RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 PIK3C2BO00750 1634 aa12.18□□□□□ -0.46
USP54-205ENST00000424265 ACEP12821 1306 aa12.18□□□□□ -0.46
USP54-205ENST00000424265 DMTNQ08495 405 aa12.18□□□□□ -0.46
USP54-205ENST00000424265 GOLGA2Q08379 1002 aa12.18□□□□□ -0.46
USP54-205ENST00000424265 ZNF830Q96NB3 372 aaPredicted RBP12.18□□□□□ -0.46
USP54-205ENST00000424265 C1orf141Q5JVX7 400 aa12.18□□□□□ -0.46
USP54-205ENST00000424265 TRPM1Q7Z4N2 1603 aa12.18□□□□□ -0.46
USP54-205ENST00000424265 CCDC9Q9Y3X0 531 aaKnown RBP12.18□□□□□ -0.46
USP54-205ENST00000424265 KDM5AP29375 1690 aaKnown RBP12.18□□□□□ -0.46
USP54-205ENST00000424265 ALKQ9UM73 1620 aa12.18□□□□□ -0.46
USP54-205ENST00000424265 MRE11P49959 708 aa12.17□□□□□ -0.46
USP54-205ENST00000424265 NEXMIFQ5QGS0 1516 aa12.17□□□□□ -0.46
USP54-205ENST00000424265 DLC1Q96QB1 1528 aa12.17□□□□□ -0.46
USP54-205ENST00000424265 A0A0G2JS52 829 aa12.17□□□□□ -0.46
USP54-205ENST00000424265 KRT28Q7Z3Y7 464 aa12.17□□□□□ -0.46
USP54-205ENST00000424265 DNAJC2Q99543 621 aaKnown RBP12.17□□□□□ -0.46
USP54-205ENST00000424265 HDAC5Q9UQL6 1122 aa12.17□□□□□ -0.46
USP54-205ENST00000424265 RAPGEF4Q8WZA2 1011 aa12.16□□□□□ -0.46
USP54-205ENST00000424265 EDC4Q6P2E9 1401 aaKnown RBP12.16□□□□□ -0.46
USP54-205ENST00000424265 METP08581 1390 aa12.16□□□□□ -0.46
USP54-205ENST00000424265 AXDND1Q5T1B0 1012 aaPredicted RBP12.16□□□□□ -0.46
USP54-205ENST00000424265 TTC21BQ7Z4L5 1316 aa12.16□□□□□ -0.46
USP54-205ENST00000424265 MEX3CQ5U5Q3 659 aaKnown RBP12.16□□□□□ -0.46
USP54-205ENST00000424265 ZBED9Q6R2W3 1325 aa12.16□□□□□ -0.46
USP54-205ENST00000424265 GAS2L2Q8NHY3 880 aa12.16□□□□□ -0.46
USP54-205ENST00000424265 LTV1Q96GA3 475 aaPredicted RBP12.16□□□□□ -0.46
USP54-205ENST00000424265 NRXN1Q9ULB1 1477 aa12.16□□□□□ -0.46
USP54-205ENST00000424265 PLEKHG3A1L390 1219 aa12.15□□□□□ -0.46
USP54-205ENST00000424265 ANKARQ7Z5J8 1434 aa12.15□□□□□ -0.46
USP54-205ENST00000424265 IPO8O15397 1037 aaKnown RBP12.14□□□□□ -0.47
USP54-205ENST00000424265 UQCRHLA0A096LP55 91 aa12.14□□□□□ -0.47
USP54-205ENST00000424265 UQCRHP07919 91 aa12.14□□□□□ -0.47
USP54-205ENST00000424265 BACH2Q9BYV9 841 aa12.14□□□□□ -0.47
USP54-205ENST00000424265 PTCH1Q13635 1447 aa12.14□□□□□ -0.47
USP54-205ENST00000424265 CNKSR2Q8WXI2 1034 aa12.14□□□□□ -0.47
USP54-205ENST00000424265 ATP7BP35670 1465 aa12.13□□□□□ -0.47
USP54-205ENST00000424265 LMTK3Q96Q04 1460 aa12.13□□□□□ -0.47
USP54-205ENST00000424265 HMGB2P26583 209 aaKnown RBP12.13□□□□□ -0.47
USP54-205ENST00000424265 PLEKHO1Q53GL0 409 aaPredicted RBP12.13□□□□□ -0.47
USP54-205ENST00000424265 CCDC66A2RUB6 948 aa12.12□□□□□ -0.47
USP54-205ENST00000424265 FOXO3O43524 673 aa12.12□□□□□ -0.47
USP54-205ENST00000424265 PRDM11Q9NQV5 511 aa12.12□□□□□ -0.47
USP54-205ENST00000424265 TMEM131LA2VDJ0 1609 aa12.12□□□□□ -0.47
USP54-205ENST00000424265 FCHSD2O94868 740 aa12.12□□□□□ -0.47
USP54-205ENST00000424265 SLIT1O75093 1534 aa12.12□□□□□ -0.47
USP54-205ENST00000424265 ARHGEF10O15013 1369 aa12.11□□□□□ -0.47
USP54-205ENST00000424265 NLRP2Q9NX02 1062 aa12.11□□□□□ -0.47
USP54-205ENST00000424265 NUTM2GQ5VZR2 741 aa12.11□□□□□ -0.47
USP54-205ENST00000424265 SLKQ9H2G2 1235 aaPredicted RBP12.11□□□□□ -0.47
USP54-205ENST00000424265 TMEM51Q9NW97 253 aa12.11□□□□□ -0.47
USP54-205ENST00000424265 A0A1W2PP64 1363 aa12.11□□□□□ -0.47
USP54-205ENST00000424265 NME9Q86XW9 330 aa12.1□□□□□ -0.47
USP54-205ENST00000424265 CCDC94Q9BW85 323 aaPredicted RBP12.1□□□□□ -0.47
USP54-205ENST00000424265 NCOA3Q9Y6Q9 1424 aa12.1□□□□□ -0.47
USP54-205ENST00000424265 TMEM94Q12767 1356 aa12.1□□□□□ -0.47
USP54-205ENST00000424265 TATP17735 454 aaPredicted RBP12.1□□□□□ -0.47
USP54-205ENST00000424265 TEFQ10587 303 aa12.1□□□□□ -0.47
USP54-205ENST00000424265 ZNF622Q969S3 477 aaKnown RBP eCLIP12.1□□□□□ -0.47
USP54-205ENST00000424265 UPF2Q9HAU5 1272 aaKnown RBP12.1□□□□□ -0.47
USP54-205ENST00000424265 PARD3Q8TEW0 1356 aa12.09□□□□□ -0.47
USP54-205ENST00000424265 ROBO2Q9HCK4 1378 aa12.09□□□□□ -0.47
USP54-205ENST00000424265 GNAI1P63096 354 aa12.09□□□□□ -0.47
USP54-205ENST00000424265 CCDC146Q8IYE0 955 aa12.09□□□□□ -0.47
USP54-205ENST00000424265 HSP90AB1P08238 724 aaKnown RBP12.09□□□□□ -0.47
USP54-205ENST00000424265 STK31Q9BXU1 1019 aa12.09□□□□□ -0.47
USP54-205ENST00000424265 ADGRL3Q9HAR2 1447 aa12.09□□□□□ -0.47
USP54-205ENST00000424265 LRRC59Q96AG4 307 aaKnown RBP12.09□□□□□ -0.47
USP54-205ENST00000424265 ARHGAP23Q9P227 1491 aa12.09□□□□□ -0.47
USP54-205ENST00000424265 CSPP1Q1MSJ5 1256 aa12.09□□□□□ -0.47
USP54-205ENST00000424265 XRCC6P12956 609 aaKnown RBP eCLIP12.08□□□□□ -0.48
USP54-205ENST00000424265 UBAP1LF5GYI3 381 aa12.08□□□□□ -0.48
USP54-205ENST00000424265 CBX1P83916 185 aa12.08□□□□□ -0.48
USP54-205ENST00000424265 SPG7Q9UQ90 795 aa12.08□□□□□ -0.48
USP54-205ENST00000424265 TECPR2O15040 1411 aa12.08□□□□□ -0.48
USP54-205ENST00000424265 FYB1O15117 783 aa12.08□□□□□ -0.48
USP54-205ENST00000424265 PNISRQ8TF01 805 aaKnown RBP12.08□□□□□ -0.48
USP54-205ENST00000424265 RIPK4P57078 832 aa12.08□□□□□ -0.48
USP54-205ENST00000424265 PIP4K2BP78356 416 aa12.08□□□□□ -0.48
USP54-205ENST00000424265 PPLO60437 1756 aa12.08□□□□□ -0.48
USP54-205ENST00000424265 APAF1O14727 1248 aa12.07□□□□□ -0.48
USP54-205ENST00000424265 KCNJ4P48050 445 aa12.07□□□□□ -0.48
USP54-205ENST00000424265 POLR3AO14802 1390 aaPredicted RBP12.07□□□□□ -0.48
USP54-205ENST00000424265 FBXO3Q9UK99 471 aa12.07□□□□□ -0.48
USP54-205ENST00000424265 NKTRP30414 1462 aaKnown RBP12.07□□□□□ -0.48
USP54-205ENST00000424265 PLEKHH1Q9ULM0 1364 aa12.07□□□□□ -0.48
USP54-205ENST00000424265 CERS3Q8IU89 383 aa12.06□□□□□ -0.48
USP54-205ENST00000424265 ADAMTS13Q76LX8 1427 aa12.06□□□□□ -0.48
USP54-205ENST00000424265 DYNC1I1O14576 645 aa12.06□□□□□ -0.48
USP54-205ENST00000424265 AMOTQ4VCS5 1084 aa12.06□□□□□ -0.48
USP54-205ENST00000424265 TSPYL1Q9H0U9 437 aa12.06□□□□□ -0.48
USP54-205ENST00000424265 RCAN3Q9UKA8 241 aa12.06□□□□□ -0.48
USP54-205ENST00000424265 ADAMTS8Q9UP79 889 aa12.06□□□□□ -0.48
USP54-205ENST00000424265 SLAIN2Q9P270 581 aa12.05□□□□□ -0.48
USP54-205ENST00000424265 MYO3AQ8NEV4 1616 aa12.05□□□□□ -0.48
USP54-205ENST00000424265 FLT4P35916 1363 aa12.05□□□□□ -0.48
USP54-205ENST00000424265 GRPEL1Q9HAV7 217 aa12.05□□□□□ -0.48
USP54-205ENST00000424265 PRKAR2BP31323 418 aa12.05□□□□□ -0.48
USP54-205ENST00000424265 C3P01024 1663 aa12.05□□□□□ -0.48
USP54-205ENST00000424265 CT47B1P0C2W7 299 aaPredicted RBP12.04□□□□□ -0.48
USP54-205ENST00000424265 TOM1L2Q6ZVM7 507 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms