RNA–Protein interactions for RNA: ENST00000440514.1

CPSF4-205, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 578 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-205ENST00000440514 PANK3Q9H999 370 aa24.91■■□□□ 1.58
CPSF4-205ENST00000440514 ANKRD26Q9UPS8 1709 aa24.91■■□□□ 1.58
CPSF4-205ENST00000440514 SPATA31A5Q5VU36 1347 aa24.9■■□□□ 1.58
CPSF4-205ENST00000440514 SPATA31A7Q8IWB4 1347 aa24.9■■□□□ 1.58
CPSF4-205ENST00000440514 WASHC2AQ641Q2 1341 aa24.89■■□□□ 1.58
CPSF4-205ENST00000440514 AXIN2Q9Y2T1 843 aa24.89■■□□□ 1.58
CPSF4-205ENST00000440514 EVA1CP58658 441 aa24.88■■□□□ 1.57
CPSF4-205ENST00000440514 LARP1Q6PKG0 1096 aaKnown RBP24.88■■□□□ 1.57
CPSF4-205ENST00000440514 CGNL1Q0VF96 1302 aa24.87■■□□□ 1.57
CPSF4-205ENST00000440514 THSD7AQ9UPZ6 1657 aa24.87■■□□□ 1.57
CPSF4-205ENST00000440514 SPATA31A1Q5TZJ5 1347 aa24.86■■□□□ 1.57
CPSF4-205ENST00000440514 BRWD3Q6RI45 1802 aa24.86■■□□□ 1.57
CPSF4-205ENST00000440514 FBLN1P23142 703 aa24.86■■□□□ 1.57
CPSF4-205ENST00000440514 FAM98CQ17RN3 349 aaKnown RBP24.84■■□□□ 1.57
CPSF4-205ENST00000440514 CRB1P82279 1406 aa24.84■■□□□ 1.57
CPSF4-205ENST00000440514 MAP3K19Q56UN5 1328 aa24.84■■□□□ 1.57
CPSF4-205ENST00000440514 USP35Q9P2H5 1018 aa24.83■■□□□ 1.57
CPSF4-205ENST00000440514 PEAK1Q9H792 1746 aa24.82■■□□□ 1.56
CPSF4-205ENST00000440514 WDR17Q8IZU2 1322 aa24.82■■□□□ 1.56
CPSF4-205ENST00000440514 WNK3Q9BYP7 1800 aa24.82■■□□□ 1.56
CPSF4-205ENST00000440514 A0A0G2JS52 829 aa24.81■■□□□ 1.56
CPSF4-205ENST00000440514 MYT1Q01538 1121 aa24.81■■□□□ 1.56
CPSF4-205ENST00000440514 RRS1Q15050 365 aaKnown RBP24.81■■□□□ 1.56
CPSF4-205ENST00000440514 SEPT12Q8IYM1 358 aa24.81■■□□□ 1.56
CPSF4-205ENST00000440514 BLMP54132 1417 aaPredicted RBP24.79■■□□□ 1.56
CPSF4-205ENST00000440514 ONECUT3O60422 494 aaPredicted RBP24.78■■□□□ 1.56
CPSF4-205ENST00000440514 CSB-PGBD3P0DP91 1061 aa24.78■■□□□ 1.56
CPSF4-205ENST00000440514 TOM1L2Q6ZVM7 507 aa24.78■■□□□ 1.56
CPSF4-205ENST00000440514 ERBB3P21860 1342 aa24.78■■□□□ 1.56
CPSF4-205ENST00000440514 RTL1A6NKG5 1358 aa24.78■■□□□ 1.56
CPSF4-205ENST00000440514 NSD2O96028 1365 aa24.78■■□□□ 1.56
CPSF4-205ENST00000440514 ZEB1P37275 1124 aaPredicted RBP24.77■■□□□ 1.56
CPSF4-205ENST00000440514 FAM208AQ9UK61 1670 aaKnown RBP24.76■■□□□ 1.55
CPSF4-205ENST00000440514 HOXC9P31274 260 aa24.76■■□□□ 1.55
CPSF4-205ENST00000440514 AMPHP49418 695 aa24.76■■□□□ 1.55
CPSF4-205ENST00000440514 TCP11L2Q8N4U5 519 aa24.76■■□□□ 1.55
CPSF4-205ENST00000440514 IP6K1Q92551 441 aa24.76■■□□□ 1.55
CPSF4-205ENST00000440514 KNSTRNQ9Y448 316 aa24.76■■□□□ 1.55
CPSF4-205ENST00000440514 ANKRD24Q8TF21 1146 aa24.75■■□□□ 1.55
CPSF4-205ENST00000440514 PARP4Q9UKK3 1724 aaKnown RBP24.75■■□□□ 1.55
CPSF4-205ENST00000440514 LRRC37A3O60309 1634 aa24.73■■□□□ 1.55
CPSF4-205ENST00000440514 TNNT2P45379 298 aaPredicted RBP24.73■■□□□ 1.55
CPSF4-205ENST00000440514 BARGINQ6ZT62 677 aa24.73■■□□□ 1.55
CPSF4-205ENST00000440514 EMILIN1Q9Y6C2 1016 aa24.73■■□□□ 1.55
CPSF4-205ENST00000440514 MAP2P11137 1827 aaKnown RBP24.72■■□□□ 1.55
CPSF4-205ENST00000440514 LTV1Q96GA3 475 aaPredicted RBP24.72■■□□□ 1.55
CPSF4-205ENST00000440514 RGPD2P0DJD1 1756 aa24.72■■□□□ 1.55
CPSF4-205ENST00000440514 FLT4P35916 1363 aa24.71■■□□□ 1.55
CPSF4-205ENST00000440514 AMER1Q5JTC6 1135 aaPredicted RBP24.71■■□□□ 1.55
CPSF4-205ENST00000440514 THRAP3Q9Y2W1 955 aaKnown RBP24.71■■□□□ 1.55
CPSF4-205ENST00000440514 PER1O15534 1290 aaPredicted RBP24.7■■□□□ 1.54
CPSF4-205ENST00000440514 KRT27Q7Z3Y8 459 aa24.7■■□□□ 1.54
CPSF4-205ENST00000440514 CARD10Q9BWT7 1032 aa24.7■■□□□ 1.54
CPSF4-205ENST00000440514 NLRP2Q9NX02 1062 aa24.7■■□□□ 1.54
CPSF4-205ENST00000440514 DISP2A7MBM2 1401 aa24.69■■□□□ 1.54
CPSF4-205ENST00000440514 KIF24Q5T7B8 1368 aa24.68■■□□□ 1.54
CPSF4-205ENST00000440514 MORC1Q86VD1 984 aa24.67■■□□□ 1.54
CPSF4-205ENST00000440514 UPF1Q92900 1129 aaKnown RBP eCLIP24.67■■□□□ 1.54
CPSF4-205ENST00000440514 INSRP06213 1382 aa24.67■■□□□ 1.54
CPSF4-205ENST00000440514 PPM1GO15355 546 aaPredicted RBP24.66■■□□□ 1.54
CPSF4-205ENST00000440514 HSP90AB2PQ58FF8 381 aa24.66■■□□□ 1.54
CPSF4-205ENST00000440514 SMG6Q86US8 1419 aaKnown RBP24.66■■□□□ 1.54
CPSF4-205ENST00000440514 FAM182BQ5T319 152 aa24.65■■□□□ 1.54
CPSF4-205ENST00000440514 POLKQ9UBT6 870 aa24.65■■□□□ 1.54
CPSF4-205ENST00000440514 CC2D1BQ5T0F9 858 aaKnown RBP24.64■■□□□ 1.54
CPSF4-205ENST00000440514 CNGB1Q14028 1251 aaPredicted RBP24.62■■□□□ 1.53
CPSF4-205ENST00000440514 NPC1L1Q9UHC9 1359 aa24.61■■□□□ 1.53
CPSF4-205ENST00000440514 EP400Q96L91 3159 aa24.6■■□□□ 1.53
CPSF4-205ENST00000440514 TNS2Q63HR2 1409 aa24.6■■□□□ 1.53
CPSF4-205ENST00000440514 PDE3BQ13370 1112 aa24.59■■□□□ 1.53
CPSF4-205ENST00000440514 CDCA7Q9BWT1 371 aaPredicted RBP24.59■■□□□ 1.53
CPSF4-205ENST00000440514 DDB1Q16531 1140 aa24.58■■□□□ 1.53
CPSF4-205ENST00000440514 USHBP1Q8N6Y0 703 aa24.58■■□□□ 1.53
CPSF4-205ENST00000440514 NBPF6Q5VWK0 638 aa24.57■■□□□ 1.52
CPSF4-205ENST00000440514 NBPF4Q96M43 638 aa24.57■■□□□ 1.52
CPSF4-205ENST00000440514 MEGF6O75095 1541 aa24.56■■□□□ 1.52
CPSF4-205ENST00000440514 IL2RBP14784 551 aa24.56■■□□□ 1.52
CPSF4-205ENST00000440514 RGPD1P0DJD0 1748 aa24.55■■□□□ 1.52
CPSF4-205ENST00000440514 TNS1Q9HBL0 1735 aaKnown RBP24.55■■□□□ 1.52
CPSF4-205ENST00000440514 OVOS2A0A0G2JMS6 1433 aa24.53■■□□□ 1.52
CPSF4-205ENST00000440514 SHANK3Q9BYB0 1731 aa24.52■■□□□ 1.52
CPSF4-205ENST00000440514 EIF4A2Q14240 407 aaKnown RBP24.52■■□□□ 1.52
CPSF4-205ENST00000440514 NCAPD2Q15021 1401 aa24.52■■□□□ 1.52
CPSF4-205ENST00000440514 MARCH10Q8NA82 808 aaPredicted RBP24.51■■□□□ 1.51
CPSF4-205ENST00000440514 EXOC5O00471 708 aa24.5■■□□□ 1.51
CPSF4-205ENST00000440514 FAM196AQ6ZSG2 479 aa24.5■■□□□ 1.51
CPSF4-205ENST00000440514 DDX10Q13206 875 aaKnown RBP24.48■■□□□ 1.51
CPSF4-205ENST00000440514 SBF2Q86WG5 1849 aa24.48■■□□□ 1.51
CPSF4-205ENST00000440514 EYA1Q99502 592 aa24.48■■□□□ 1.51
CPSF4-205ENST00000440514 MTHFSP49914 203 aa24.47■■□□□ 1.51
CPSF4-205ENST00000440514 CCDC125Q86Z20 511 aa24.46■■□□□ 1.51
CPSF4-205ENST00000440514 RAPGEF4Q8WZA2 1011 aa24.46■■□□□ 1.51
CPSF4-205ENST00000440514 PKD1L3Q7Z443 1732 aa24.46■■□□□ 1.51
CPSF4-205ENST00000440514 TRIM37O94972 964 aa24.45■■□□□ 1.5
CPSF4-205ENST00000440514 COL3A1P02461 1466 aaPredicted RBP24.45■■□□□ 1.5
CPSF4-205ENST00000440514 IGSF1Q8N6C5 1336 aa24.44■■□□□ 1.5
CPSF4-205ENST00000440514 SF3B2Q13435 895 aaKnown RBP24.44■■□□□ 1.5
CPSF4-205ENST00000440514 TATP17735 454 aaPredicted RBP24.43■■□□□ 1.5
CPSF4-205ENST00000440514 DEFB132Q7Z7B7 95 aa24.42■■□□□ 1.5
CPSF4-205ENST00000440514 BCL9O00512 1426 aa24.42■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms