RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 SLIT3O75094 1523 aa14.83□□□□□ -0.04
SCN9A-205ENST00000454569 NFAT5O94916 1531 aa14.83□□□□□ -0.04
SCN9A-205ENST00000454569 ABCA3Q99758 1704 aa14.83□□□□□ -0.04
SCN9A-205ENST00000454569 USP19O94966 1318 aa14.82□□□□□ -0.04
SCN9A-205ENST00000454569 PNISRQ8TF01 805 aaKnown RBP14.81□□□□□ -0.04
SCN9A-205ENST00000454569 AATKQ6ZMQ8 1374 aa14.81□□□□□ -0.04
SCN9A-205ENST00000454569 COL3A1P02461 1466 aaPredicted RBP14.81□□□□□ -0.04
SCN9A-205ENST00000454569 PPM1GO15355 546 aaPredicted RBP14.81□□□□□ -0.04
SCN9A-205ENST00000454569 MAP3K19Q56UN5 1328 aa14.8□□□□□ -0.04
SCN9A-205ENST00000454569 FAM9BQ8IZU0 186 aa14.8□□□□□ -0.04
SCN9A-205ENST00000454569 SMG6Q86US8 1419 aaKnown RBP14.79□□□□□ -0.04
SCN9A-205ENST00000454569 GCP02774 474 aa14.79□□□□□ -0.04
SCN9A-205ENST00000454569 RGPD2P0DJD1 1756 aa14.78□□□□□ -0.04
SCN9A-205ENST00000454569 COL18A1P39060 1754 aa14.78□□□□□ -0.04
SCN9A-205ENST00000454569 PNPLA6Q8IY17 1366 aa14.77□□□□□ -0.04
SCN9A-205ENST00000454569 SENP3-EIF4A1A0A087X0R7 540 aa14.77□□□□□ -0.05
SCN9A-205ENST00000454569 ZC3H6P61129 1189 aaKnown RBP14.77□□□□□ -0.05
SCN9A-205ENST00000454569 HSP90AB2PQ58FF8 381 aa14.77□□□□□ -0.05
SCN9A-205ENST00000454569 ARHGEF10O15013 1369 aa14.77□□□□□ -0.05
SCN9A-205ENST00000454569 COL22A1Q8NFW1 1626 aaPredicted RBP14.76□□□□□ -0.05
SCN9A-205ENST00000454569 ZBTB7CA1YPR0 619 aa14.76□□□□□ -0.05
SCN9A-205ENST00000454569 CDK12Q9NYV4 1490 aaPredicted RBP14.75□□□□□ -0.05
SCN9A-205ENST00000454569 ARHGEF25Q86VW2 580 aa14.75□□□□□ -0.05
SCN9A-205ENST00000454569 LRRC59Q96AG4 307 aaKnown RBP14.75□□□□□ -0.05
SCN9A-205ENST00000454569 YTHDC1Q96MU7 727 aaKnown RBP14.75□□□□□ -0.05
SCN9A-205ENST00000454569 ADAMTS8Q9UP79 889 aa14.75□□□□□ -0.05
SCN9A-205ENST00000454569 INSRP06213 1382 aa14.74□□□□□ -0.05
SCN9A-205ENST00000454569 ABCB7O75027 752 aa14.73□□□□□ -0.05
SCN9A-205ENST00000454569 HOXC9P31274 260 aa14.73□□□□□ -0.05
SCN9A-205ENST00000454569 KCNH5Q8NCM2 988 aa14.73□□□□□ -0.05
SCN9A-205ENST00000454569 AXIN2Q9Y2T1 843 aa14.73□□□□□ -0.05
SCN9A-205ENST00000454569 IL13P35225 146 aa14.73□□□□□ -0.05
SCN9A-205ENST00000454569 RGPD1P0DJD0 1748 aa14.72□□□□□ -0.05
SCN9A-205ENST00000454569 HSPA1LP34931 641 aa14.72□□□□□ -0.05
SCN9A-205ENST00000454569 AMPHP49418 695 aa14.72□□□□□ -0.05
SCN9A-205ENST00000454569 EIF4A2Q14240 407 aaKnown RBP14.72□□□□□ -0.05
SCN9A-205ENST00000454569 CHRNA2Q15822 529 aa14.72□□□□□ -0.05
SCN9A-205ENST00000454569 KIAA0232Q92628 1395 aa14.71□□□□□ -0.05
SCN9A-205ENST00000454569 DIAPH1O60610 1272 aaKnown RBP14.71□□□□□ -0.05
SCN9A-205ENST00000454569 CFAP53Q96M91 514 aa14.71□□□□□ -0.05
SCN9A-205ENST00000454569 FLT4P35916 1363 aa14.71□□□□□ -0.06
SCN9A-205ENST00000454569 IP6K1Q92551 441 aa14.7□□□□□ -0.06
SCN9A-205ENST00000454569 ZBTB12Q9Y330 459 aaPredicted RBP14.7□□□□□ -0.06
SCN9A-205ENST00000454569 LTV1Q96GA3 475 aaPredicted RBP14.69□□□□□ -0.06
SCN9A-205ENST00000454569 LMO7Q8WWI1 1683 aa14.69□□□□□ -0.06
SCN9A-205ENST00000454569 U2SURPO15042 1029 aaKnown RBP14.68□□□□□ -0.06
SCN9A-205ENST00000454569 CCDC146Q8IYE0 955 aa14.68□□□□□ -0.06
SCN9A-205ENST00000454569 VASPP50552 380 aaPredicted RBP14.68□□□□□ -0.06
SCN9A-205ENST00000454569 WDR43Q15061 677 aaKnown RBP eCLIP14.68□□□□□ -0.06
SCN9A-205ENST00000454569 CAMTA1Q9Y6Y1 1673 aa14.67□□□□□ -0.06
SCN9A-205ENST00000454569 FAM83GA6ND36 823 aa14.67□□□□□ -0.06
SCN9A-205ENST00000454569 U2AF1L5P0DN76 240 aaPredicted RBP14.67□□□□□ -0.06
SCN9A-205ENST00000454569 U2AF1Q01081 240 aaKnown RBP eCLIP14.67□□□□□ -0.06
SCN9A-205ENST00000454569 CPDO75976 1380 aa14.67□□□□□ -0.06
SCN9A-205ENST00000454569 NUTM2BA6NNL0 878 aaPredicted RBP14.66□□□□□ -0.06
SCN9A-205ENST00000454569 NUTM2EB1AL46 878 aaPredicted RBP14.66□□□□□ -0.06
SCN9A-205ENST00000454569 HMOX1P09601 288 aa14.66□□□□□ -0.06
SCN9A-205ENST00000454569 HAP1P54257 671 aaPredicted RBP14.66□□□□□ -0.06
SCN9A-205ENST00000454569 AEBP1Q8IUX7 1158 aa14.66□□□□□ -0.06
SCN9A-205ENST00000454569 NUTM2AQ8IVF1 878 aaPredicted RBP14.66□□□□□ -0.06
SCN9A-205ENST00000454569 EYA1Q99502 592 aa14.66□□□□□ -0.06
SCN9A-205ENST00000454569 RTL1A6NKG5 1358 aa14.66□□□□□ -0.06
SCN9A-205ENST00000454569 KIF24Q5T7B8 1368 aa14.66□□□□□ -0.06
SCN9A-205ENST00000454569 BLMP54132 1417 aaPredicted RBP14.65□□□□□ -0.06
SCN9A-205ENST00000454569 USHBP1Q8N6Y0 703 aa14.64□□□□□ -0.07
SCN9A-205ENST00000454569 DLG5Q8TDM6 1919 aa14.64□□□□□ -0.07
SCN9A-205ENST00000454569 ADAMTS2O95450 1211 aa14.64□□□□□ -0.07
SCN9A-205ENST00000454569 NBPF6Q5VWK0 638 aa14.64□□□□□ -0.07
SCN9A-205ENST00000454569 ANKRD24Q8TF21 1146 aa14.64□□□□□ -0.07
SCN9A-205ENST00000454569 NBPF4Q96M43 638 aa14.64□□□□□ -0.07
SCN9A-205ENST00000454569 PLEKHF1Q96S99 279 aa14.64□□□□□ -0.07
SCN9A-205ENST00000454569 PRDM11Q9NQV5 511 aa14.64□□□□□ -0.07
SCN9A-205ENST00000454569 NUDCQ9Y266 331 aa14.64□□□□□ -0.07
SCN9A-205ENST00000454569 PLCH1Q4KWH8 1693 aa14.63□□□□□ -0.07
SCN9A-205ENST00000454569 JCADQ9P266 1359 aa14.63□□□□□ -0.07
SCN9A-205ENST00000454569 HNRNPUQ00839 825 aaKnown RBP eCLIP14.63□□□□□ -0.07
SCN9A-205ENST00000454569 RSPH6AQ9H0K4 717 aa14.63□□□□□ -0.07
SCN9A-205ENST00000454569 LRP6O75581 1613 aa14.63□□□□□ -0.07
SCN9A-205ENST00000454569 COL14A1Q05707 1796 aaKnown RBP14.62□□□□□ -0.07
SCN9A-205ENST00000454569 SULT6B1Q6IMI4 303 aa14.62□□□□□ -0.07
SCN9A-205ENST00000454569 SALL2Q9Y467 1007 aaPredicted RBP14.62□□□□□ -0.07
SCN9A-205ENST00000454569 IGSF1Q8N6C5 1336 aa14.61□□□□□ -0.07
SCN9A-205ENST00000454569 PHACTR3Q96KR7 559 aa14.61□□□□□ -0.07
SCN9A-205ENST00000454569 FAM208AQ9UK61 1670 aaKnown RBP14.61□□□□□ -0.07
SCN9A-205ENST00000454569 ERBB3P21860 1342 aa14.61□□□□□ -0.07
SCN9A-205ENST00000454569 ABCC6O95255 1503 aa14.61□□□□□ -0.07
SCN9A-205ENST00000454569 APAF1O14727 1248 aa14.6□□□□□ -0.07
SCN9A-205ENST00000454569 PRKAR2BP31323 418 aa14.6□□□□□ -0.07
SCN9A-205ENST00000454569 COL5A2P05997 1499 aaPredicted RBP14.6□□□□□ -0.07
SCN9A-205ENST00000454569 NRAPQ86VF7 1730 aa14.59□□□□□ -0.07
SCN9A-205ENST00000454569 FCHSD2O94868 740 aa14.59□□□□□ -0.07
SCN9A-205ENST00000454569 DSG3P32926 999 aa14.59□□□□□ -0.07
SCN9A-205ENST00000454569 BTG4Q9NY30 223 aa14.59□□□□□ -0.07
SCN9A-205ENST00000454569 RRP7AQ9Y3A4 280 aaKnown RBP14.59□□□□□ -0.07
SCN9A-205ENST00000454569 RUNDC1Q96C34 613 aa14.58□□□□□ -0.08
SCN9A-205ENST00000454569 NCAPD2Q15021 1401 aa14.57□□□□□ -0.08
SCN9A-205ENST00000454569 TCP11L2Q8N4U5 519 aa14.57□□□□□ -0.08
SCN9A-205ENST00000454569 STRN4Q9NRL3 753 aa14.57□□□□□ -0.08
SCN9A-205ENST00000454569 KDRP35968 1356 aa14.57□□□□□ -0.08
SCN9A-205ENST00000454569 LARP1Q6PKG0 1096 aaKnown RBP14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 138.5 ms