RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 LTN1O94822 1766 aa17.19■□□□□ 0.34
PTPRF-208ENST00000437607 CASZ1Q86V15 1759 aa17.19■□□□□ 0.34
PTPRF-208ENST00000437607 USP54Q70EL1 1684 aa17.19■□□□□ 0.34
PTPRF-208ENST00000437607 OVOS2A0A0G2JMS6 1433 aa17.17■□□□□ 0.34
PTPRF-208ENST00000437607 OVOS2A0A0J9YW53 1432 aa17.17■□□□□ 0.34
PTPRF-208ENST00000437607 ZBTB7CA1YPR0 619 aa17.17■□□□□ 0.34
PTPRF-208ENST00000437607 OVOS2Q6IE36 1432 aa17.17■□□□□ 0.34
PTPRF-208ENST00000437607 AXIN2Q9Y2T1 843 aa17.17■□□□□ 0.34
PTPRF-208ENST00000437607 NFAT5O94916 1531 aa17.16■□□□□ 0.34
PTPRF-208ENST00000437607 CPSF1Q10570 1443 aaKnown RBP17.16■□□□□ 0.34
PTPRF-208ENST00000437607 EVC2Q86UK5 1308 aa17.15■□□□□ 0.34
PTPRF-208ENST00000437607 PTF1AQ7RTS3 328 aa17.14■□□□□ 0.33
PTPRF-208ENST00000437607 KAT6BQ8WYB5 2073 aa17.13■□□□□ 0.33
PTPRF-208ENST00000437607 TTC21BQ7Z4L5 1316 aa17.13■□□□□ 0.33
PTPRF-208ENST00000437607 WDR17Q8IZU2 1322 aa17.13■□□□□ 0.33
PTPRF-208ENST00000437607 NBPF14Q5TI25 921 aa17.12■□□□□ 0.33
PTPRF-208ENST00000437607 TOM1L2Q6ZVM7 507 aa17.12■□□□□ 0.33
PTPRF-208ENST00000437607 ARHGEF25Q86VW2 580 aa17.12■□□□□ 0.33
PTPRF-208ENST00000437607 DDB1Q16531 1140 aa17.11■□□□□ 0.33
PTPRF-208ENST00000437607 MARCH10Q8NA82 808 aaPredicted RBP17.11■□□□□ 0.33
PTPRF-208ENST00000437607 ROCK2O75116 1388 aaKnown RBP17.11■□□□□ 0.33
PTPRF-208ENST00000437607 ABCC6O95255 1503 aa17.11■□□□□ 0.33
PTPRF-208ENST00000437607 C11orf95C9JLR9 678 aaPredicted RBP17.1■□□□□ 0.33
PTPRF-208ENST00000437607 PLSCR1O15162 318 aa17.1■□□□□ 0.33
PTPRF-208ENST00000437607 BCL9O00512 1426 aa17.1■□□□□ 0.33
PTPRF-208ENST00000437607 NHSQ6T4R5 1651 aa17.1■□□□□ 0.33
PTPRF-208ENST00000437607 ZNF692Q9BU19 519 aaPredicted RBP17.09■□□□□ 0.33
PTPRF-208ENST00000437607 TTC21AQ8NDW8 1320 aa17.09■□□□□ 0.33
PTPRF-208ENST00000437607 MYOM1P52179 1685 aa17.08■□□□□ 0.32
PTPRF-208ENST00000437607 CD163L1Q9NR16 1453 aa17.08■□□□□ 0.32
PTPRF-208ENST00000437607 KCNH5Q8NCM2 988 aa17.08■□□□□ 0.32
PTPRF-208ENST00000437607 ANO8Q9HCE9 1232 aaPredicted RBP17.08■□□□□ 0.32
PTPRF-208ENST00000437607 BTAF1O14981 1849 aa17.07■□□□□ 0.32
PTPRF-208ENST00000437607 KTN1Q86UP2 1357 aaKnown RBP17.07■□□□□ 0.32
PTPRF-208ENST00000437607 SOX12O15370 315 aa17.07■□□□□ 0.32
PTPRF-208ENST00000437607 PROM2Q8N271 834 aa17.07■□□□□ 0.32
PTPRF-208ENST00000437607 CARD10Q9BWT7 1032 aa17.07■□□□□ 0.32
PTPRF-208ENST00000437607 BCL11BQ9C0K0 894 aaPredicted RBP17.07■□□□□ 0.32
PTPRF-208ENST00000437607 KCNQ2O43526 872 aa17.06■□□□□ 0.32
PTPRF-208ENST00000437607 CDCA7Q9BWT1 371 aaPredicted RBP17.05■□□□□ 0.32
PTPRF-208ENST00000437607 PDGFDQ9GZP0 370 aaPredicted RBP17.05■□□□□ 0.32
PTPRF-208ENST00000437607 SPON1Q9HCB6 807 aa17.05■□□□□ 0.32
PTPRF-208ENST00000437607 RGPD2P0DJD1 1756 aa17.05■□□□□ 0.32
PTPRF-208ENST00000437607 SBNO2Q9Y2G9 1366 aa17.04■□□□□ 0.32
PTPRF-208ENST00000437607 TNS2Q63HR2 1409 aa17.04■□□□□ 0.32
PTPRF-208ENST00000437607 USP31Q70CQ4 1352 aa17.03■□□□□ 0.32
PTPRF-208ENST00000437607 UTRNP46939 3433 aa17.03■□□□□ 0.32
PTPRF-208ENST00000437607 PAPPAQ13219 1627 aa17.03■□□□□ 0.32
PTPRF-208ENST00000437607 CSB-PGBD3P0DP91 1061 aa17.02■□□□□ 0.32
PTPRF-208ENST00000437607 CCDC7Q96M83 1385 aa17.02■□□□□ 0.31
PTPRF-208ENST00000437607 NINLQ9Y2I6 1382 aa17.02■□□□□ 0.31
PTPRF-208ENST00000437607 FAM208AQ9UK61 1670 aaKnown RBP17.01■□□□□ 0.31
PTPRF-208ENST00000437607 CHD4Q14839 1912 aa17.01■□□□□ 0.31
PTPRF-208ENST00000437607 EXOC5O00471 708 aa17■□□□□ 0.31
PTPRF-208ENST00000437607 NME9Q86XW9 330 aa17■□□□□ 0.31
PTPRF-208ENST00000437607 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17■□□□□ 0.31
PTPRF-208ENST00000437607 SHANK3Q9BYB0 1731 aa17■□□□□ 0.31
PTPRF-208ENST00000437607 PPP1R1BQ9UD71 204 aaPredicted RBP17■□□□□ 0.31
PTPRF-208ENST00000437607 TUBGCP6Q96RT7 1819 aa17■□□□□ 0.31
PTPRF-208ENST00000437607 QSER1Q2KHR3 1735 aa16.99■□□□□ 0.31
PTPRF-208ENST00000437607 ERBB3P21860 1342 aa16.98■□□□□ 0.31
PTPRF-208ENST00000437607 TXNRD1Q16881 649 aa16.98■□□□□ 0.31
PTPRF-208ENST00000437607 COL24A1Q17RW2 1714 aa16.96■□□□□ 0.31
PTPRF-208ENST00000437607 ZBTB7AO95365 584 aa16.96■□□□□ 0.31
PTPRF-208ENST00000437607 YY1P25490 414 aa16.96■□□□□ 0.31
PTPRF-208ENST00000437607 PTGER2P43116 358 aa16.96■□□□□ 0.31
PTPRF-208ENST00000437607 CARD11Q9BXL7 1154 aa16.96■□□□□ 0.31
PTPRF-208ENST00000437607 SLC12A5Q9H2X9 1139 aa16.96■□□□□ 0.31
PTPRF-208ENST00000437607 EDC4Q6P2E9 1401 aaKnown RBP16.96■□□□□ 0.3
PTPRF-208ENST00000437607 USP47Q96K76 1375 aa16.95■□□□□ 0.3
PTPRF-208ENST00000437607 SLC15A2Q16348 729 aa16.95■□□□□ 0.3
PTPRF-208ENST00000437607 DOT1LQ8TEK3 1739 aa16.95■□□□□ 0.3
PTPRF-208ENST00000437607 A0A1W2PP64 1363 aa16.94■□□□□ 0.3
PTPRF-208ENST00000437607 LY75O60449 1722 aa16.94■□□□□ 0.3
PTPRF-208ENST00000437607 TMC1Q8TDI8 760 aa16.94■□□□□ 0.3
PTPRF-208ENST00000437607 ACSBG1Q96GR2 724 aa16.94■□□□□ 0.3
PTPRF-208ENST00000437607 EIF4G2P78344 907 aaKnown RBP eCLIP16.93■□□□□ 0.35e-7■■■■■ 27
PTPRF-208ENST00000437607 ANKRD24Q8TF21 1146 aa16.93■□□□□ 0.3
PTPRF-208ENST00000437607 NLRP2Q9NX02 1062 aa16.93■□□□□ 0.3
PTPRF-208ENST00000437607 STK32BQ9NY57 414 aa16.93■□□□□ 0.3
PTPRF-208ENST00000437607 IL2RBP14784 551 aa16.92■□□□□ 0.3
PTPRF-208ENST00000437607 ATF5Q9Y2D1 282 aaPredicted RBP16.92■□□□□ 0.3
PTPRF-208ENST00000437607 HDGFL2Q7Z4V5 671 aaPredicted RBP16.91■□□□□ 0.3
PTPRF-208ENST00000437607 SGIP1Q9BQI5 828 aa16.91■□□□□ 0.3
PTPRF-208ENST00000437607 KIF20BQ96Q89 1820 aa16.89■□□□□ 0.29
PTPRF-208ENST00000437607 GOLGB1Q14789 3259 aaKnown RBP16.88■□□□□ 0.29
PTPRF-208ENST00000437607 HSPA5P11021 654 aaKnown RBP16.88■□□□□ 0.29
PTPRF-208ENST00000437607 PUS7Q96PZ0 661 aaKnown RBP16.88■□□□□ 0.29
PTPRF-208ENST00000437607 IP6K1Q92551 441 aa16.87■□□□□ 0.29
PTPRF-208ENST00000437607 TESK2Q96S53 571 aa16.87■□□□□ 0.29
PTPRF-208ENST00000437607 MTFR1LQ9H019 292 aa16.87■□□□□ 0.29
PTPRF-208ENST00000437607 LRRC4BQ9NT99 713 aa16.87■□□□□ 0.29
PTPRF-208ENST00000437607 TERF2IPQ9NYB0 399 aa16.87■□□□□ 0.29
PTPRF-208ENST00000437607 DCAF8L1A6NGE4 600 aa16.86■□□□□ 0.29
PTPRF-208ENST00000437607 ZNF827Q17R98 1081 aa16.86■□□□□ 0.29
PTPRF-208ENST00000437607 FHDC1Q9C0D6 1143 aaPredicted RBP16.86■□□□□ 0.29
PTPRF-208ENST00000437607 TAF1LQ8IZX4 1826 aa16.85■□□□□ 0.29
PTPRF-208ENST00000437607 ZNF316A6NFI3 1004 aaPredicted RBP16.85■□□□□ 0.29
PTPRF-208ENST00000437607 SYT17Q9BSW7 474 aa16.85■□□□□ 0.29
PTPRF-208ENST00000437607 FBLN1P23142 703 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms