RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 CDK12Q9NYV4 1490 aaPredicted RBP19.91■□□□□ 0.78
SQSTM1-205ENST00000464493 LTN1O94822 1766 aa19.9■□□□□ 0.78
SQSTM1-205ENST00000464493 SPATA31A5Q5VU36 1347 aa19.9■□□□□ 0.78
SQSTM1-205ENST00000464493 SPATA31A7Q8IWB4 1347 aa19.9■□□□□ 0.78
SQSTM1-205ENST00000464493 COL5A2P05997 1499 aaPredicted RBP19.9■□□□□ 0.78
SQSTM1-205ENST00000464493 PER1O15534 1290 aaPredicted RBP19.89■□□□□ 0.77
SQSTM1-205ENST00000464493 GLI3P10071 1580 aa19.89■□□□□ 0.77
SQSTM1-205ENST00000464493 LARP1Q6PKG0 1096 aaKnown RBP19.89■□□□□ 0.77
SQSTM1-205ENST00000464493 RGPD5Q99666 1765 aa19.88■□□□□ 0.77
SQSTM1-205ENST00000464493 ABCC6O95255 1503 aa19.88■□□□□ 0.77
SQSTM1-205ENST00000464493 MAP3K19Q56UN5 1328 aa19.88■□□□□ 0.77
SQSTM1-205ENST00000464493 NSD2O96028 1365 aa19.87■□□□□ 0.77
SQSTM1-205ENST00000464493 SPATA31A1Q5TZJ5 1347 aa19.87■□□□□ 0.77
SQSTM1-205ENST00000464493 RRS1Q15050 365 aaKnown RBP19.87■□□□□ 0.77
SQSTM1-205ENST00000464493 IP6K1Q92551 441 aa19.87■□□□□ 0.77
SQSTM1-205ENST00000464493 ONECUT3O60422 494 aaPredicted RBP19.86■□□□□ 0.77
SQSTM1-205ENST00000464493 AMPHP49418 695 aa19.86■□□□□ 0.77
SQSTM1-205ENST00000464493 AMER1Q5JTC6 1135 aaPredicted RBP19.86■□□□□ 0.77
SQSTM1-205ENST00000464493 USP35Q9P2H5 1018 aa19.86■□□□□ 0.77
SQSTM1-205ENST00000464493 RGS12O14924 1447 aa19.85■□□□□ 0.77
SQSTM1-205ENST00000464493 WDR17Q8IZU2 1322 aa19.85■□□□□ 0.77
SQSTM1-205ENST00000464493 CSB-PGBD3P0DP91 1061 aa19.85■□□□□ 0.77
SQSTM1-205ENST00000464493 FAM98CQ17RN3 349 aaKnown RBP19.85■□□□□ 0.77
SQSTM1-205ENST00000464493 TOM1L2Q6ZVM7 507 aa19.85■□□□□ 0.77
SQSTM1-205ENST00000464493 ANKRD26Q9UPS8 1709 aa19.85■□□□□ 0.77
SQSTM1-205ENST00000464493 HOXC9P31274 260 aa19.84■□□□□ 0.77
SQSTM1-205ENST00000464493 CRB1P82279 1406 aa19.84■□□□□ 0.77
SQSTM1-205ENST00000464493 TNNT2P45379 298 aaPredicted RBP19.83■□□□□ 0.77
SQSTM1-205ENST00000464493 MORC1Q86VD1 984 aa19.83■□□□□ 0.77
SQSTM1-205ENST00000464493 SEPT12Q8IYM1 358 aa19.83■□□□□ 0.77
SQSTM1-205ENST00000464493 BLMP54132 1417 aaPredicted RBP19.83■□□□□ 0.76
SQSTM1-205ENST00000464493 TCP11L2Q8N4U5 519 aa19.82■□□□□ 0.76
SQSTM1-205ENST00000464493 ANKRD24Q8TF21 1146 aa19.82■□□□□ 0.76
SQSTM1-205ENST00000464493 THRAP3Q9Y2W1 955 aaKnown RBP19.82■□□□□ 0.76
SQSTM1-205ENST00000464493 ERBB3P21860 1342 aa19.81■□□□□ 0.76
SQSTM1-205ENST00000464493 BARGINQ6ZT62 677 aa19.81■□□□□ 0.76
SQSTM1-205ENST00000464493 RTL1A6NKG5 1358 aa19.81■□□□□ 0.76
SQSTM1-205ENST00000464493 MAP2P11137 1827 aaKnown RBP19.81■□□□□ 0.76
SQSTM1-205ENST00000464493 A0A0G2JS52 829 aa19.8■□□□□ 0.76
SQSTM1-205ENST00000464493 SOCS7O14512 581 aa19.8■□□□□ 0.76
SQSTM1-205ENST00000464493 MYT1Q01538 1121 aa19.8■□□□□ 0.76
SQSTM1-205ENST00000464493 CC2D1BQ5T0F9 858 aaKnown RBP19.8■□□□□ 0.76
SQSTM1-205ENST00000464493 LTV1Q96GA3 475 aaPredicted RBP19.8■□□□□ 0.76
SQSTM1-205ENST00000464493 CARD10Q9BWT7 1032 aa19.8■□□□□ 0.76
SQSTM1-205ENST00000464493 EMILIN1Q9Y6C2 1016 aa19.8■□□□□ 0.76
SQSTM1-205ENST00000464493 KIF24Q5T7B8 1368 aa19.8■□□□□ 0.76
SQSTM1-205ENST00000464493 PPM1GO15355 546 aaPredicted RBP19.79■□□□□ 0.76
SQSTM1-205ENST00000464493 POLKQ9UBT6 870 aa19.79■□□□□ 0.76
SQSTM1-205ENST00000464493 HSP90AB2PQ58FF8 381 aa19.78■□□□□ 0.76
SQSTM1-205ENST00000464493 NLRP2Q9NX02 1062 aa19.78■□□□□ 0.76
SQSTM1-205ENST00000464493 FLT4P35916 1363 aa19.78■□□□□ 0.76
SQSTM1-205ENST00000464493 NPC1L1Q9UHC9 1359 aa19.78■□□□□ 0.76
SQSTM1-205ENST00000464493 PEAK1Q9H792 1746 aa19.76■□□□□ 0.75
SQSTM1-205ENST00000464493 INSRP06213 1382 aa19.76■□□□□ 0.75
SQSTM1-205ENST00000464493 CNGB1Q14028 1251 aaPredicted RBP19.76■□□□□ 0.75
SQSTM1-205ENST00000464493 BRWD3Q6RI45 1802 aa19.75■□□□□ 0.75
SQSTM1-205ENST00000464493 KRT27Q7Z3Y8 459 aa19.74■□□□□ 0.75
SQSTM1-205ENST00000464493 THSD7AQ9UPZ6 1657 aa19.74■□□□□ 0.75
SQSTM1-205ENST00000464493 DDX10Q13206 875 aaKnown RBP19.73■□□□□ 0.75
SQSTM1-205ENST00000464493 SMG6Q86US8 1419 aaKnown RBP19.72■□□□□ 0.75
SQSTM1-205ENST00000464493 CDCA7Q9BWT1 371 aaPredicted RBP19.72■□□□□ 0.75
SQSTM1-205ENST00000464493 FAM208AQ9UK61 1670 aaKnown RBP19.71■□□□□ 0.75
SQSTM1-205ENST00000464493 PDE3BQ13370 1112 aa19.7■□□□□ 0.74
SQSTM1-205ENST00000464493 NBPF6Q5VWK0 638 aa19.7■□□□□ 0.74
SQSTM1-205ENST00000464493 NBPF4Q96M43 638 aa19.7■□□□□ 0.74
SQSTM1-205ENST00000464493 RGPD2P0DJD1 1756 aa19.69■□□□□ 0.74
SQSTM1-205ENST00000464493 ZNF316A6NFI3 1004 aaPredicted RBP19.68■□□□□ 0.74
SQSTM1-205ENST00000464493 IL2RBP14784 551 aa19.68■□□□□ 0.74
SQSTM1-205ENST00000464493 DDB1Q16531 1140 aa19.68■□□□□ 0.74
SQSTM1-205ENST00000464493 EP400Q96L91 3159 aa19.68■□□□□ 0.74
SQSTM1-205ENST00000464493 PARP4Q9UKK3 1724 aaKnown RBP19.68■□□□□ 0.74
SQSTM1-205ENST00000464493 DISP2A7MBM2 1401 aa19.68■□□□□ 0.74
SQSTM1-205ENST00000464493 WNK3Q9BYP7 1800 aa19.67■□□□□ 0.74
SQSTM1-205ENST00000464493 MTHFSP49914 203 aa19.67■□□□□ 0.74
SQSTM1-205ENST00000464493 EXOC5O00471 708 aa19.66■□□□□ 0.74
SQSTM1-205ENST00000464493 EIF4A2Q14240 407 aaKnown RBP19.66■□□□□ 0.74
SQSTM1-205ENST00000464493 UPF1Q92900 1129 aaKnown RBP eCLIP19.66■□□□□ 0.74
SQSTM1-205ENST00000464493 FAM182BQ5T319 152 aa19.65■□□□□ 0.74
SQSTM1-205ENST00000464493 USHBP1Q8N6Y0 703 aa19.65■□□□□ 0.74
SQSTM1-205ENST00000464493 EYA1Q99502 592 aa19.64■□□□□ 0.73
SQSTM1-205ENST00000464493 LRRC37A3O60309 1634 aa19.63■□□□□ 0.73
SQSTM1-205ENST00000464493 FAM196AQ6ZSG2 479 aa19.62■□□□□ 0.73
SQSTM1-205ENST00000464493 RAPGEF4Q8WZA2 1011 aa19.61■□□□□ 0.73
SQSTM1-205ENST00000464493 PPP2R1AP30153 589 aa19.6■□□□□ 0.73
SQSTM1-205ENST00000464493 CCDC125Q86Z20 511 aa19.6■□□□□ 0.73
SQSTM1-205ENST00000464493 MARCH10Q8NA82 808 aaPredicted RBP19.6■□□□□ 0.73
SQSTM1-205ENST00000464493 IL13P35225 146 aa19.59■□□□□ 0.73
SQSTM1-205ENST00000464493 TNS2Q63HR2 1409 aa19.59■□□□□ 0.73
SQSTM1-205ENST00000464493 MEGF6O75095 1541 aa19.58■□□□□ 0.73
SQSTM1-205ENST00000464493 TATP17735 454 aaPredicted RBP19.58■□□□□ 0.72
SQSTM1-205ENST00000464493 NCAPD2Q15021 1401 aa19.58■□□□□ 0.72
SQSTM1-205ENST00000464493 PARD3Q8TEW0 1356 aa19.57■□□□□ 0.72
SQSTM1-205ENST00000464493 IGSF1Q8N6C5 1336 aa19.57■□□□□ 0.72
SQSTM1-205ENST00000464493 DIAPH1O60610 1272 aaKnown RBP19.57■□□□□ 0.72
SQSTM1-205ENST00000464493 ZCRB1Q8TBF4 217 aaKnown RBP19.57■□□□□ 0.72
SQSTM1-205ENST00000464493 RALBP1Q15311 655 aa19.56■□□□□ 0.72
SQSTM1-205ENST00000464493 OVOS2A0A0G2JMS6 1433 aa19.56■□□□□ 0.72
SQSTM1-205ENST00000464493 DDX54Q8TDD1 881 aaKnown RBP19.55■□□□□ 0.72
SQSTM1-205ENST00000464493 CFAP53Q96M91 514 aa19.55■□□□□ 0.72
SQSTM1-205ENST00000464493 SF3B2Q13435 895 aaKnown RBP19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms