
COL28A1-206ENST00000465339 CARD14Q9BXL6 1004 aa18.03■□□□□ 0.48
COL28A1-206ENST00000465339 THRAP3Q9Y2W1 955 aaKnown RBP18.03■□□□□ 0.48
COL28A1-206ENST00000465339 KIF20BQ96Q89 1820 aa18.02■□□□□ 0.48
COL28A1-206ENST00000465339 CRB1P82279 1406 aa18.02■□□□□ 0.48
COL28A1-206ENST00000465339 KRT27Q7Z3Y8 459 aa18.02■□□□□ 0.48
COL28A1-206ENST00000465339 TCP11L2Q8N4U5 519 aa18.02■□□□□ 0.48
COL28A1-206ENST00000465339 USP35Q9P2H5 1018 aa18.02■□□□□ 0.48
COL28A1-206ENST00000465339 WDR17Q8IZU2 1322 aa18.01■□□□□ 0.47
COL28A1-206ENST00000465339 THSD7AQ9UPZ6 1657 aa18.01■□□□□ 0.47
COL28A1-206ENST00000465339 C11orf95C9JLR9 678 aaPredicted RBP18■□□□□ 0.47
COL28A1-206ENST00000465339 TOM1L2Q6ZVM7 507 aa18■□□□□ 0.47
COL28A1-206ENST00000465339 GGNBP2Q9H3C7 697 aa18■□□□□ 0.47
COL28A1-206ENST00000465339 NSD3Q9BZ95 1437 aa17.99■□□□□ 0.47
COL28A1-206ENST00000465339 POLA2Q14181 598 aa17.99■□□□□ 0.47
COL28A1-206ENST00000465339 CCDC125Q86Z20 511 aa17.99■□□□□ 0.47
COL28A1-206ENST00000465339 CSB-PGBD3P0DP91 1061 aa17.98■□□□□ 0.47
COL28A1-206ENST00000465339 CGNL1Q0VF96 1302 aa17.98■□□□□ 0.47
COL28A1-206ENST00000465339 IP6K1Q92551 441 aa17.97■□□□□ 0.47
COL28A1-206ENST00000465339 CARD10Q9BWT7 1032 aa17.97■□□□□ 0.47
COL28A1-206ENST00000465339 PANK3Q9H999 370 aa17.96■□□□□ 0.47
COL28A1-206ENST00000465339 BLMP54132 1417 aaPredicted RBP17.96■□□□□ 0.47
COL28A1-206ENST00000465339 AMPHP49418 695 aa17.95■□□□□ 0.46
COL28A1-206ENST00000465339 CDCA7Q9BWT1 371 aaPredicted RBP17.95■□□□□ 0.46
COL28A1-206ENST00000465339 ERBB3P21860 1342 aa17.95■□□□□ 0.46
COL28A1-206ENST00000465339 MAP3K19Q56UN5 1328 aa17.95■□□□□ 0.46
COL28A1-206ENST00000465339 PDE3BQ13370 1112 aa17.94■□□□□ 0.46
COL28A1-206ENST00000465339 PARP4Q9UKK3 1724 aaKnown RBP17.94■□□□□ 0.46
COL28A1-206ENST00000465339 KIF7Q2M1P5 1343 aa17.94■□□□□ 0.46
COL28A1-206ENST00000465339 FBLN1P23142 703 aa17.93■□□□□ 0.46
COL28A1-206ENST00000465339 ANKRD24Q8TF21 1146 aa17.93■□□□□ 0.46
COL28A1-206ENST00000465339 CCDC7Q96M83 1385 aa17.92■□□□□ 0.46
COL28A1-206ENST00000465339 HOXC9P31274 260 aa17.92■□□□□ 0.46
COL28A1-206ENST00000465339 WNK3Q9BYP7 1800 aa17.91■□□□□ 0.46
COL28A1-206ENST00000465339 RRS1Q15050 365 aaKnown RBP17.91■□□□□ 0.46
COL28A1-206ENST00000465339 NLRP2Q9NX02 1062 aa17.91■□□□□ 0.46
COL28A1-206ENST00000465339 ANKRD26Q9UPS8 1709 aa17.91■□□□□ 0.46
COL28A1-206ENST00000465339 RTL1A6NKG5 1358 aa17.91■□□□□ 0.46
COL28A1-206ENST00000465339 KIF24Q5T7B8 1368 aa17.91■□□□□ 0.46
COL28A1-206ENST00000465339 FAM208AQ9UK61 1670 aaKnown RBP17.9■□□□□ 0.46
COL28A1-206ENST00000465339 FAM196AQ6ZSG2 479 aa17.9■□□□□ 0.46
COL28A1-206ENST00000465339 MAP2P11137 1827 aaKnown RBP17.89■□□□□ 0.45
COL28A1-206ENST00000465339 EP400Q96L91 3159 aa17.89■□□□□ 0.45
COL28A1-206ENST00000465339 SF3B2Q13435 895 aaKnown RBP17.89■□□□□ 0.45
COL28A1-206ENST00000465339 DDB1Q16531 1140 aa17.89■□□□□ 0.45
COL28A1-206ENST00000465339 KNSTRNQ9Y448 316 aa17.89■□□□□ 0.45
COL28A1-206ENST00000465339 FAM182BQ5T319 152 aa17.88■□□□□ 0.45
COL28A1-206ENST00000465339 NSD2O96028 1365 aa17.88■□□□□ 0.45
COL28A1-206ENST00000465339 LTV1Q96GA3 475 aaPredicted RBP17.87■□□□□ 0.45
COL28A1-206ENST00000465339 EXOC5O00471 708 aa17.86■□□□□ 0.45
COL28A1-206ENST00000465339 FLT4P35916 1363 aa17.86■□□□□ 0.45
COL28A1-206ENST00000465339 DISP2A7MBM2 1401 aa17.86■□□□□ 0.45
COL28A1-206ENST00000465339 LRRC37A3O60309 1634 aa17.86■□□□□ 0.45
COL28A1-206ENST00000465339 INSRP06213 1382 aa17.85■□□□□ 0.45
COL28A1-206ENST00000465339 RGPD1P0DJD0 1748 aa17.85■□□□□ 0.45
COL28A1-206ENST00000465339 SMG6Q86US8 1419 aaKnown RBP17.84■□□□□ 0.45
COL28A1-206ENST00000465339 WASHC2AQ641Q2 1341 aa17.84■□□□□ 0.45
COL28A1-206ENST00000465339 IL2RBP14784 551 aa17.84■□□□□ 0.45
COL28A1-206ENST00000465339 RGPD2P0DJD1 1756 aa17.84■□□□□ 0.45
COL28A1-206ENST00000465339 PEAK1Q9H792 1746 aa17.84■□□□□ 0.45
COL28A1-206ENST00000465339 HSP90AB2PQ58FF8 381 aa17.83■□□□□ 0.44
COL28A1-206ENST00000465339 EMILIN1Q9Y6C2 1016 aa17.83■□□□□ 0.44
COL28A1-206ENST00000465339 PPM1GO15355 546 aaPredicted RBP17.82■□□□□ 0.44
COL28A1-206ENST00000465339 PER1O15534 1290 aaPredicted RBP17.82■□□□□ 0.44
COL28A1-206ENST00000465339 MORC1Q86VD1 984 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms