RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 PARP4Q9UKK3 1724 aaKnown RBP10.02□□□□□ -0.81
VPS41-208ENST00000448833 KTN1Q86UP2 1357 aaKnown RBP10.01□□□□□ -0.81
VPS41-208ENST00000448833 TRIM37O94972 964 aa10.01□□□□□ -0.81
VPS41-208ENST00000448833 EN1Q05925 392 aaPredicted RBP10.01□□□□□ -0.81
VPS41-208ENST00000448833 HDGFL2Q7Z4V5 671 aaPredicted RBP10.01□□□□□ -0.81
VPS41-208ENST00000448833 COL5A2P05997 1499 aaPredicted RBP10.01□□□□□ -0.81
VPS41-208ENST00000448833 PIK3C2AO00443 1686 aa10.01□□□□□ -0.81
VPS41-208ENST00000448833 TTC21BQ7Z4L5 1316 aa10.01□□□□□ -0.81
VPS41-208ENST00000448833 ZBTB7CA1YPR0 619 aa10□□□□□ -0.81
VPS41-208ENST00000448833 APBA3O96018 575 aa10□□□□□ -0.81
VPS41-208ENST00000448833 FAM182BQ5T319 152 aa10□□□□□ -0.81
VPS41-208ENST00000448833 NBPF14Q5TI25 921 aa10□□□□□ -0.81
VPS41-208ENST00000448833 TOM1L2Q6ZVM7 507 aa10□□□□□ -0.81
VPS41-208ENST00000448833 TERF2IPQ9NYB0 399 aa10□□□□□ -0.81
VPS41-208ENST00000448833 LRP5O75197 1615 aa10□□□□□ -0.81
VPS41-208ENST00000448833 CPSF1Q10570 1443 aaKnown RBP9.99□□□□□ -0.81
VPS41-208ENST00000448833 MON2Q7Z3U7 1717 aa9.99□□□□□ -0.81
VPS41-208ENST00000448833 COL18A1P39060 1754 aa9.99□□□□□ -0.81
VPS41-208ENST00000448833 RGPD5Q99666 1765 aa9.99□□□□□ -0.81
VPS41-208ENST00000448833 DDB1Q16531 1140 aa9.99□□□□□ -0.81
VPS41-208ENST00000448833 ARHGEF25Q86VW2 580 aa9.99□□□□□ -0.81
VPS41-208ENST00000448833 FOXD4L1Q9NU39 408 aa9.99□□□□□ -0.81
VPS41-208ENST00000448833 WDR17Q8IZU2 1322 aa9.99□□□□□ -0.81
VPS41-208ENST00000448833 ABCC6O95255 1503 aa9.98□□□□□ -0.81
VPS41-208ENST00000448833 TRIM26Q12899 539 aaPredicted RBP9.98□□□□□ -0.81
VPS41-208ENST00000448833 CAMKK2Q96RR4 588 aa9.98□□□□□ -0.81
VPS41-208ENST00000448833 SBF2Q86WG5 1849 aa9.98□□□□□ -0.81
VPS41-208ENST00000448833 CSB-PGBD3P0DP91 1061 aa9.97□□□□□ -0.81
VPS41-208ENST00000448833 EZH2Q15910 746 aaKnown RBP9.97□□□□□ -0.81
VPS41-208ENST00000448833 TMC1Q8TDI8 760 aa9.97□□□□□ -0.81
VPS41-208ENST00000448833 CARD10Q9BWT7 1032 aa9.97□□□□□ -0.81
VPS41-208ENST00000448833 NINLQ9Y2I6 1382 aa9.97□□□□□ -0.81
VPS41-208ENST00000448833 OVOS2A0A0G2JMS6 1433 aa9.97□□□□□ -0.81
VPS41-208ENST00000448833 OVOS2A0A0J9YW53 1432 aa9.97□□□□□ -0.81
VPS41-208ENST00000448833 OVOS2Q6IE36 1432 aa9.97□□□□□ -0.81
VPS41-208ENST00000448833 WNK3Q9BYP7 1800 aa9.96□□□□□ -0.81
VPS41-208ENST00000448833 PSDA5PKW4 1024 aaPredicted RBP9.96□□□□□ -0.82
VPS41-208ENST00000448833 EXOC5O00471 708 aa9.96□□□□□ -0.82
VPS41-208ENST00000448833 PLSCR1O15162 318 aa9.96□□□□□ -0.82
VPS41-208ENST00000448833 USP31Q70CQ4 1352 aa9.96□□□□□ -0.82
VPS41-208ENST00000448833 CCDC7Q96M83 1385 aa9.96□□□□□ -0.82
VPS41-208ENST00000448833 USP54Q70EL1 1684 aa9.96□□□□□ -0.82
VPS41-208ENST00000448833 RGPD3A6NKT7 1758 aaPredicted RBP9.96□□□□□ -0.82
VPS41-208ENST00000448833 LTN1O94822 1766 aa9.96□□□□□ -0.82
VPS41-208ENST00000448833 RGPD4Q7Z3J3 1758 aa9.96□□□□□ -0.82
VPS41-208ENST00000448833 R3HDM1Q15032 1099 aaKnown RBP9.95□□□□□ -0.82
VPS41-208ENST00000448833 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.95□□□□□ -0.82
VPS41-208ENST00000448833 AXIN2Q9Y2T1 843 aa9.95□□□□□ -0.82
VPS41-208ENST00000448833 EDC4Q6P2E9 1401 aaKnown RBP9.95□□□□□ -0.82
VPS41-208ENST00000448833 RREB1Q92766 1687 aa9.95□□□□□ -0.82
VPS41-208ENST00000448833 KAT6BQ8WYB5 2073 aa9.94□□□□□ -0.82
VPS41-208ENST00000448833 BCL9O00512 1426 aa9.94□□□□□ -0.82
VPS41-208ENST00000448833 SOX12O15370 315 aa9.94□□□□□ -0.82
VPS41-208ENST00000448833 BCL11BQ9C0K0 894 aaPredicted RBP9.94□□□□□ -0.82
VPS41-208ENST00000448833 PEAK1Q9H792 1746 aa9.93□□□□□ -0.82
VPS41-208ENST00000448833 LRRC37A3O60309 1634 aa9.93□□□□□ -0.82
VPS41-208ENST00000448833 NFAT5O94916 1531 aa9.93□□□□□ -0.82
VPS41-208ENST00000448833 CDCA8Q53HL2 280 aa9.93□□□□□ -0.82
VPS41-208ENST00000448833 SLC12A5Q9H2X9 1139 aa9.93□□□□□ -0.82
VPS41-208ENST00000448833 TIMELESSQ9UNS1 1208 aa9.93□□□□□ -0.82
VPS41-208ENST00000448833 NUP188Q5SRE5 1749 aa9.93□□□□□ -0.82
VPS41-208ENST00000448833 FAM208AQ9UK61 1670 aaKnown RBP9.91□□□□□ -0.82
VPS41-208ENST00000448833 ST20-MTHFSA0A0A6YYL1 179 aa9.91□□□□□ -0.82
VPS41-208ENST00000448833 TMF1P82094 1093 aa9.91□□□□□ -0.82
VPS41-208ENST00000448833 NME9Q86XW9 330 aa9.91□□□□□ -0.82
VPS41-208ENST00000448833 NLRP2Q9NX02 1062 aa9.91□□□□□ -0.82
VPS41-208ENST00000448833 CD163L1Q9NR16 1453 aa9.91□□□□□ -0.82
VPS41-208ENST00000448833 ERBB3P21860 1342 aa9.9□□□□□ -0.82
VPS41-208ENST00000448833 IL2RBP14784 551 aa9.9□□□□□ -0.82
VPS41-208ENST00000448833 MARCH10Q8NA82 808 aaPredicted RBP9.9□□□□□ -0.82
VPS41-208ENST00000448833 COG3Q96JB2 828 aa9.9□□□□□ -0.82
VPS41-208ENST00000448833 A0A1W2PP64 1363 aa9.89□□□□□ -0.83
VPS41-208ENST00000448833 ANKRD24Q8TF21 1146 aa9.89□□□□□ -0.83
VPS41-208ENST00000448833 IP6K1Q92551 441 aa9.89□□□□□ -0.83
VPS41-208ENST00000448833 TESK2Q96S53 571 aa9.89□□□□□ -0.83
VPS41-208ENST00000448833 SPON1Q9HCB6 807 aa9.89□□□□□ -0.83
VPS41-208ENST00000448833 CLSPNQ9HAW4 1339 aa9.88□□□□□ -0.83
VPS41-208ENST00000448833 HMGB2P26583 209 aaKnown RBP9.88□□□□□ -0.83
VPS41-208ENST00000448833 TNS2Q63HR2 1409 aa9.88□□□□□ -0.83
VPS41-208ENST00000448833 KCNQ2O43526 872 aa9.87□□□□□ -0.83
VPS41-208ENST00000448833 PPP1R1BQ9UD71 204 aaPredicted RBP9.87□□□□□ -0.83
VPS41-208ENST00000448833 ANKRD36BQ8N2N9 1353 aa9.87□□□□□ -0.83
VPS41-208ENST00000448833 SLC4A2P04920 1241 aa9.86□□□□□ -0.83
VPS41-208ENST00000448833 AMPHP49418 695 aa9.86□□□□□ -0.83
VPS41-208ENST00000448833 NHSQ6T4R5 1651 aa9.86□□□□□ -0.83
VPS41-208ENST00000448833 TXNRD1Q16881 649 aa9.85□□□□□ -0.83
VPS41-208ENST00000448833 STK32BQ9NY57 414 aa9.85□□□□□ -0.83
VPS41-208ENST00000448833 USP47Q96K76 1375 aa9.85□□□□□ -0.83
VPS41-208ENST00000448833 CGNL1Q0VF96 1302 aa9.84□□□□□ -0.83
VPS41-208ENST00000448833 RTL1A6NKG5 1358 aa9.84□□□□□ -0.83
VPS41-208ENST00000448833 KIF20BQ96Q89 1820 aa9.84□□□□□ -0.83
VPS41-208ENST00000448833 SMG6Q86US8 1419 aaKnown RBP9.83□□□□□ -0.84
VPS41-208ENST00000448833 HOXC9P31274 260 aa9.83□□□□□ -0.84
VPS41-208ENST00000448833 SLC15A2Q16348 729 aa9.83□□□□□ -0.84
VPS41-208ENST00000448833 BTAF1O14981 1849 aa9.83□□□□□ -0.84
VPS41-208ENST00000448833 KIF24Q5T7B8 1368 aa9.83□□□□□ -0.84
VPS41-208ENST00000448833 MAP3K19Q56UN5 1328 aa9.82□□□□□ -0.84
VPS41-208ENST00000448833 FYB1O15117 783 aa9.82□□□□□ -0.84
VPS41-208ENST00000448833 SLC27A3Q5K4L6 730 aa9.82□□□□□ -0.84
VPS41-208ENST00000448833 PROM2Q8N271 834 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms