RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 HSP90AB2PQ58FF8 381 aa25.71■■□□□ 1.71
RPS28-202ENST00000449223 CABLES1Q8TDN4 633 aa25.7■■□□□ 1.7
RPS28-202ENST00000449223 EIF4A2Q14240 407 aaKnown RBP25.68■■□□□ 1.7
RPS28-202ENST00000449223 LMO7Q8WWI1 1683 aa25.67■■□□□ 1.7
RPS28-202ENST00000449223 KIAA0232Q92628 1395 aa25.65■■□□□ 1.7
RPS28-202ENST00000449223 RGPD5Q99666 1765 aa25.64■■□□□ 1.7
RPS28-202ENST00000449223 U2AF1L5P0DN76 240 aaPredicted RBP25.64■■□□□ 1.7
RPS28-202ENST00000449223 ZC3H6P61129 1189 aaKnown RBP25.64■■□□□ 1.7
RPS28-202ENST00000449223 U2AF1Q01081 240 aaKnown RBP eCLIP25.64■■□□□ 1.7
RPS28-202ENST00000449223 CAMTA1Q9Y6Y1 1673 aa25.64■■□□□ 1.7
RPS28-202ENST00000449223 YTHDC1Q96MU7 727 aaKnown RBP25.63■■□□□ 1.69
RPS28-202ENST00000449223 FAM208AQ9UK61 1670 aaKnown RBP25.63■■□□□ 1.69
RPS28-202ENST00000449223 U2SURPO15042 1029 aaKnown RBP25.63■■□□□ 1.69
RPS28-202ENST00000449223 FCHSD2O94868 740 aa25.62■■□□□ 1.69
RPS28-202ENST00000449223 KDRP35968 1356 aa25.61■■□□□ 1.69
RPS28-202ENST00000449223 JCADQ9P266 1359 aa25.61■■□□□ 1.69
RPS28-202ENST00000449223 IGSF1Q8N6C5 1336 aa25.61■■□□□ 1.69
RPS28-202ENST00000449223 NCAPD2Q15021 1401 aa25.61■■□□□ 1.69
RPS28-202ENST00000449223 AXIN2Q9Y2T1 843 aa25.6■■□□□ 1.69
RPS28-202ENST00000449223 COL14A1Q05707 1796 aaKnown RBP25.6■■□□□ 1.69
RPS28-202ENST00000449223 PLEKHG5O94827 1062 aa25.59■■□□□ 1.69
RPS28-202ENST00000449223 HNRNPUQ00839 825 aaKnown RBP eCLIP25.59■■□□□ 1.69
RPS28-202ENST00000449223 PLEKHF1Q96S99 279 aa25.59■■□□□ 1.69
RPS28-202ENST00000449223 PNNQ9H307 717 aaKnown RBP25.59■■□□□ 1.69
RPS28-202ENST00000449223 ERBB3P21860 1342 aa25.59■■□□□ 1.69
RPS28-202ENST00000449223 HAP1P54257 671 aaPredicted RBP25.58■■□□□ 1.69
RPS28-202ENST00000449223 RSPH6AQ9H0K4 717 aa25.58■■□□□ 1.69
RPS28-202ENST00000449223 RUNDC1Q96C34 613 aa25.58■■□□□ 1.68
RPS28-202ENST00000449223 PRDM11Q9NQV5 511 aa25.57■■□□□ 1.68
RPS28-202ENST00000449223 RGPD2P0DJD1 1756 aa25.56■■□□□ 1.68
RPS28-202ENST00000449223 ZBED9Q6R2W3 1325 aa25.56■■□□□ 1.68
RPS28-202ENST00000449223 EYA1Q99502 592 aa25.56■■□□□ 1.68
RPS28-202ENST00000449223 NCBP3Q53F19 620 aaKnown RBP25.55■■□□□ 1.68
RPS28-202ENST00000449223 NGEFQ8N5V2 710 aa25.55■■□□□ 1.68
RPS28-202ENST00000449223 ZBTB7CA1YPR0 619 aa25.54■■□□□ 1.68
RPS28-202ENST00000449223 ANKRD24Q8TF21 1146 aa25.53■■□□□ 1.68
RPS28-202ENST00000449223 COL5A2P05997 1499 aaPredicted RBP25.53■■□□□ 1.68
RPS28-202ENST00000449223 CHRNA2Q15822 529 aa25.53■■□□□ 1.68
RPS28-202ENST00000449223 CCDC146Q8IYE0 955 aa25.53■■□□□ 1.68
RPS28-202ENST00000449223 SPATA31A6Q5VVP1 1343 aa25.52■■□□□ 1.68
RPS28-202ENST00000449223 FAM83GA6ND36 823 aa25.51■■□□□ 1.67
RPS28-202ENST00000449223 HMOX1P09601 288 aa25.51■■□□□ 1.67
RPS28-202ENST00000449223 HSPA1LP34931 641 aa25.51■■□□□ 1.67
RPS28-202ENST00000449223 SULT6B1Q6IMI4 303 aa25.51■■□□□ 1.67
RPS28-202ENST00000449223 PRKAR2BP31323 418 aa25.5■■□□□ 1.67
RPS28-202ENST00000449223 PLCH1Q4KWH8 1693 aa25.49■■□□□ 1.67
RPS28-202ENST00000449223 APAF1O14727 1248 aa25.49■■□□□ 1.67
RPS28-202ENST00000449223 NBPF6Q5VWK0 638 aa25.49■■□□□ 1.67
RPS28-202ENST00000449223 AEBP1Q8IUX7 1158 aa25.49■■□□□ 1.67
RPS28-202ENST00000449223 LTV1Q96GA3 475 aaPredicted RBP25.49■■□□□ 1.67
RPS28-202ENST00000449223 NBPF4Q96M43 638 aa25.49■■□□□ 1.67
RPS28-202ENST00000449223 PLEKHG2Q9H7P9 1386 aa25.49■■□□□ 1.67
RPS28-202ENST00000449223 NWD2Q9ULI1 1742 aa25.48■■□□□ 1.67
RPS28-202ENST00000449223 TCP11L2Q8N4U5 519 aa25.48■■□□□ 1.67
RPS28-202ENST00000449223 WDR17Q8IZU2 1322 aa25.47■■□□□ 1.67
RPS28-202ENST00000449223 MAPK8IP3Q9UPT6 1336 aa25.47■■□□□ 1.67
RPS28-202ENST00000449223 PHF23Q9BUL5 403 aaPredicted RBP25.46■■□□□ 1.67
RPS28-202ENST00000449223 NRAPQ86VF7 1730 aa25.45■■□□□ 1.67
RPS28-202ENST00000449223 ZNF521Q96K83 1311 aa25.45■■□□□ 1.66
RPS28-202ENST00000449223 NEFMP07197 916 aa25.44■■□□□ 1.66
RPS28-202ENST00000449223 CCDC27Q2M243 656 aa25.44■■□□□ 1.66
RPS28-202ENST00000449223 PHACTR3Q96KR7 559 aa25.43■■□□□ 1.66
RPS28-202ENST00000449223 SLIT2O94813 1529 aa25.43■■□□□ 1.66
RPS28-202ENST00000449223 LRP6O75581 1613 aa25.42■■□□□ 1.66
RPS28-202ENST00000449223 TMPOP42166 694 aaKnown RBP25.42■■□□□ 1.66
RPS28-202ENST00000449223 DLG5Q8TDM6 1919 aa25.41■■□□□ 1.66
RPS28-202ENST00000449223 BTG4Q9NY30 223 aa25.4■■□□□ 1.66
RPS28-202ENST00000449223 NFE2L2Q16236 605 aa25.39■■□□□ 1.66
RPS28-202ENST00000449223 USHBP1Q8N6Y0 703 aa25.39■■□□□ 1.66
RPS28-202ENST00000449223 CRB1P82279 1406 aa25.39■■□□□ 1.65
RPS28-202ENST00000449223 ADAMTS2O95450 1211 aa25.38■■□□□ 1.65
RPS28-202ENST00000449223 CSB-PGBD3P0DP91 1061 aa25.38■■□□□ 1.65
RPS28-202ENST00000449223 NLRP2Q9NX02 1062 aa25.38■■□□□ 1.65
RPS28-202ENST00000449223 NUTM2BA6NNL0 878 aaPredicted RBP25.37■■□□□ 1.65
RPS28-202ENST00000449223 NUTM2EB1AL46 878 aaPredicted RBP25.37■■□□□ 1.65
RPS28-202ENST00000449223 PDE3BQ13370 1112 aa25.37■■□□□ 1.65
RPS28-202ENST00000449223 NUTM2AQ8IVF1 878 aaPredicted RBP25.37■■□□□ 1.65
RPS28-202ENST00000449223 CARD10Q9BWT7 1032 aa25.37■■□□□ 1.65
RPS28-202ENST00000449223 CENPBP07199 599 aaPredicted RBP25.37■■□□□ 1.65
RPS28-202ENST00000449223 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.36■■□□□ 1.65
RPS28-202ENST00000449223 WWC1Q8IX03 1113 aa25.36■■□□□ 1.65
RPS28-202ENST00000449223 PARP4Q9UKK3 1724 aaKnown RBP25.36■■□□□ 1.65
RPS28-202ENST00000449223 PKD1L3Q7Z443 1732 aa25.35■■□□□ 1.65
RPS28-202ENST00000449223 RRP7AQ9Y3A4 280 aaKnown RBP25.34■■□□□ 1.65
RPS28-202ENST00000449223 SENP3-EIF4A1A0A087X0R7 540 aa25.33■■□□□ 1.65
RPS28-202ENST00000449223 RIPK4P57078 832 aa25.33■■□□□ 1.65
RPS28-202ENST00000449223 EVA1CP58658 441 aa25.33■■□□□ 1.65
RPS28-202ENST00000449223 LARP1Q6PKG0 1096 aaKnown RBP25.33■■□□□ 1.65
RPS28-202ENST00000449223 TOM1L2Q6ZVM7 507 aa25.33■■□□□ 1.65
RPS28-202ENST00000449223 GAS2L2Q8NHY3 880 aa25.33■■□□□ 1.65
RPS28-202ENST00000449223 TRIM35Q9UPQ4 493 aa25.33■■□□□ 1.65
RPS28-202ENST00000449223 MEGF6O75095 1541 aa25.33■■□□□ 1.64
RPS28-202ENST00000449223 FBXO41Q8TF61 875 aa25.32■■□□□ 1.64
RPS28-202ENST00000449223 SALL2Q9Y467 1007 aaPredicted RBP25.32■■□□□ 1.64
RPS28-202ENST00000449223 MTHFSDQ2M296 383 aaKnown RBP25.32■■□□□ 1.64
RPS28-202ENST00000449223 AMOTQ4VCS5 1084 aa25.32■■□□□ 1.64
RPS28-202ENST00000449223 FNBP4Q8N3X1 1017 aaPredicted RBP25.32■■□□□ 1.64
RPS28-202ENST00000449223 STRN4Q9NRL3 753 aa25.32■■□□□ 1.64
RPS28-202ENST00000449223 WNK3Q9BYP7 1800 aa25.31■■□□□ 1.64
RPS28-202ENST00000449223 LMOD3Q0VAK6 560 aa25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms