RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 OTUD7AQ8TE49 926 aaPredicted RBP14.13□□□□□ -0.15
HMGCS1-202ENST00000433297 CYP2E1P05181 493 aaPredicted RBP14.13□□□□□ -0.15
HMGCS1-202ENST00000433297 ERCC6Q03468 1493 aa14.13□□□□□ -0.15
HMGCS1-202ENST00000433297 INTS3Q68E01 1043 aaKnown RBP14.13□□□□□ -0.15
HMGCS1-202ENST00000433297 SHPRHQ149N8 1683 aa14.12□□□□□ -0.15
HMGCS1-202ENST00000433297 ABCC11Q96J66 1382 aa14.12□□□□□ -0.15
HMGCS1-202ENST00000433297 SMARCA5O60264 1052 aaPredicted RBP14.12□□□□□ -0.15
HMGCS1-202ENST00000433297 SRPK2P78362 688 aaKnown RBP14.12□□□□□ -0.15
HMGCS1-202ENST00000433297 CASC1Q6TDU7 716 aa14.12□□□□□ -0.15
HMGCS1-202ENST00000433297 TSPY26PQ9H489 355 aa14.12□□□□□ -0.15
HMGCS1-202ENST00000433297 ALDH1L2Q3SY69 923 aa14.12□□□□□ -0.15
HMGCS1-202ENST00000433297 SPDYE4A6NLX3 237 aa14.11□□□□□ -0.15
HMGCS1-202ENST00000433297 FBLN1P23142 703 aa14.11□□□□□ -0.15
HMGCS1-202ENST00000433297 NEK4P51957 841 aa14.11□□□□□ -0.15
HMGCS1-202ENST00000433297 CHMP4BQ9H444 224 aaKnown RBP14.11□□□□□ -0.15
HMGCS1-202ENST00000433297 TTC12Q9H892 705 aaPredicted RBP14.11□□□□□ -0.15
HMGCS1-202ENST00000433297 NOS1P29475 1434 aa14.11□□□□□ -0.15
HMGCS1-202ENST00000433297 PREX2Q70Z35 1606 aa14.11□□□□□ -0.15
HMGCS1-202ENST00000433297 IGSF3O75054 1194 aa14.11□□□□□ -0.15
HMGCS1-202ENST00000433297 TRAPPC8Q9Y2L5 1435 aa14.11□□□□□ -0.15
HMGCS1-202ENST00000433297 DIAPH1O60610 1272 aaKnown RBP14.11□□□□□ -0.15
HMGCS1-202ENST00000433297 HMOX1P09601 288 aa14.11□□□□□ -0.15
HMGCS1-202ENST00000433297 PPP4R3BQ5MIZ7 849 aa14.11□□□□□ -0.15
HMGCS1-202ENST00000433297 STK26Q9P289 416 aa14.11□□□□□ -0.15
HMGCS1-202ENST00000433297 TTC22Q5TAA0 569 aa14.1□□□□□ -0.15
HMGCS1-202ENST00000433297 USP25Q9UHP3 1055 aa14.1□□□□□ -0.15
HMGCS1-202ENST00000433297 UGGT1Q9NYU2 1555 aa14.1□□□□□ -0.15
HMGCS1-202ENST00000433297 SDSP20132 328 aa14.09□□□□□ -0.15
HMGCS1-202ENST00000433297 PRKAR2BP31323 418 aa14.09□□□□□ -0.15
HMGCS1-202ENST00000433297 MYRIPQ8NFW9 859 aa14.09□□□□□ -0.15
HMGCS1-202ENST00000433297 CLTCL1P53675 1640 aa14.09□□□□□ -0.15
HMGCS1-202ENST00000433297 VAMP4O75379 141 aa14.09□□□□□ -0.15
HMGCS1-202ENST00000433297 MBD3O95983 291 aa14.09□□□□□ -0.15
HMGCS1-202ENST00000433297 DMTNQ08495 405 aa14.09□□□□□ -0.15
HMGCS1-202ENST00000433297 NOLC1Q14978 699 aaKnown RBP eCLIP14.09□□□□□ -0.152e-10■□□□□ 10.7
HMGCS1-202ENST00000433297 MRPL50Q8N5N7 158 aaKnown RBP14.09□□□□□ -0.15
HMGCS1-202ENST00000433297 EVC2Q86UK5 1308 aa14.08□□□□□ -0.15
HMGCS1-202ENST00000433297 ZSCAN20P17040 1043 aaPredicted RBP14.08□□□□□ -0.16
HMGCS1-202ENST00000433297 IL16Q14005 1332 aa14.08□□□□□ -0.16
HMGCS1-202ENST00000433297 TRPM2O94759 1503 aa14.07□□□□□ -0.16
HMGCS1-202ENST00000433297 SPHKAPQ2M3C7 1700 aa14.07□□□□□ -0.16
HMGCS1-202ENST00000433297 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.07□□□□□ -0.162e-6■■□□□ 11.9
HMGCS1-202ENST00000433297 ZNF710Q8N1W2 664 aa14.06□□□□□ -0.16
HMGCS1-202ENST00000433297 SYAP1Q96A49 352 aaPredicted RBP14.06□□□□□ -0.16
HMGCS1-202ENST00000433297 TMX3Q96JJ7 454 aa14.06□□□□□ -0.16
HMGCS1-202ENST00000433297 GADD45BO75293 160 aaPredicted RBP14.06□□□□□ -0.16
HMGCS1-202ENST00000433297 KIF3AQ9Y496 699 aa14.06□□□□□ -0.16
HMGCS1-202ENST00000433297 REC8O95072 547 aa14.06□□□□□ -0.16
HMGCS1-202ENST00000433297 ATP2B3Q16720 1220 aa14.06□□□□□ -0.16
HMGCS1-202ENST00000433297 NCBP3Q53F19 620 aaKnown RBP14.06□□□□□ -0.16
HMGCS1-202ENST00000433297 TWISTNBQ3B726 338 aaPredicted RBP14.05□□□□□ -0.16
HMGCS1-202ENST00000433297 ADCY5O95622 1261 aa14.05□□□□□ -0.16
HMGCS1-202ENST00000433297 HMGN5P82970 282 aaKnown RBP14.05□□□□□ -0.16
HMGCS1-202ENST00000433297 PHACTR3Q96KR7 559 aa14.05□□□□□ -0.16
HMGCS1-202ENST00000433297 CFAP44Q96MT7 982 aa14.05□□□□□ -0.16
HMGCS1-202ENST00000433297 BCL11BQ9C0K0 894 aaPredicted RBP14.05□□□□□ -0.16
HMGCS1-202ENST00000433297 CFAP74Q9C0B2 1584 aa14.04□□□□□ -0.16
HMGCS1-202ENST00000433297 TSHZ3Q63HK5 1081 aa14.04□□□□□ -0.16
HMGCS1-202ENST00000433297 DCTPP1Q9H773 170 aa14.04□□□□□ -0.16
HMGCS1-202ENST00000433297 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.03□□□□□ -0.16
HMGCS1-202ENST00000433297 ERC2O15083 957 aa14.03□□□□□ -0.16
HMGCS1-202ENST00000433297 HCLS1P14317 486 aaPredicted RBP14.03□□□□□ -0.16
HMGCS1-202ENST00000433297 PIBF1Q8WXW3 757 aa14.03□□□□□ -0.16
HMGCS1-202ENST00000433297 PRIMPOLQ96LW4 560 aa14.03□□□□□ -0.16
HMGCS1-202ENST00000433297 C14orf93Q9H972 538 aaKnown RBP14.03□□□□□ -0.16
HMGCS1-202ENST00000433297 FYB1O15117 783 aa14.03□□□□□ -0.16
HMGCS1-202ENST00000433297 C8orf58Q8NAV2 365 aa14.03□□□□□ -0.16
HMGCS1-202ENST00000433297 MBIPQ9NS73 344 aa14.03□□□□□ -0.16
HMGCS1-202ENST00000433297 SBNO2Q9Y2G9 1366 aa14.02□□□□□ -0.16
HMGCS1-202ENST00000433297 PDCL2Q8N4E4 241 aa14.02□□□□□ -0.16
HMGCS1-202ENST00000433297 ANKRD36BQ8N2N9 1353 aa14.02□□□□□ -0.16
HMGCS1-202ENST00000433297 USP48Q86UV5 1035 aa14.02□□□□□ -0.17
HMGCS1-202ENST00000433297 SPC24Q8NBT2 197 aa14.02□□□□□ -0.17
HMGCS1-202ENST00000433297 UPF3BQ9BZI7 483 aaKnown RBP14.02□□□□□ -0.17
HMGCS1-202ENST00000433297 BCL2L12Q9HB09 334 aa14.02□□□□□ -0.17
HMGCS1-202ENST00000433297 ABCA6Q8N139 1617 aa14.02□□□□□ -0.17
HMGCS1-202ENST00000433297 UTP14CQ5TAP6 766 aaKnown RBP14.02□□□□□ -0.17
HMGCS1-202ENST00000433297 ARHGAP45Q92619 1136 aa14.02□□□□□ -0.17
HMGCS1-202ENST00000433297 API5Q9BZZ5 524 aaKnown RBP14.02□□□□□ -0.17
HMGCS1-202ENST00000433297 PHF14O94880 888 aa14.01□□□□□ -0.17
HMGCS1-202ENST00000433297 DCTN1Q14203 1278 aa14.01□□□□□ -0.17
HMGCS1-202ENST00000433297 MINK1Q8N4C8 1332 aaPredicted RBP14.01□□□□□ -0.17
HMGCS1-202ENST00000433297 U2AF2P26368 475 aaKnown RBP eCLIP14.01□□□□□ -0.177e-13■■□□□ 12.6
HMGCS1-202ENST00000433297 GGT6Q6P531 493 aa14.01□□□□□ -0.17
HMGCS1-202ENST00000433297 CHAF1AQ13111 956 aaPredicted RBP14□□□□□ -0.17
HMGCS1-202ENST00000433297 ANO2Q9NQ90 1003 aa14□□□□□ -0.17
HMGCS1-202ENST00000433297 FAM83GA6ND36 823 aa14□□□□□ -0.17
HMGCS1-202ENST00000433297 BRD1O95696 1058 aa14□□□□□ -0.17
HMGCS1-202ENST00000433297 GNAI1P63096 354 aa14□□□□□ -0.17
HMGCS1-202ENST00000433297 DTNBO60941 627 aa14□□□□□ -0.17
HMGCS1-202ENST00000433297 FCHSD2O94868 740 aa14□□□□□ -0.17
HMGCS1-202ENST00000433297 RILPL2Q969X0 211 aa14□□□□□ -0.17
HMGCS1-202ENST00000433297 ZNF428Q96B54 188 aa14□□□□□ -0.17
HMGCS1-202ENST00000433297 SHROOM2Q13796 1616 aa13.99□□□□□ -0.17
HMGCS1-202ENST00000433297 MAP3K4Q9Y6R4 1608 aa13.99□□□□□ -0.17
HMGCS1-202ENST00000433297 A0A1W2PP64 1363 aa13.99□□□□□ -0.17
HMGCS1-202ENST00000433297 TRIM6-TRIM34B2RNG4 842 aa13.99□□□□□ -0.17
HMGCS1-202ENST00000433297 ABCC4O15439 1325 aa13.99□□□□□ -0.17
HMGCS1-202ENST00000433297 PLCH2O75038 1416 aa13.99□□□□□ -0.17
HMGCS1-202ENST00000433297 ADGRL1O94910 1474 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms