RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 QPCTQ16769 361 aa9.67□□□□□ -0.86
USH2A-203ENST00000463147 PDXDC2PQ6P474 469 aa9.66□□□□□ -0.86
USH2A-203ENST00000463147 Q6ZVU0 165 aa9.66□□□□□ -0.86
USH2A-203ENST00000463147 SPINT1O43278 529 aa9.65□□□□□ -0.86
USH2A-203ENST00000463147 CLK2P49760 499 aaKnown RBP9.65□□□□□ -0.86
USH2A-203ENST00000463147 PDE4DQ08499 809 aa9.65□□□□□ -0.86
USH2A-203ENST00000463147 ERFEQ4G0M1 354 aa9.65□□□□□ -0.86
USH2A-203ENST00000463147 PPP1R26Q5T8A7 1209 aaPredicted RBP9.65□□□□□ -0.86
USH2A-203ENST00000463147 CNTNAP3BQ96NU0 1288 aa9.65□□□□□ -0.86
USH2A-203ENST00000463147 CNTNAP3Q9BZ76 1288 aa9.65□□□□□ -0.86
USH2A-203ENST00000463147 ZC3H4Q9UPT8 1303 aaKnown RBP9.64□□□□□ -0.87
USH2A-203ENST00000463147 GDF11O95390 407 aa9.64□□□□□ -0.87
USH2A-203ENST00000463147 SLC10A4Q96EP9 437 aa9.64□□□□□ -0.87
USH2A-203ENST00000463147 CARD14Q9BXL6 1004 aa9.64□□□□□ -0.87
USH2A-203ENST00000463147 RASSF7Q02833 373 aa9.63□□□□□ -0.87
USH2A-203ENST00000463147 KCTD17Q8N5Z5 321 aa9.63□□□□□ -0.87
USH2A-203ENST00000463147 CCDC155Q8N6L0 562 aa9.63□□□□□ -0.87
USH2A-203ENST00000463147 TRIM52Q96A61 297 aa9.63□□□□□ -0.87
USH2A-203ENST00000463147 ARHGAP9Q9BRR9 750 aa9.63□□□□□ -0.87
USH2A-203ENST00000463147 ADAMTS8Q9UP79 889 aa9.63□□□□□ -0.87
USH2A-203ENST00000463147 SUZ12Q15022 739 aaKnown RBP9.62□□□□□ -0.87
USH2A-203ENST00000463147 RTL5Q5HYW3 569 aaPredicted RBP9.62□□□□□ -0.87
USH2A-203ENST00000463147 COL25A1Q9BXS0 654 aaPredicted RBP9.62□□□□□ -0.87
USH2A-203ENST00000463147 GSK3AP49840 483 aa9.61□□□□□ -0.87
USH2A-203ENST00000463147 KRT76Q01546 638 aa9.61□□□□□ -0.87
USH2A-203ENST00000463147 ZBTB33Q86T24 672 aa9.61□□□□□ -0.87
USH2A-203ENST00000463147 GPR161Q8N6U8 529 aaKnown RBP9.61□□□□□ -0.87
USH2A-203ENST00000463147 KCTD15Q96SI1 283 aaPredicted RBP9.61□□□□□ -0.87
USH2A-203ENST00000463147 SLC35F4A4IF30 521 aa9.6□□□□□ -0.87
USH2A-203ENST00000463147 FIGNL2A6NMB9 653 aa9.6□□□□□ -0.87
USH2A-203ENST00000463147 SV2AQ7L0J3 742 aa9.6□□□□□ -0.87
USH2A-203ENST00000463147 FKBPLQ9UIM3 349 aa9.6□□□□□ -0.87
USH2A-203ENST00000463147 GPSM3Q9Y4H4 160 aa9.6□□□□□ -0.87
USH2A-203ENST00000463147 SVOPQ8N4V2 548 aa9.59□□□□□ -0.87
USH2A-203ENST00000463147 PNMA1Q8ND90 353 aa9.59□□□□□ -0.87
USH2A-203ENST00000463147 ITGA6P23229 1130 aa9.58□□□□□ -0.88
USH2A-203ENST00000463147 PTK2Q05397 1052 aa9.58□□□□□ -0.88
USH2A-203ENST00000463147 CBLBQ13191 982 aa9.58□□□□□ -0.88
USH2A-203ENST00000463147 SLURP2P0DP57 97 aa9.57□□□□□ -0.88
USH2A-203ENST00000463147 NBPF20Q3BBV1 942 aa9.57□□□□□ -0.88
USH2A-203ENST00000463147 IGHA1P01876 353 aa9.56□□□□□ -0.88
USH2A-203ENST00000463147 CTDSPL2Q05D32 466 aa9.56□□□□□ -0.88
USH2A-203ENST00000463147 ZNF385CQ66K41 422 aaPredicted RBP9.56□□□□□ -0.88
USH2A-203ENST00000463147 KANK3Q6NY19 840 aa9.56□□□□□ -0.88
USH2A-203ENST00000463147 MARSP56192 900 aaKnown RBP9.55□□□□□ -0.88
USH2A-203ENST00000463147 FOXK2Q01167 660 aa9.55□□□□□ -0.88
USH2A-203ENST00000463147 SCARF2Q96GP6 870 aaPredicted RBP9.55□□□□□ -0.88
USH2A-203ENST00000463147 CDC14CA4D256 554 aa9.54□□□□□ -0.88
USH2A-203ENST00000463147 VWA5B2Q8N398 1253 aa9.54□□□□□ -0.88
USH2A-203ENST00000463147 POLMQ9NP87 494 aaPredicted RBP9.54□□□□□ -0.88
USH2A-203ENST00000463147 DNMT3AQ9Y6K1 912 aaPredicted RBP9.54□□□□□ -0.88
USH2A-203ENST00000463147 INTS6LQ5JSJ4 861 aaKnown RBP9.53□□□□□ -0.88
USH2A-203ENST00000463147 POLR3EQ9NVU0 708 aa9.53□□□□□ -0.88
USH2A-203ENST00000463147 RELBQ01201 579 aa9.52□□□□□ -0.89
USH2A-203ENST00000463147 CTSOP43234 321 aaPredicted RBP9.51□□□□□ -0.89
USH2A-203ENST00000463147 MAP3K10Q02779 954 aa9.51□□□□□ -0.89
USH2A-203ENST00000463147 RNFT1Q5M7Z0 435 aa9.51□□□□□ -0.89
USH2A-203ENST00000463147 INSM2Q96T92 566 aaPredicted RBP9.51□□□□□ -0.89
USH2A-203ENST00000463147 ENAMQ9NRM1 1142 aa9.51□□□□□ -0.89
USH2A-203ENST00000463147 ARHGEF15O94989 841 aa9.5□□□□□ -0.89
USH2A-203ENST00000463147 SKIV2LQ15477 1246 aaKnown RBP9.5□□□□□ -0.89
USH2A-203ENST00000463147 RNF217Q8TC41 542 aa9.5□□□□□ -0.89
USH2A-203ENST00000463147 GMCL1Q96IK5 515 aa9.5□□□□□ -0.89
USH2A-203ENST00000463147 ADH1AP07327 375 aa9.49□□□□□ -0.89
USH2A-203ENST00000463147 SRSF11Q05519 484 aaKnown RBP9.49□□□□□ -0.89
USH2A-203ENST00000463147 AGBL1Q96MI9 1066 aa9.49□□□□□ -0.89
USH2A-203ENST00000463147 IRS1P35568 1242 aa9.48□□□□□ -0.89
USH2A-203ENST00000463147 NR6A1Q15406 480 aa9.48□□□□□ -0.89
USH2A-203ENST00000463147 PPP2R2DQ66LE6 453 aa9.48□□□□□ -0.89
USH2A-203ENST00000463147 ADAM32Q8TC27 787 aa9.48□□□□□ -0.89
USH2A-203ENST00000463147 LRRN4Q8WUT4 740 aa9.48□□□□□ -0.89
USH2A-203ENST00000463147 SLC24A3Q9HC58 644 aa9.48□□□□□ -0.89
USH2A-203ENST00000463147 ADAMTS2O95450 1211 aa9.46□□□□□ -0.9
USH2A-203ENST00000463147 SH3D19Q5HYK7 790 aa9.46□□□□□ -0.9
USH2A-203ENST00000463147 FOXR1Q6PIV2 292 aa9.46□□□□□ -0.9
USH2A-203ENST00000463147 LYSMD3Q7Z3D4 306 aa9.46□□□□□ -0.9
USH2A-203ENST00000463147 DZIP3Q86Y13 1208 aaKnown RBP9.46□□□□□ -0.9
USH2A-203ENST00000463147 CCDC125Q86Z20 511 aa9.46□□□□□ -0.9
USH2A-203ENST00000463147 SEPT12Q8IYM1 358 aa9.46□□□□□ -0.9
USH2A-203ENST00000463147 ZNF395Q9H8N7 513 aaPredicted RBP9.46□□□□□ -0.9
USH2A-203ENST00000463147 ATP1B4Q9UN42 357 aaPredicted RBP9.46□□□□□ -0.9
USH2A-203ENST00000463147 PTGIRP43119 386 aa9.45□□□□□ -0.9
USH2A-203ENST00000463147 WHAMMQ8TF30 809 aa9.45□□□□□ -0.9
USH2A-203ENST00000463147 SENP3-EIF4A1A0A087X0R7 540 aa9.44□□□□□ -0.9
USH2A-203ENST00000463147 GPAT2Q6NUI2 795 aa9.44□□□□□ -0.9
USH2A-203ENST00000463147 ZNF784Q8NCA9 323 aaPredicted RBP9.44□□□□□ -0.9
USH2A-203ENST00000463147 DDRGK1Q96HY6 314 aa9.44□□□□□ -0.9
USH2A-203ENST00000463147 PHF20L1A8MW92 1017 aa9.43□□□□□ -0.9
USH2A-203ENST00000463147 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.43□□□□□ -0.9
USH2A-203ENST00000463147 OCSTAMPQ9BR26 566 aa9.42□□□□□ -0.9
USH2A-203ENST00000463147 TMPRSS4Q9NRS4 437 aa9.42□□□□□ -0.9
USH2A-203ENST00000463147 ESPNB1AK53 854 aa9.41□□□□□ -0.9
USH2A-203ENST00000463147 ERVH48-1M5A8F1 160 aa9.41□□□□□ -0.9
USH2A-203ENST00000463147 LILRA1O75019 489 aa9.41□□□□□ -0.9
USH2A-203ENST00000463147 AP1G2O75843 785 aa9.41□□□□□ -0.9
USH2A-203ENST00000463147 GPC1P35052 558 aa9.41□□□□□ -0.9
USH2A-203ENST00000463147 RNF144AP50876 292 aaPredicted RBP9.41□□□□□ -0.9
USH2A-203ENST00000463147 FOXD4L5Q5VV16 416 aaPredicted RBP9.41□□□□□ -0.9
USH2A-203ENST00000463147 LYPD4Q6UWN0 246 aa9.41□□□□□ -0.9
USH2A-203ENST00000463147 CELA2BP08218 269 aaPredicted RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms