RNA–Protein interactions for RNA: ENST00000463478.1

HERC4-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-208ENST00000463478 RPIAP49247 311 aa8.11□□□□□ -1.11
HERC4-208ENST00000463478 SRPK2P78362 688 aaKnown RBP8.11□□□□□ -1.11
HERC4-208ENST00000463478 SKOR1P84550 965 aa8.11□□□□□ -1.11
HERC4-208ENST00000463478 C1QTNF2Q9BXJ5 285 aa8.11□□□□□ -1.11
HERC4-208ENST00000463478 GIGYF1O75420 1035 aaPredicted RBP8.1□□□□□ -1.11
HERC4-208ENST00000463478 WNT7BP56706 349 aa8.1□□□□□ -1.11
HERC4-208ENST00000463478 NBPF20Q3BBV1 942 aa8.1□□□□□ -1.11
HERC4-208ENST00000463478 PHTF2Q8N3S3 785 aa8.1□□□□□ -1.11
HERC4-208ENST00000463478 PLPP7Q8NBV4 271 aa8.1□□□□□ -1.11
HERC4-208ENST00000463478 NCOA4Q13772 614 aa8.09□□□□□ -1.11
HERC4-208ENST00000463478 PLEKHM2Q8IWE5 1019 aa8.09□□□□□ -1.11
HERC4-208ENST00000463478 EHBP1Q8NDI1 1231 aa8.09□□□□□ -1.11
HERC4-208ENST00000463478 VRTNQ9H8Y1 702 aa8.09□□□□□ -1.11
HERC4-208ENST00000463478 CD2BP2O95400 341 aaKnown RBP8.08□□□□□ -1.12
HERC4-208ENST00000463478 CSB-PGBD3P0DP91 1061 aa8.08□□□□□ -1.12
HERC4-208ENST00000463478 VARSP26640 1264 aaKnown RBP8.08□□□□□ -1.12
HERC4-208ENST00000463478 RAB15P59190 212 aa8.08□□□□□ -1.12
HERC4-208ENST00000463478 KANK4Q5T7N3 995 aaPredicted RBP8.08□□□□□ -1.12
HERC4-208ENST00000463478 LIAT1Q6ZQX7 453 aa8.08□□□□□ -1.12
HERC4-208ENST00000463478 TRMT44Q8IYL2 757 aaKnown RBP8.08□□□□□ -1.12
HERC4-208ENST00000463478 DOLKQ9UPQ8 538 aa8.08□□□□□ -1.12
HERC4-208ENST00000463478 EML3Q32P44 896 aa8.07□□□□□ -1.12
HERC4-208ENST00000463478 MAP7D1Q3KQU3 841 aa8.07□□□□□ -1.12
HERC4-208ENST00000463478 RNF20Q5VTR2 975 aa8.07□□□□□ -1.12
HERC4-208ENST00000463478 CCDC85AQ96PX6 553 aaPredicted RBP8.07□□□□□ -1.12
HERC4-208ENST00000463478 CDV3Q9UKY7 258 aaKnown RBP8.07□□□□□ -1.12
HERC4-208ENST00000463478 ATG7O95352 703 aa8.06□□□□□ -1.12
HERC4-208ENST00000463478 ARID5BQ14865 1188 aa8.06□□□□□ -1.12
HERC4-208ENST00000463478 TSGA10IPQ3SY00 556 aa8.06□□□□□ -1.12
HERC4-208ENST00000463478 OXLD1Q5BKU9 147 aa8.06□□□□□ -1.12
HERC4-208ENST00000463478 RC3H1Q5TC82 1133 aaKnown RBP8.06□□□□□ -1.12
HERC4-208ENST00000463478 TRAF7Q6Q0C0 670 aa8.06□□□□□ -1.12
HERC4-208ENST00000463478 VASH1Q7L8A9 365 aaPredicted RBP8.06□□□□□ -1.12
HERC4-208ENST00000463478 KCTD15Q96SI1 283 aaPredicted RBP8.06□□□□□ -1.12
HERC4-208ENST00000463478 MKRN1Q9UHC7 482 aaKnown RBP8.06□□□□□ -1.12
HERC4-208ENST00000463478 LZTS3O60299 673 aaPredicted RBP8.05□□□□□ -1.12
HERC4-208ENST00000463478 SLC19A1P41440 591 aa8.05□□□□□ -1.12
HERC4-208ENST00000463478 EMID1Q96A84 441 aaPredicted RBP8.05□□□□□ -1.12
HERC4-208ENST00000463478 TRAIPQ9BWF2 469 aa8.05□□□□□ -1.12
HERC4-208ENST00000463478 CHIC2Q9UKJ5 165 aa8.05□□□□□ -1.12
HERC4-208ENST00000463478 PCDHB11Q9Y5F2 797 aa8.05□□□□□ -1.12
HERC4-208ENST00000463478 ESPNB1AK53 854 aa8.04□□□□□ -1.12
HERC4-208ENST00000463478 ATP5J2-PTCD1G3V325 749 aa8.04□□□□□ -1.12
HERC4-208ENST00000463478 PDE4CQ08493 712 aa8.04□□□□□ -1.12
HERC4-208ENST00000463478 LAPTM4AQ15012 233 aa8.04□□□□□ -1.12
HERC4-208ENST00000463478 TLL2Q9Y6L7 1015 aa8.04□□□□□ -1.12
HERC4-208ENST00000463478 USP17L15C9J2P7 530 aa8.03□□□□□ -1.12
HERC4-208ENST00000463478 USP17L10C9JJH3 530 aa8.03□□□□□ -1.12
HERC4-208ENST00000463478 USP17L13C9JLJ4 530 aa8.03□□□□□ -1.12
HERC4-208ENST00000463478 USP17L12C9JPN9 530 aa8.03□□□□□ -1.12
HERC4-208ENST00000463478 USP17L11C9JVI0 530 aa8.03□□□□□ -1.12
HERC4-208ENST00000463478 USP17L21D6R901 530 aa8.03□□□□□ -1.12
HERC4-208ENST00000463478 USP17L18D6R9N7 530 aa8.03□□□□□ -1.12
HERC4-208ENST00000463478 USP17L22D6RA61 530 aa8.03□□□□□ -1.12
HERC4-208ENST00000463478 USP17L17D6RBQ6 530 aa8.03□□□□□ -1.12
HERC4-208ENST00000463478 USP17L19D6RCP7 530 aa8.03□□□□□ -1.12
HERC4-208ENST00000463478 USP17L20D6RJB6 530 aa8.03□□□□□ -1.12
HERC4-208ENST00000463478 RASA1P20936 1047 aa8.03□□□□□ -1.12
HERC4-208ENST00000463478 USP17L24Q0WX57 530 aa8.03□□□□□ -1.12
HERC4-208ENST00000463478 LARP1Q6PKG0 1096 aaKnown RBP8.03□□□□□ -1.12
HERC4-208ENST00000463478 SEPT12Q8IYM1 358 aa8.03□□□□□ -1.12
HERC4-208ENST00000463478 NOD1Q9Y239 953 aa8.03□□□□□ -1.12
HERC4-208ENST00000463478 USTQ9Y2C2 406 aa8.03□□□□□ -1.12
HERC4-208ENST00000463478 MAP4K5Q9Y4K4 846 aa8.03□□□□□ -1.12
HERC4-208ENST00000463478 CARNS1A5YM72 827 aa8.02□□□□□ -1.13
HERC4-208ENST00000463478 FSHRP23945 695 aa8.02□□□□□ -1.13
HERC4-208ENST00000463478 CRTC2Q53ET0 693 aaPredicted RBP8.02□□□□□ -1.13
HERC4-208ENST00000463478 INTS6LQ5JSJ4 861 aaKnown RBP8.02□□□□□ -1.13
HERC4-208ENST00000463478 CDCA7Q9BWT1 371 aaPredicted RBP8.02□□□□□ -1.13
HERC4-208ENST00000463478 NOVA2Q9UNW9 492 aaKnown RBP8.02□□□□□ -1.13
HERC4-208ENST00000463478 FAM196BA6NMK8 535 aa8.01□□□□□ -1.13
HERC4-208ENST00000463478 TRIM26Q12899 539 aaPredicted RBP8.01□□□□□ -1.13
HERC4-208ENST00000463478 TRIM50Q86XT4 487 aa8.01□□□□□ -1.13
HERC4-208ENST00000463478 WNT7AO00755 349 aa8□□□□□ -1.13
HERC4-208ENST00000463478 NRG2O14511 850 aaPredicted RBP8□□□□□ -1.13
HERC4-208ENST00000463478 GFRA3O60609 400 aa8□□□□□ -1.13
HERC4-208ENST00000463478 ELOAQ14241 798 aaKnown RBP8□□□□□ -1.13
HERC4-208ENST00000463478 SPRYD7Q5W111 196 aa8□□□□□ -1.13
HERC4-208ENST00000463478 Q6ZNB5 142 aa8□□□□□ -1.13
HERC4-208ENST00000463478 AEBP1Q8IUX7 1158 aa8□□□□□ -1.13
HERC4-208ENST00000463478 OGFOD1Q8N543 542 aa8□□□□□ -1.13
HERC4-208ENST00000463478 STK32AQ8WU08 396 aa8□□□□□ -1.13
HERC4-208ENST00000463478 ZNF594Q96JF6 807 aaPredicted RBP8□□□□□ -1.13
HERC4-208ENST00000463478 MRGPRX2Q96LB1 330 aa8□□□□□ -1.13
HERC4-208ENST00000463478 ZMIZ1Q9ULJ6 1067 aa8□□□□□ -1.13
HERC4-208ENST00000463478 ERVH48-1M5A8F1 160 aa7.99□□□□□ -1.13
HERC4-208ENST00000463478 ATP1A2P50993 1020 aa7.99□□□□□ -1.13
HERC4-208ENST00000463478 GTF2IP78347 998 aa7.99□□□□□ -1.13
HERC4-208ENST00000463478 USP4Q13107 963 aa7.99□□□□□ -1.13
HERC4-208ENST00000463478 PTK7Q13308 1070 aa7.99□□□□□ -1.13
HERC4-208ENST00000463478 ZNF697Q5TEC3 545 aa7.99□□□□□ -1.13
HERC4-208ENST00000463478 CCDC125Q86Z20 511 aa7.99□□□□□ -1.13
HERC4-208ENST00000463478 SIRT1Q96EB6 747 aa7.99□□□□□ -1.13
HERC4-208ENST00000463478 CDK15Q96Q40 435 aa7.99□□□□□ -1.13
HERC4-208ENST00000463478 DNAAF2Q9NVR5 837 aaKnown RBP7.99□□□□□ -1.13
HERC4-208ENST00000463478 TMEM88BA6NKF7 163 aa7.98□□□□□ -1.13
HERC4-208ENST00000463478 SIAH2O43255 324 aa7.98□□□□□ -1.13
HERC4-208ENST00000463478 MYCP01106 439 aaPredicted RBP7.98□□□□□ -1.13
HERC4-208ENST00000463478 CLDN10P78369 228 aa7.98□□□□□ -1.13
HERC4-208ENST00000463478 PSME1Q06323 249 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms