RNA–Protein interactions for RNA: ENST00000461221.5

BRCA1-205, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 5,693 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-205ENST00000461221 SHTN1A0MZ66 631 aa10.59□□□□□ -0.71
BRCA1-205ENST00000461221 SMG6Q86US8 1419 aaKnown RBP10.59□□□□□ -0.71
BRCA1-205ENST00000461221 EPB41L2O43491 1005 aaKnown RBP10.59□□□□□ -0.71
BRCA1-205ENST00000461221 KIAA1328Q86T90 577 aa10.59□□□□□ -0.71
BRCA1-205ENST00000461221 GIMAP7Q8NHV1 300 aa10.59□□□□□ -0.71
BRCA1-205ENST00000461221 WASF1Q92558 559 aa10.59□□□□□ -0.71
BRCA1-205ENST00000461221 CFAP45Q9UL16 551 aa10.59□□□□□ -0.71
BRCA1-205ENST00000461221 KIF2AO00139 706 aaPredicted RBP10.59□□□□□ -0.71
BRCA1-205ENST00000461221 ATP2B2Q01814 1243 aa10.59□□□□□ -0.71
BRCA1-205ENST00000461221 ZNF397Q8NF99 534 aaPredicted RBP10.59□□□□□ -0.71
BRCA1-205ENST00000461221 ZSCAN31Q96LW9 406 aaPredicted RBP10.59□□□□□ -0.71
BRCA1-205ENST00000461221 MAP2K1Q02750 393 aaPredicted RBP10.58□□□□□ -0.72
BRCA1-205ENST00000461221 GOLGA6L10A0A0M3HER8 536 aa10.58□□□□□ -0.72
BRCA1-205ENST00000461221 MPHOSPH10O00566 681 aaKnown RBP10.58□□□□□ -0.72
BRCA1-205ENST00000461221 MCM3P25205 808 aa10.58□□□□□ -0.72
BRCA1-205ENST00000461221 PKNOX2Q96KN3 472 aa10.58□□□□□ -0.72
BRCA1-205ENST00000461221 UQCRHLA0A096LP55 91 aa10.58□□□□□ -0.72
BRCA1-205ENST00000461221 UQCRHP07919 91 aa10.58□□□□□ -0.72
BRCA1-205ENST00000461221 RRBP1Q9P2E9 1410 aaKnown RBP10.57□□□□□ -0.72
BRCA1-205ENST00000461221 PPP1R12BO60237 982 aaPredicted RBP10.57□□□□□ -0.72
BRCA1-205ENST00000461221 CRACR2AQ9BSW2 395 aa10.57□□□□□ -0.72
BRCA1-205ENST00000461221 EIF5P55010 431 aaKnown RBP10.57□□□□□ -0.72
BRCA1-205ENST00000461221 MAP9Q49MG5 647 aa10.57□□□□□ -0.72
BRCA1-205ENST00000461221 ARHGAP29Q52LW3 1261 aa10.57□□□□□ -0.72
BRCA1-205ENST00000461221 SRCIN1Q9C0H9 1055 aa10.57□□□□□ -0.72
BRCA1-205ENST00000461221 CEP131Q9UPN4 1083 aa10.57□□□□□ -0.72
BRCA1-205ENST00000461221 BRD4O60885 1362 aaPredicted RBP10.57□□□□□ -0.72
BRCA1-205ENST00000461221 K7ELQ4 463 aaPredicted RBP10.57□□□□□ -0.72
BRCA1-205ENST00000461221 CCT4P50991 539 aaKnown RBP10.57□□□□□ -0.72
BRCA1-205ENST00000461221 IMMTQ16891 758 aaKnown RBP10.57□□□□□ -0.72
BRCA1-205ENST00000461221 FAM177A1Q8N128 213 aaPredicted RBP10.57□□□□□ -0.72
BRCA1-205ENST00000461221 SPATA32Q96LK8 384 aa10.57□□□□□ -0.72
BRCA1-205ENST00000461221 UPF3BQ9BZI7 483 aaKnown RBP10.57□□□□□ -0.72
BRCA1-205ENST00000461221 CTNNA3Q9UI47 895 aa10.57□□□□□ -0.72
BRCA1-205ENST00000461221 PDZRN3Q9UPQ7 1066 aa10.57□□□□□ -0.72
BRCA1-205ENST00000461221 GPRASP1Q5JY77 1395 aa10.57□□□□□ -0.72
BRCA1-205ENST00000461221 MATR3P43243 847 aaKnown RBP eCLIP10.57□□□□□ -0.72
BRCA1-205ENST00000461221 LARP1BQ659C4 914 aaKnown RBP10.56□□□□□ -0.72
BRCA1-205ENST00000461221 PPM1EQ8WY54 764 aa10.56□□□□□ -0.72
BRCA1-205ENST00000461221 NUP62CLQ9H1M0 184 aa10.56□□□□□ -0.72
BRCA1-205ENST00000461221 PNISRQ8TF01 805 aaKnown RBP10.56□□□□□ -0.72
BRCA1-205ENST00000461221 PPP6R1Q9UPN7 881 aa10.56□□□□□ -0.72
BRCA1-205ENST00000461221 UBXN4Q92575 508 aa10.56□□□□□ -0.72
BRCA1-205ENST00000461221 GRPEL1Q9HAV7 217 aa10.56□□□□□ -0.72
BRCA1-205ENST00000461221 CNTLNQ9NXG0 1405 aa10.56□□□□□ -0.72
BRCA1-205ENST00000461221 KRT32Q14532 448 aa10.56□□□□□ -0.72
BRCA1-205ENST00000461221 NUP133Q8WUM0 1156 aa10.56□□□□□ -0.72
BRCA1-205ENST00000461221 STK3Q13188 491 aa10.56□□□□□ -0.72
BRCA1-205ENST00000461221 SSBP05455 408 aaKnown RBP eCLIP10.55□□□□□ -0.72
BRCA1-205ENST00000461221 NF2P35240 595 aa10.55□□□□□ -0.72
BRCA1-205ENST00000461221 SSR1P43307 286 aaKnown RBP10.55□□□□□ -0.72
BRCA1-205ENST00000461221 ANAPC15P60006 121 aa10.55□□□□□ -0.72
BRCA1-205ENST00000461221 TMCO3Q6UWJ1 677 aa10.55□□□□□ -0.72
BRCA1-205ENST00000461221 AEBP2Q6ZN18 517 aaPredicted RBP10.55□□□□□ -0.72
BRCA1-205ENST00000461221 SMARCA2P51531 1590 aa10.55□□□□□ -0.72
BRCA1-205ENST00000461221 ZNF76P36508 570 aa10.55□□□□□ -0.72
BRCA1-205ENST00000461221 PDE3AQ14432 1141 aa10.55□□□□□ -0.72
BRCA1-205ENST00000461221 SPA17Q15506 151 aa10.55□□□□□ -0.72
BRCA1-205ENST00000461221 TWISTNBQ3B726 338 aaPredicted RBP10.55□□□□□ -0.72
BRCA1-205ENST00000461221 UBAC1Q9BSL1 405 aa10.55□□□□□ -0.72
BRCA1-205ENST00000461221 RBM42Q9BTD8 480 aaKnown RBP10.55□□□□□ -0.72
BRCA1-205ENST00000461221 CIZ1Q9ULV3 898 aaPredicted RBP10.55□□□□□ -0.72
BRCA1-205ENST00000461221 FAM177BA6PVY3 158 aa10.54□□□□□ -0.72
BRCA1-205ENST00000461221 GCOM1H8Y6P7 765 aaPredicted RBP10.54□□□□□ -0.72
BRCA1-205ENST00000461221 ZSCAN12O43309 604 aa10.54□□□□□ -0.72
BRCA1-205ENST00000461221 MYZAPP0CAP1 466 aa10.54□□□□□ -0.72
BRCA1-205ENST00000461221 SMC1AQ14683 1233 aaKnown RBP10.54□□□□□ -0.72
BRCA1-205ENST00000461221 MICALCLQ6ZW33 695 aa10.54□□□□□ -0.72
BRCA1-205ENST00000461221 CCDC7Q96M83 1385 aa10.54□□□□□ -0.72
BRCA1-205ENST00000461221 SCAPERQ9BY12 1400 aa10.54□□□□□ -0.72
BRCA1-205ENST00000461221 NLRP6P59044 892 aa10.54□□□□□ -0.72
BRCA1-205ENST00000461221 BLOC1S2Q6QNY1 142 aa10.54□□□□□ -0.72
BRCA1-205ENST00000461221 GGNBP2Q9H3C7 697 aa10.54□□□□□ -0.72
BRCA1-205ENST00000461221 CEP63Q96MT8 703 aa10.54□□□□□ -0.72
BRCA1-205ENST00000461221 FEZ1Q99689 392 aa10.54□□□□□ -0.72
BRCA1-205ENST00000461221 FAM107BQ9H098 131 aa10.54□□□□□ -0.72
BRCA1-205ENST00000461221 ABCC8Q09428 1581 aa10.54□□□□□ -0.72
BRCA1-205ENST00000461221 JPH4Q96JJ6 628 aa10.53□□□□□ -0.72
BRCA1-205ENST00000461221 PDRG1Q9NUG6 133 aa10.53□□□□□ -0.72
BRCA1-205ENST00000461221 TNIP1Q15025 636 aa10.53□□□□□ -0.72
BRCA1-205ENST00000461221 VPS36Q86VN1 386 aa10.53□□□□□ -0.72
BRCA1-205ENST00000461221 RRP9O43818 475 aaKnown RBP10.53□□□□□ -0.72
BRCA1-205ENST00000461221 TATP17735 454 aaPredicted RBP10.53□□□□□ -0.72
BRCA1-205ENST00000461221 ANKRD18BA2A2Z9 1011 aa10.53□□□□□ -0.72
BRCA1-205ENST00000461221 TSG101Q99816 390 aa10.53□□□□□ -0.72
BRCA1-205ENST00000461221 FKBP15Q5T1M5 1219 aa10.52□□□□□ -0.72
BRCA1-205ENST00000461221 CCDC88BA6NC98 1476 aa10.52□□□□□ -0.73
BRCA1-205ENST00000461221 DHX37Q8IY37 1157 aaKnown RBP10.52□□□□□ -0.73
BRCA1-205ENST00000461221 TCP11L2Q8N4U5 519 aa10.52□□□□□ -0.73
BRCA1-205ENST00000461221 DDX11Q96FC9 970 aa10.52□□□□□ -0.73
BRCA1-205ENST00000461221 TDO2P48775 406 aa10.51□□□□□ -0.73
BRCA1-205ENST00000461221 MAP3K11Q16584 847 aa10.51□□□□□ -0.73
BRCA1-205ENST00000461221 PPP4R3AQ6IN85 833 aa10.51□□□□□ -0.73
BRCA1-205ENST00000461221 MPHOSPH8Q99549 860 aa10.51□□□□□ -0.73
BRCA1-205ENST00000461221 PHF23Q9BUL5 403 aaPredicted RBP10.51□□□□□ -0.73
BRCA1-205ENST00000461221 BRPF3Q9ULD4 1205 aa10.51□□□□□ -0.73
BRCA1-205ENST00000461221 KIF5CO60282 957 aa10.51□□□□□ -0.73
BRCA1-205ENST00000461221 EXOSC9Q06265 439 aaKnown RBP10.51□□□□□ -0.73
BRCA1-205ENST00000461221 CFAP100Q494V2 611 aa10.51□□□□□ -0.73
BRCA1-205ENST00000461221 SPATA24Q86W54 205 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms