RNA–Protein interactions for RNA: ENST00000443561.3

PDLIM2-212, Transcript of PDZ and LIM domain 2, humanhuman

TSL 2 BASIC

Gene PDLIM2, Length 701 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-212ENST00000443561 TRPC5Q9UL62 973 aaPredicted RBP17.83■□□□□ 0.44
PDLIM2-212ENST00000443561 MAP2P11137 1827 aaKnown RBP17.82■□□□□ 0.44
PDLIM2-212ENST00000443561 VPS72Q15906 364 aa17.82■□□□□ 0.44
PDLIM2-212ENST00000443561 RBM6P78332 1123 aaKnown RBP17.8■□□□□ 0.44
PDLIM2-212ENST00000443561 KCNH5Q8NCM2 988 aa17.8■□□□□ 0.44
PDLIM2-212ENST00000443561 GJD4Q96KN9 370 aaPredicted RBP17.8■□□□□ 0.44
PDLIM2-212ENST00000443561 SPATA31A5Q5VU36 1347 aa17.79■□□□□ 0.44
PDLIM2-212ENST00000443561 SPATA31A7Q8IWB4 1347 aa17.79■□□□□ 0.44
PDLIM2-212ENST00000443561 PER1O15534 1290 aaPredicted RBP17.79■□□□□ 0.44
PDLIM2-212ENST00000443561 RXRBP28702 533 aa17.79■□□□□ 0.44
PDLIM2-212ENST00000443561 FAM208AQ9UK61 1670 aaKnown RBP17.79■□□□□ 0.44
PDLIM2-212ENST00000443561 MAP3K19Q56UN5 1328 aa17.78■□□□□ 0.44
PDLIM2-212ENST00000443561 ZBTB7CA1YPR0 619 aa17.77■□□□□ 0.44
PDLIM2-212ENST00000443561 AMER1Q5JTC6 1135 aaPredicted RBP17.77■□□□□ 0.44
PDLIM2-212ENST00000443561 LARP1Q6PKG0 1096 aaKnown RBP17.77■□□□□ 0.44
PDLIM2-212ENST00000443561 COG3Q96JB2 828 aa17.77■□□□□ 0.44
PDLIM2-212ENST00000443561 SPATA31A1Q5TZJ5 1347 aa17.76■□□□□ 0.43
PDLIM2-212ENST00000443561 PARP4Q9UKK3 1724 aaKnown RBP17.76■□□□□ 0.43
PDLIM2-212ENST00000443561 STRN4Q9NRL3 753 aa17.76■□□□□ 0.43
PDLIM2-212ENST00000443561 LRRC37A3O60309 1634 aa17.76■□□□□ 0.43
PDLIM2-212ENST00000443561 CGNL1Q0VF96 1302 aa17.75■□□□□ 0.43
PDLIM2-212ENST00000443561 RRS1Q15050 365 aaKnown RBP17.75■□□□□ 0.43
PDLIM2-212ENST00000443561 CRB1P82279 1406 aa17.74■□□□□ 0.43
PDLIM2-212ENST00000443561 ONECUT3O60422 494 aaPredicted RBP17.73■□□□□ 0.43
PDLIM2-212ENST00000443561 ERBB3P21860 1342 aa17.72■□□□□ 0.43
PDLIM2-212ENST00000443561 DISP2A7MBM2 1401 aa17.72■□□□□ 0.43
PDLIM2-212ENST00000443561 BLMP54132 1417 aaPredicted RBP17.72■□□□□ 0.43
PDLIM2-212ENST00000443561 SMG6Q86US8 1419 aaKnown RBP17.72■□□□□ 0.43
PDLIM2-212ENST00000443561 RTL1A6NKG5 1358 aa17.72■□□□□ 0.43
PDLIM2-212ENST00000443561 NSD2O96028 1365 aa17.72■□□□□ 0.43
PDLIM2-212ENST00000443561 WDR17Q8IZU2 1322 aa17.72■□□□□ 0.43
PDLIM2-212ENST00000443561 HOXC9P31274 260 aa17.71■□□□□ 0.43
PDLIM2-212ENST00000443561 EMILIN1Q9Y6C2 1016 aa17.71■□□□□ 0.43
PDLIM2-212ENST00000443561 SHANK3Q9BYB0 1731 aa17.71■□□□□ 0.43
PDLIM2-212ENST00000443561 ZEB1P37275 1124 aaPredicted RBP17.7■□□□□ 0.42
PDLIM2-212ENST00000443561 FAM98CQ17RN3 349 aaKnown RBP17.7■□□□□ 0.42
PDLIM2-212ENST00000443561 IP6K1Q92551 441 aa17.7■□□□□ 0.42
PDLIM2-212ENST00000443561 EP400Q96L91 3159 aa17.7■□□□□ 0.42
PDLIM2-212ENST00000443561 SEPT12Q8IYM1 358 aa17.68■□□□□ 0.42
PDLIM2-212ENST00000443561 CCDC9Q9Y3X0 531 aaKnown RBP17.68■□□□□ 0.42
PDLIM2-212ENST00000443561 NPC1L1Q9UHC9 1359 aa17.67■□□□□ 0.42
PDLIM2-212ENST00000443561 ANKRD24Q8TF21 1146 aa17.67■□□□□ 0.42
PDLIM2-212ENST00000443561 POLKQ9UBT6 870 aa17.67■□□□□ 0.42
PDLIM2-212ENST00000443561 RGPD1P0DJD0 1748 aa17.67■□□□□ 0.42
PDLIM2-212ENST00000443561 NCAPD2Q15021 1401 aa17.66■□□□□ 0.42
PDLIM2-212ENST00000443561 EVA1CP58658 441 aa17.66■□□□□ 0.42
PDLIM2-212ENST00000443561 BARGINQ6ZT62 677 aa17.66■□□□□ 0.42
PDLIM2-212ENST00000443561 USP35Q9P2H5 1018 aa17.66■□□□□ 0.42
PDLIM2-212ENST00000443561 KNSTRNQ9Y448 316 aa17.66■□□□□ 0.42
PDLIM2-212ENST00000443561 INSRP06213 1382 aa17.66■□□□□ 0.42
PDLIM2-212ENST00000443561 FLT4P35916 1363 aa17.66■□□□□ 0.42
PDLIM2-212ENST00000443561 KIF24Q5T7B8 1368 aa17.66■□□□□ 0.42
PDLIM2-212ENST00000443561 HSP90AB2PQ58FF8 381 aa17.65■□□□□ 0.42
PDLIM2-212ENST00000443561 SBF2Q86WG5 1849 aa17.64■□□□□ 0.41
PDLIM2-212ENST00000443561 TNNT2P45379 298 aaPredicted RBP17.64■□□□□ 0.41
PDLIM2-212ENST00000443561 TCP11L2Q8N4U5 519 aa17.64■□□□□ 0.41
PDLIM2-212ENST00000443561 CARD10Q9BWT7 1032 aa17.64■□□□□ 0.41
PDLIM2-212ENST00000443561 TNS1Q9HBL0 1735 aaKnown RBP17.64■□□□□ 0.41
PDLIM2-212ENST00000443561 TOM1L2Q6ZVM7 507 aa17.63■□□□□ 0.41
PDLIM2-212ENST00000443561 COL3A1P02461 1466 aaPredicted RBP17.63■□□□□ 0.41
PDLIM2-212ENST00000443561 MEGF6O75095 1541 aa17.62■□□□□ 0.41
PDLIM2-212ENST00000443561 AMPHP49418 695 aa17.62■□□□□ 0.41
PDLIM2-212ENST00000443561 CC2D1BQ5T0F9 858 aaKnown RBP17.61■□□□□ 0.41
PDLIM2-212ENST00000443561 LTV1Q96GA3 475 aaPredicted RBP17.61■□□□□ 0.41
PDLIM2-212ENST00000443561 THRAP3Q9Y2W1 955 aaKnown RBP17.61■□□□□ 0.41
PDLIM2-212ENST00000443561 FAM182BQ5T319 152 aa17.6■□□□□ 0.41
PDLIM2-212ENST00000443561 MORC1Q86VD1 984 aa17.6■□□□□ 0.41
PDLIM2-212ENST00000443561 PKD1L3Q7Z443 1732 aa17.6■□□□□ 0.41
PDLIM2-212ENST00000443561 TNS2Q63HR2 1409 aa17.59■□□□□ 0.41
PDLIM2-212ENST00000443561 CSB-PGBD3P0DP91 1061 aa17.59■□□□□ 0.41
PDLIM2-212ENST00000443561 NBPF6Q5VWK0 638 aa17.59■□□□□ 0.41
PDLIM2-212ENST00000443561 NBPF4Q96M43 638 aa17.59■□□□□ 0.41
PDLIM2-212ENST00000443561 UPF1Q92900 1129 aaKnown RBP eCLIP17.58■□□□□ 0.44e-7■■■■■ 26.8
PDLIM2-212ENST00000443561 NLRP2Q9NX02 1062 aa17.58■□□□□ 0.4
PDLIM2-212ENST00000443561 KRT27Q7Z3Y8 459 aa17.57■□□□□ 0.4
PDLIM2-212ENST00000443561 USHBP1Q8N6Y0 703 aa17.57■□□□□ 0.4
PDLIM2-212ENST00000443561 EIF4A2Q14240 407 aaKnown RBP17.56■□□□□ 0.4
PDLIM2-212ENST00000443561 PPM1GO15355 546 aaPredicted RBP17.55■□□□□ 0.4
PDLIM2-212ENST00000443561 OVOS2A0A0G2JMS6 1433 aa17.55■□□□□ 0.4
PDLIM2-212ENST00000443561 PARD3Q8TEW0 1356 aa17.54■□□□□ 0.4
PDLIM2-212ENST00000443561 A0A0G2JS52 829 aa17.54■□□□□ 0.4
PDLIM2-212ENST00000443561 MYT1Q01538 1121 aa17.54■□□□□ 0.4
PDLIM2-212ENST00000443561 DDX10Q13206 875 aaKnown RBP17.54■□□□□ 0.4
PDLIM2-212ENST00000443561 CNGB1Q14028 1251 aaPredicted RBP17.54■□□□□ 0.4
PDLIM2-212ENST00000443561 TOGARAM1Q9Y4F4 1720 aa17.53■□□□□ 0.4
PDLIM2-212ENST00000443561 MARCH10Q8NA82 808 aaPredicted RBP17.53■□□□□ 0.4
PDLIM2-212ENST00000443561 EYA1Q99502 592 aa17.53■□□□□ 0.4
PDLIM2-212ENST00000443561 MTHFSP49914 203 aa17.52■□□□□ 0.4
PDLIM2-212ENST00000443561 DOT1LQ8TEK3 1739 aa17.52■□□□□ 0.39
PDLIM2-212ENST00000443561 NHSQ6T4R5 1651 aa17.52■□□□□ 0.39
PDLIM2-212ENST00000443561 IGSF1Q8N6C5 1336 aa17.51■□□□□ 0.39
PDLIM2-212ENST00000443561 IL2RBP14784 551 aa17.51■□□□□ 0.39
PDLIM2-212ENST00000443561 IL13P35225 146 aa17.5■□□□□ 0.39
PDLIM2-212ENST00000443561 BCL9O00512 1426 aa17.49■□□□□ 0.39
PDLIM2-212ENST00000443561 DDB1Q16531 1140 aa17.49■□□□□ 0.39
PDLIM2-212ENST00000443561 PTF1AQ7RTS3 328 aa17.49■□□□□ 0.39
PDLIM2-212ENST00000443561 PPP2R1AP30153 589 aa17.48■□□□□ 0.39
PDLIM2-212ENST00000443561 CDCA7Q9BWT1 371 aaPredicted RBP17.48■□□□□ 0.39
PDLIM2-212ENST00000443561 ZNF316A6NFI3 1004 aaPredicted RBP17.47■□□□□ 0.39
PDLIM2-212ENST00000443561 AEBP1Q8IUX7 1158 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms