RNA–Protein interactions for RNA: ENST00000420503.1

LINC00339-203, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 771 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-203ENST00000420503 DDB1Q16531 1140 aa18.6■□□□□ 0.57
LINC00339-203ENST00000420503 NBPF14Q5TI25 921 aa18.6■□□□□ 0.57
LINC00339-203ENST00000420503 PROM2Q8N271 834 aa18.6■□□□□ 0.57
LINC00339-203ENST00000420503 CASZ1Q86V15 1759 aa18.6■□□□□ 0.57
LINC00339-203ENST00000420503 TTC21BQ7Z4L5 1316 aa18.59■□□□□ 0.57
LINC00339-203ENST00000420503 BRD4O60885 1362 aaPredicted RBP18.58■□□□□ 0.57
LINC00339-203ENST00000420503 WDR17Q8IZU2 1322 aa18.58■□□□□ 0.57
LINC00339-203ENST00000420503 ARHGEF25Q86VW2 580 aa18.58■□□□□ 0.56
LINC00339-203ENST00000420503 NFAT5O94916 1531 aa18.58■□□□□ 0.56
LINC00339-203ENST00000420503 RGPD3A6NKT7 1758 aaPredicted RBP18.58■□□□□ 0.56
LINC00339-203ENST00000420503 RGPD4Q7Z3J3 1758 aa18.58■□□□□ 0.56
LINC00339-203ENST00000420503 KCNQ2O43526 872 aa18.57■□□□□ 0.56
LINC00339-203ENST00000420503 EVC2Q86UK5 1308 aa18.56■□□□□ 0.56
LINC00339-203ENST00000420503 SPON1Q9HCB6 807 aa18.56■□□□□ 0.56
LINC00339-203ENST00000420503 NEUROD1Q13562 356 aa18.55■□□□□ 0.56
LINC00339-203ENST00000420503 PPP1R1BQ9UD71 204 aaPredicted RBP18.55■□□□□ 0.56
LINC00339-203ENST00000420503 YY1P25490 414 aa18.54■□□□□ 0.56
LINC00339-203ENST00000420503 BCL11BQ9C0K0 894 aaPredicted RBP18.54■□□□□ 0.56
LINC00339-203ENST00000420503 ROCK2O75116 1388 aaKnown RBP18.54■□□□□ 0.56
LINC00339-203ENST00000420503 MYOM1P52179 1685 aa18.54■□□□□ 0.56
LINC00339-203ENST00000420503 PLSCR1O15162 318 aa18.53■□□□□ 0.56
LINC00339-203ENST00000420503 ZBTB7AO95365 584 aa18.53■□□□□ 0.56
LINC00339-203ENST00000420503 CSB-PGBD3P0DP91 1061 aa18.53■□□□□ 0.56
LINC00339-203ENST00000420503 MON2Q7Z3U7 1717 aa18.52■□□□□ 0.56
LINC00339-203ENST00000420503 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.51■□□□□ 0.55
LINC00339-203ENST00000420503 CARD10Q9BWT7 1032 aa18.51■□□□□ 0.55
LINC00339-203ENST00000420503 KTN1Q86UP2 1357 aaKnown RBP18.51■□□□□ 0.55
LINC00339-203ENST00000420503 CD163L1Q9NR16 1453 aa18.51■□□□□ 0.55
LINC00339-203ENST00000420503 NME9Q86XW9 330 aa18.5■□□□□ 0.55
LINC00339-203ENST00000420503 ATF5Q9Y2D1 282 aaPredicted RBP18.5■□□□□ 0.55
LINC00339-203ENST00000420503 TXNRD1Q16881 649 aa18.49■□□□□ 0.55
LINC00339-203ENST00000420503 ACSBG1Q96GR2 724 aa18.49■□□□□ 0.55
LINC00339-203ENST00000420503 NINLQ9Y2I6 1382 aa18.49■□□□□ 0.55
LINC00339-203ENST00000420503 BCL9O00512 1426 aa18.49■□□□□ 0.55
LINC00339-203ENST00000420503 TNS2Q63HR2 1409 aa18.49■□□□□ 0.55
LINC00339-203ENST00000420503 PTGER2P43116 358 aa18.48■□□□□ 0.55
LINC00339-203ENST00000420503 KCNH5Q8NCM2 988 aa18.48■□□□□ 0.55
LINC00339-203ENST00000420503 TTC21AQ8NDW8 1320 aa18.48■□□□□ 0.55
LINC00339-203ENST00000420503 LTN1O94822 1766 aa18.47■□□□□ 0.55
LINC00339-203ENST00000420503 SBNO2Q9Y2G9 1366 aa18.46■□□□□ 0.55
LINC00339-203ENST00000420503 C11orf95C9JLR9 678 aaPredicted RBP18.46■□□□□ 0.55
LINC00339-203ENST00000420503 ZNF692Q9BU19 519 aaPredicted RBP18.46■□□□□ 0.55
LINC00339-203ENST00000420503 NHSQ6T4R5 1651 aa18.46■□□□□ 0.55
LINC00339-203ENST00000420503 CDCA7Q9BWT1 371 aaPredicted RBP18.45■□□□□ 0.54
LINC00339-203ENST00000420503 KAT6BQ8WYB5 2073 aa18.45■□□□□ 0.54
LINC00339-203ENST00000420503 USP54Q70EL1 1684 aa18.44■□□□□ 0.54
LINC00339-203ENST00000420503 EXOC5O00471 708 aa18.44■□□□□ 0.54
LINC00339-203ENST00000420503 ERBB3P21860 1342 aa18.44■□□□□ 0.54
LINC00339-203ENST00000420503 ABCC6O95255 1503 aa18.44■□□□□ 0.54
LINC00339-203ENST00000420503 USP31Q70CQ4 1352 aa18.43■□□□□ 0.54
LINC00339-203ENST00000420503 CCDC7Q96M83 1385 aa18.43■□□□□ 0.54
LINC00339-203ENST00000420503 PAPPAQ13219 1627 aa18.43■□□□□ 0.54
LINC00339-203ENST00000420503 SLC12A5Q9H2X9 1139 aa18.43■□□□□ 0.54
LINC00339-203ENST00000420503 NLRP2Q9NX02 1062 aa18.43■□□□□ 0.54
LINC00339-203ENST00000420503 BTAF1O14981 1849 aa18.43■□□□□ 0.54
LINC00339-203ENST00000420503 SLC15A2Q16348 729 aa18.42■□□□□ 0.54
LINC00339-203ENST00000420503 STK32BQ9NY57 414 aa18.42■□□□□ 0.54
LINC00339-203ENST00000420503 UTRNP46939 3433 aa18.42■□□□□ 0.54
LINC00339-203ENST00000420503 ZNF827Q17R98 1081 aa18.41■□□□□ 0.54
LINC00339-203ENST00000420503 TMC1Q8TDI8 760 aa18.41■□□□□ 0.54
LINC00339-203ENST00000420503 FHDC1Q9C0D6 1143 aaPredicted RBP18.41■□□□□ 0.54
LINC00339-203ENST00000420503 SGIP1Q9BQI5 828 aa18.4■□□□□ 0.54
LINC00339-203ENST00000420503 ANKRD24Q8TF21 1146 aa18.39■□□□□ 0.53
LINC00339-203ENST00000420503 A0A1W2PP64 1363 aa18.39■□□□□ 0.53
LINC00339-203ENST00000420503 FBLN1P23142 703 aa18.38■□□□□ 0.53
LINC00339-203ENST00000420503 CARD11Q9BXL7 1154 aa18.38■□□□□ 0.53
LINC00339-203ENST00000420503 LRRC4BQ9NT99 713 aa18.38■□□□□ 0.53
LINC00339-203ENST00000420503 IL2RBP14784 551 aa18.37■□□□□ 0.53
LINC00339-203ENST00000420503 SYT17Q9BSW7 474 aa18.37■□□□□ 0.53
LINC00339-203ENST00000420503 KCNQ4P56696 695 aa18.36■□□□□ 0.53
LINC00339-203ENST00000420503 LTV1Q96GA3 475 aaPredicted RBP18.36■□□□□ 0.53
LINC00339-203ENST00000420503 RGPD2P0DJD1 1756 aa18.35■□□□□ 0.53
LINC00339-203ENST00000420503 MTFR1LQ9H019 292 aa18.35■□□□□ 0.53
LINC00339-203ENST00000420503 EDC4Q6P2E9 1401 aaKnown RBP18.34■□□□□ 0.53
LINC00339-203ENST00000420503 TUBGCP6Q96RT7 1819 aa18.33■□□□□ 0.53
LINC00339-203ENST00000420503 DCAF8L1A6NGE4 600 aa18.32■□□□□ 0.52
LINC00339-203ENST00000420503 ZNF784Q8NCA9 323 aaPredicted RBP18.32■□□□□ 0.52
LINC00339-203ENST00000420503 DDX54Q8TDD1 881 aaKnown RBP18.32■□□□□ 0.52
LINC00339-203ENST00000420503 SHANK3Q9BYB0 1731 aa18.32■□□□□ 0.52
LINC00339-203ENST00000420503 FAM208AQ9UK61 1670 aaKnown RBP18.31■□□□□ 0.52
LINC00339-203ENST00000420503 HDGFL2Q7Z4V5 671 aaPredicted RBP18.31■□□□□ 0.52
LINC00339-203ENST00000420503 DOT1LQ8TEK3 1739 aa18.31■□□□□ 0.52
LINC00339-203ENST00000420503 MAP3K19Q56UN5 1328 aa18.29■□□□□ 0.52
LINC00339-203ENST00000420503 IP6K1Q92551 441 aa18.29■□□□□ 0.52
LINC00339-203ENST00000420503 AKT1S1Q96B36 256 aa18.29■□□□□ 0.52
LINC00339-203ENST00000420503 ARXQ96QS3 562 aa18.29■□□□□ 0.52
LINC00339-203ENST00000420503 MEGF6O75095 1541 aa18.28■□□□□ 0.52
LINC00339-203ENST00000420503 TESK2Q96S53 571 aa18.28■□□□□ 0.52
LINC00339-203ENST00000420503 NSD2O96028 1365 aa18.28■□□□□ 0.52
LINC00339-203ENST00000420503 PNPLA7Q6ZV29 1317 aa18.27■□□□□ 0.52
LINC00339-203ENST00000420503 CHD4Q14839 1912 aa18.27■□□□□ 0.51
LINC00339-203ENST00000420503 KLHL34Q8N239 644 aa18.26■□□□□ 0.51
LINC00339-203ENST00000420503 SYTL4Q96C24 671 aaPredicted RBP18.26■□□□□ 0.51
LINC00339-203ENST00000420503 TERF2IPQ9NYB0 399 aa18.26■□□□□ 0.51
LINC00339-203ENST00000420503 ST20-MTHFSA0A0A6YYL1 179 aa18.25■□□□□ 0.51
LINC00339-203ENST00000420503 HOXC9P31274 260 aa18.25■□□□□ 0.51
LINC00339-203ENST00000420503 PRIM1P49642 420 aaKnown RBP18.25■□□□□ 0.51
LINC00339-203ENST00000420503 USHBP1Q8N6Y0 703 aa18.25■□□□□ 0.51
LINC00339-203ENST00000420503 TONSLQ96HA7 1378 aa18.24■□□□□ 0.51
LINC00339-203ENST00000420503 LY75O60449 1722 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms