RNA–Protein interactions for RNA: ENST00000434274.2

LIMS1-209, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 3

Gene LIMS1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-209ENST00000434274 CDCA7Q9BWT1 371 aaPredicted RBP20.8■□□□□ 0.92
LIMS1-209ENST00000434274 ANKRD36BQ8N2N9 1353 aa20.8■□□□□ 0.92
LIMS1-209ENST00000434274 WDR17Q8IZU2 1322 aa20.79■□□□□ 0.92
LIMS1-209ENST00000434274 WNK3Q9BYP7 1800 aa20.79■□□□□ 0.92
LIMS1-209ENST00000434274 BAG6P46379 1132 aa20.79■□□□□ 0.92
LIMS1-209ENST00000434274 ZRANB1Q9UGI0 708 aa20.79■□□□□ 0.92
LIMS1-209ENST00000434274 DISP2A7MBM2 1401 aa20.78■□□□□ 0.92
LIMS1-209ENST00000434274 ZBTB7CA1YPR0 619 aa20.78■□□□□ 0.92
LIMS1-209ENST00000434274 FAM196AQ6ZSG2 479 aa20.78■□□□□ 0.92
LIMS1-209ENST00000434274 SLC12A5Q9H2X9 1139 aa20.78■□□□□ 0.92
LIMS1-209ENST00000434274 PDE3BQ13370 1112 aa20.77■□□□□ 0.92
LIMS1-209ENST00000434274 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.77■□□□□ 0.92
LIMS1-209ENST00000434274 USP35Q9P2H5 1018 aa20.77■□□□□ 0.92
LIMS1-209ENST00000434274 OVOS2A0A0J9YW53 1432 aa20.77■□□□□ 0.91
LIMS1-209ENST00000434274 OVOS2Q6IE36 1432 aa20.77■□□□□ 0.91
LIMS1-209ENST00000434274 LTN1O94822 1766 aa20.77■□□□□ 0.91
LIMS1-209ENST00000434274 TOM1L2Q6ZVM7 507 aa20.76■□□□□ 0.91
LIMS1-209ENST00000434274 CCER1Q8TC90 406 aaPredicted RBP20.76■□□□□ 0.91
LIMS1-209ENST00000434274 CCDC7Q96M83 1385 aa20.75■□□□□ 0.91
LIMS1-209ENST00000434274 FAM208AQ9UK61 1670 aaKnown RBP20.75■□□□□ 0.91
LIMS1-209ENST00000434274 PARD3Q8TEW0 1356 aa20.74■□□□□ 0.91
LIMS1-209ENST00000434274 TNS1Q9HBL0 1735 aaKnown RBP20.74■□□□□ 0.91
LIMS1-209ENST00000434274 RGPD5Q99666 1765 aa20.73■□□□□ 0.91
LIMS1-209ENST00000434274 NME9Q86XW9 330 aa20.73■□□□□ 0.91
LIMS1-209ENST00000434274 LRRC37A3O60309 1634 aa20.73■□□□□ 0.91
LIMS1-209ENST00000434274 OVOS2A0A0G2JMS6 1433 aa20.72■□□□□ 0.91
LIMS1-209ENST00000434274 CSB-PGBD3P0DP91 1061 aa20.72■□□□□ 0.91
LIMS1-209ENST00000434274 CARD10Q9BWT7 1032 aa20.72■□□□□ 0.91
LIMS1-209ENST00000434274 COG3Q96JB2 828 aa20.71■□□□□ 0.91
LIMS1-209ENST00000434274 SOX12O15370 315 aa20.7■□□□□ 0.9
LIMS1-209ENST00000434274 KIF20BQ96Q89 1820 aa20.69■□□□□ 0.9
LIMS1-209ENST00000434274 DDB1Q16531 1140 aa20.68■□□□□ 0.9
LIMS1-209ENST00000434274 AXIN2Q9Y2T1 843 aa20.68■□□□□ 0.9
LIMS1-209ENST00000434274 ERBB3P21860 1342 aa20.68■□□□□ 0.9
LIMS1-209ENST00000434274 RTL1A6NKG5 1358 aa20.68■□□□□ 0.9
LIMS1-209ENST00000434274 MYOM1P52179 1685 aa20.67■□□□□ 0.9
LIMS1-209ENST00000434274 BCL9O00512 1426 aa20.67■□□□□ 0.9
LIMS1-209ENST00000434274 RGPD3A6NKT7 1758 aaPredicted RBP20.66■□□□□ 0.9
LIMS1-209ENST00000434274 RGPD4Q7Z3J3 1758 aa20.66■□□□□ 0.9
LIMS1-209ENST00000434274 PEAK1Q9H792 1746 aa20.65■□□□□ 0.9
LIMS1-209ENST00000434274 DEFB132Q7Z7B7 95 aa20.65■□□□□ 0.9
LIMS1-209ENST00000434274 TNS2Q63HR2 1409 aa20.64■□□□□ 0.89
LIMS1-209ENST00000434274 EIF4G2P78344 907 aaKnown RBP eCLIP20.64■□□□□ 0.89
LIMS1-209ENST00000434274 KIF24Q5T7B8 1368 aa20.63■□□□□ 0.89
LIMS1-209ENST00000434274 TRIM37O94972 964 aa20.62■□□□□ 0.89
LIMS1-209ENST00000434274 IP6K1Q92551 441 aa20.62■□□□□ 0.89
LIMS1-209ENST00000434274 SMG6Q86US8 1419 aaKnown RBP20.61■□□□□ 0.89
LIMS1-209ENST00000434274 FAM182BQ5T319 152 aa20.61■□□□□ 0.89
LIMS1-209ENST00000434274 SBF2Q86WG5 1849 aa20.6■□□□□ 0.89
LIMS1-209ENST00000434274 ANKRD24Q8TF21 1146 aa20.6■□□□□ 0.89
LIMS1-209ENST00000434274 NLRP2Q9NX02 1062 aa20.6■□□□□ 0.89
LIMS1-209ENST00000434274 RREB1Q92766 1687 aa20.6■□□□□ 0.89
LIMS1-209ENST00000434274 EXOC5O00471 708 aa20.59■□□□□ 0.89
LIMS1-209ENST00000434274 APBA3O96018 575 aa20.58■□□□□ 0.89
LIMS1-209ENST00000434274 AMPHP49418 695 aa20.58■□□□□ 0.89
LIMS1-209ENST00000434274 FYB1O15117 783 aa20.57■□□□□ 0.88
LIMS1-209ENST00000434274 IL2RBP14784 551 aa20.57■□□□□ 0.88
LIMS1-209ENST00000434274 EN1Q05925 392 aaPredicted RBP20.57■□□□□ 0.88
LIMS1-209ENST00000434274 NSD3Q9BZ95 1437 aa20.57■□□□□ 0.88
LIMS1-209ENST00000434274 LRP5O75197 1615 aa20.56■□□□□ 0.88
LIMS1-209ENST00000434274 CGNL1Q0VF96 1302 aa20.56■□□□□ 0.88
LIMS1-209ENST00000434274 MAP3K19Q56UN5 1328 aa20.56■□□□□ 0.88
LIMS1-209ENST00000434274 CAMKK2Q96RR4 588 aa20.55■□□□□ 0.88
LIMS1-209ENST00000434274 HOXC9P31274 260 aa20.54■□□□□ 0.88
LIMS1-209ENST00000434274 BCL11BQ9C0K0 894 aaPredicted RBP20.54■□□□□ 0.88
LIMS1-209ENST00000434274 FLT4P35916 1363 aa20.54■□□□□ 0.88
LIMS1-209ENST00000434274 NUP188Q5SRE5 1749 aa20.53■□□□□ 0.88
LIMS1-209ENST00000434274 ANKRD26Q9UPS8 1709 aa20.53■□□□□ 0.88
LIMS1-209ENST00000434274 GGNBP2Q9H3C7 697 aa20.53■□□□□ 0.88
LIMS1-209ENST00000434274 NHSQ6T4R5 1651 aa20.52■□□□□ 0.88
LIMS1-209ENST00000434274 PLSCR1O15162 318 aa20.52■□□□□ 0.88
LIMS1-209ENST00000434274 NBPF14Q5TI25 921 aa20.52■□□□□ 0.88
LIMS1-209ENST00000434274 MARCH10Q8NA82 808 aaPredicted RBP20.52■□□□□ 0.88
LIMS1-209ENST00000434274 NSD2O96028 1365 aa20.51■□□□□ 0.87
LIMS1-209ENST00000434274 INSRP06213 1382 aa20.51■□□□□ 0.87
LIMS1-209ENST00000434274 HSPA5P11021 654 aaKnown RBP20.51■□□□□ 0.87
LIMS1-209ENST00000434274 EZH2Q15910 746 aaKnown RBP20.5■□□□□ 0.87
LIMS1-209ENST00000434274 CARD14Q9BXL6 1004 aa20.48■□□□□ 0.87
LIMS1-209ENST00000434274 LTV1Q96GA3 475 aaPredicted RBP20.46■□□□□ 0.87
LIMS1-209ENST00000434274 RRS1Q15050 365 aaKnown RBP20.45■□□□□ 0.86
LIMS1-209ENST00000434274 POLR3GLQ9BT43 218 aa20.45■□□□□ 0.86
LIMS1-209ENST00000434274 RAPGEF4Q8WZA2 1011 aa20.43■□□□□ 0.86
LIMS1-209ENST00000434274 PLEKHG2Q9H7P9 1386 aa20.43■□□□□ 0.86
LIMS1-209ENST00000434274 RGPD2P0DJD1 1756 aa20.42■□□□□ 0.86
LIMS1-209ENST00000434274 R3HDM1Q15032 1099 aaKnown RBP20.42■□□□□ 0.86
LIMS1-209ENST00000434274 MAP2P11137 1827 aaKnown RBP20.41■□□□□ 0.86
LIMS1-209ENST00000434274 PSDA5PKW4 1024 aaPredicted RBP20.41■□□□□ 0.86
LIMS1-209ENST00000434274 BTAF1O14981 1849 aa20.4■□□□□ 0.86
LIMS1-209ENST00000434274 HMGB2P26583 209 aaKnown RBP20.4■□□□□ 0.86
LIMS1-209ENST00000434274 KAT6BQ8WYB5 2073 aa20.4■□□□□ 0.86
LIMS1-209ENST00000434274 MEGF6O75095 1541 aa20.39■□□□□ 0.85
LIMS1-209ENST00000434274 WASHC2AQ641Q2 1341 aa20.39■□□□□ 0.85
LIMS1-209ENST00000434274 ZCRB1Q8TBF4 217 aaKnown RBP20.39■□□□□ 0.85
LIMS1-209ENST00000434274 SHANK3Q9BYB0 1731 aa20.39■□□□□ 0.85
LIMS1-209ENST00000434274 NCAPD2Q15021 1401 aa20.38■□□□□ 0.85
LIMS1-209ENST00000434274 TATP17735 454 aaPredicted RBP20.38■□□□□ 0.85
LIMS1-209ENST00000434274 PCDH11XQ9BZA7 1347 aa20.37■□□□□ 0.85
LIMS1-209ENST00000434274 PCDH11YQ9BZA8 1340 aa20.37■□□□□ 0.85
LIMS1-209ENST00000434274 HSP90AB2PQ58FF8 381 aa20.37■□□□□ 0.85
LIMS1-209ENST00000434274 PANK3Q9H999 370 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms