RNA–Protein interactions for RNA: ENST00000416204.1

LINC01238-201, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2 BASIC

Gene LINC01238, Length 590 nt, Biotype lincRNA, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-201ENST00000416204 NBPF1Q3BBV0 1214 aa13.68□□□□□ -0.22
LINC01238-201ENST00000416204 AXIN2Q9Y2T1 843 aa13.68□□□□□ -0.22
LINC01238-201ENST00000416204 STK32BQ9NY57 414 aa13.67□□□□□ -0.22
LINC01238-201ENST00000416204 TXNRD1Q16881 649 aa13.66□□□□□ -0.22
LINC01238-201ENST00000416204 SYT17Q9BSW7 474 aa13.66□□□□□ -0.22
LINC01238-201ENST00000416204 CABP1Q9NZU7 370 aa13.66□□□□□ -0.22
LINC01238-201ENST00000416204 SBF2Q86WG5 1849 aa13.66□□□□□ -0.22
LINC01238-201ENST00000416204 GOLGB1Q14789 3259 aaKnown RBP13.66□□□□□ -0.22
LINC01238-201ENST00000416204 CSB-PGBD3P0DP91 1061 aa13.65□□□□□ -0.22
LINC01238-201ENST00000416204 AATKQ6ZMQ8 1374 aa13.65□□□□□ -0.22
LINC01238-201ENST00000416204 C11orf95C9JLR9 678 aaPredicted RBP13.64□□□□□ -0.23
LINC01238-201ENST00000416204 SLC15A2Q16348 729 aa13.64□□□□□ -0.23
LINC01238-201ENST00000416204 ACSBG1Q96GR2 724 aa13.64□□□□□ -0.23
LINC01238-201ENST00000416204 RGPD3A6NKT7 1758 aaPredicted RBP13.63□□□□□ -0.23
LINC01238-201ENST00000416204 RGPD4Q7Z3J3 1758 aa13.63□□□□□ -0.23
LINC01238-201ENST00000416204 WDR17Q8IZU2 1322 aa13.63□□□□□ -0.23
LINC01238-201ENST00000416204 C1QTNF8P60827 252 aa13.62□□□□□ -0.23
LINC01238-201ENST00000416204 KLHL34Q8N239 644 aa13.62□□□□□ -0.23
LINC01238-201ENST00000416204 USP6P35125 1406 aa13.62□□□□□ -0.23
LINC01238-201ENST00000416204 CENPJQ9HC77 1338 aaPredicted RBP13.62□□□□□ -0.23
LINC01238-201ENST00000416204 CEP350Q5VT06 3117 aa13.62□□□□□ -0.23
LINC01238-201ENST00000416204 SLIT3O75094 1523 aa13.61□□□□□ -0.23
LINC01238-201ENST00000416204 PELP1Q8IZL8 1130 aaKnown RBP13.61□□□□□ -0.23
LINC01238-201ENST00000416204 MTFR1LQ9H019 292 aa13.61□□□□□ -0.23
LINC01238-201ENST00000416204 EXOC5O00471 708 aa13.6□□□□□ -0.23
LINC01238-201ENST00000416204 CPSF1Q10570 1443 aaKnown RBP13.6□□□□□ -0.23
LINC01238-201ENST00000416204 ARXQ96QS3 562 aa13.6□□□□□ -0.23
LINC01238-201ENST00000416204 SGIP1Q9BQI5 828 aa13.6□□□□□ -0.23
LINC01238-201ENST00000416204 COL18A1P39060 1754 aa13.6□□□□□ -0.23
LINC01238-201ENST00000416204 PIK3C2AO00443 1686 aa13.59□□□□□ -0.23
LINC01238-201ENST00000416204 GPR162Q16538 588 aa13.59□□□□□ -0.23
LINC01238-201ENST00000416204 STAC3Q96MF2 364 aa13.59□□□□□ -0.23
LINC01238-201ENST00000416204 WNK3Q9BYP7 1800 aa13.59□□□□□ -0.23
LINC01238-201ENST00000416204 AKAP12Q02952 1782 aa13.58□□□□□ -0.23
LINC01238-201ENST00000416204 ZNF827Q17R98 1081 aa13.58□□□□□ -0.24
LINC01238-201ENST00000416204 ARHGEF25Q86VW2 580 aa13.58□□□□□ -0.24
LINC01238-201ENST00000416204 CARD10Q9BWT7 1032 aa13.58□□□□□ -0.24
LINC01238-201ENST00000416204 CDCA7Q9BWT1 371 aaPredicted RBP13.57□□□□□ -0.24
LINC01238-201ENST00000416204 RGPD5Q99666 1765 aa13.57□□□□□ -0.24
LINC01238-201ENST00000416204 TTC21BQ7Z4L5 1316 aa13.56□□□□□ -0.24
LINC01238-201ENST00000416204 QRICH2Q9H0J4 1663 aa13.56□□□□□ -0.24
LINC01238-201ENST00000416204 BCL9O00512 1426 aa13.56□□□□□ -0.24
LINC01238-201ENST00000416204 KCNQ4P56696 695 aa13.55□□□□□ -0.24
LINC01238-201ENST00000416204 TNS2Q63HR2 1409 aa13.55□□□□□ -0.24
LINC01238-201ENST00000416204 GIGYF1O75420 1035 aaPredicted RBP13.54□□□□□ -0.24
LINC01238-201ENST00000416204 LRRC4BQ9NT99 713 aa13.54□□□□□ -0.24
LINC01238-201ENST00000416204 NLRP2Q9NX02 1062 aa13.54□□□□□ -0.24
LINC01238-201ENST00000416204 BRD4O60885 1362 aaPredicted RBP13.54□□□□□ -0.24
LINC01238-201ENST00000416204 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.53□□□□□ -0.24
LINC01238-201ENST00000416204 KCNH5Q8NCM2 988 aa13.53□□□□□ -0.24
LINC01238-201ENST00000416204 KIAA1210Q9ULL0 1709 aa13.53□□□□□ -0.24
LINC01238-201ENST00000416204 NLGN2Q8NFZ4 835 aa13.52□□□□□ -0.25
LINC01238-201ENST00000416204 NHSQ6T4R5 1651 aa13.52□□□□□ -0.25
LINC01238-201ENST00000416204 CHD4Q14839 1912 aa13.51□□□□□ -0.25
LINC01238-201ENST00000416204 PAPPAQ13219 1627 aa13.51□□□□□ -0.25
LINC01238-201ENST00000416204 NFAT5O94916 1531 aa13.51□□□□□ -0.25
LINC01238-201ENST00000416204 CCDC7Q96M83 1385 aa13.51□□□□□ -0.25
LINC01238-201ENST00000416204 EVC2Q86UK5 1308 aa13.51□□□□□ -0.25
LINC01238-201ENST00000416204 IFFO2Q5TF58 517 aa13.5□□□□□ -0.25
LINC01238-201ENST00000416204 KTN1Q86UP2 1357 aaKnown RBP13.49□□□□□ -0.25
LINC01238-201ENST00000416204 IL2RBP14784 551 aa13.49□□□□□ -0.25
LINC01238-201ENST00000416204 NME9Q86XW9 330 aa13.49□□□□□ -0.25
LINC01238-201ENST00000416204 DDX54Q8TDD1 881 aaKnown RBP13.49□□□□□ -0.25
LINC01238-201ENST00000416204 TRPM1Q7Z4N2 1603 aa13.49□□□□□ -0.25
LINC01238-201ENST00000416204 BTAF1O14981 1849 aa13.48□□□□□ -0.25
LINC01238-201ENST00000416204 MAP3K5Q99683 1374 aa13.48□□□□□ -0.25
LINC01238-201ENST00000416204 POLD1P28340 1107 aa13.48□□□□□ -0.25
LINC01238-201ENST00000416204 ANKRD24Q8TF21 1146 aa13.48□□□□□ -0.25
LINC01238-201ENST00000416204 AKT1S1Q96B36 256 aa13.48□□□□□ -0.25
LINC01238-201ENST00000416204 SYTL4Q96C24 671 aaPredicted RBP13.48□□□□□ -0.25
LINC01238-201ENST00000416204 ABCC6O95255 1503 aa13.48□□□□□ -0.25
LINC01238-201ENST00000416204 ERBB3P21860 1342 aa13.47□□□□□ -0.25
LINC01238-201ENST00000416204 PNPLA7Q6ZV29 1317 aa13.47□□□□□ -0.25
LINC01238-201ENST00000416204 YBX3P16989 372 aaKnown RBP eCLIP13.47□□□□□ -0.25
LINC01238-201ENST00000416204 LTV1Q96GA3 475 aaPredicted RBP13.47□□□□□ -0.25
LINC01238-201ENST00000416204 TFCP2L1Q9NZI6 479 aa13.47□□□□□ -0.25
LINC01238-201ENST00000416204 TTC21AQ8NDW8 1320 aa13.46□□□□□ -0.25
LINC01238-201ENST00000416204 MSH5O43196 834 aa13.46□□□□□ -0.25
LINC01238-201ENST00000416204 ZNF692Q9BU19 519 aaPredicted RBP13.46□□□□□ -0.25
LINC01238-201ENST00000416204 SHANK3Q9BYB0 1731 aa13.45□□□□□ -0.26
LINC01238-201ENST00000416204 MSL1Q68DK7 614 aa13.45□□□□□ -0.26
LINC01238-201ENST00000416204 L3MBTL2Q969R5 705 aa13.45□□□□□ -0.26
LINC01238-201ENST00000416204 KAT6BQ8WYB5 2073 aa13.44□□□□□ -0.26
LINC01238-201ENST00000416204 ZNF526Q8TF50 670 aaPredicted RBP13.44□□□□□ -0.26
LINC01238-201ENST00000416204 WWC3Q9ULE0 1092 aa13.44□□□□□ -0.26
LINC01238-201ENST00000416204 PRIM1P49642 420 aaKnown RBP13.43□□□□□ -0.26
LINC01238-201ENST00000416204 TMC1Q8TDI8 760 aa13.43□□□□□ -0.26
LINC01238-201ENST00000416204 ROCK2O75116 1388 aaKnown RBP13.42□□□□□ -0.26
LINC01238-201ENST00000416204 ATP10DQ9P241 1426 aa13.41□□□□□ -0.26
LINC01238-201ENST00000416204 SLC27A3Q5K4L6 730 aa13.41□□□□□ -0.26
LINC01238-201ENST00000416204 SLC16A10Q8TF71 515 aa13.41□□□□□ -0.26
LINC01238-201ENST00000416204 SIN3AQ96ST3 1273 aa13.41□□□□□ -0.26
LINC01238-201ENST00000416204 TUBGCP6Q96RT7 1819 aa13.41□□□□□ -0.26
LINC01238-201ENST00000416204 LTN1O94822 1766 aa13.4□□□□□ -0.26
LINC01238-201ENST00000416204 NEUROD1Q13562 356 aa13.4□□□□□ -0.26
LINC01238-201ENST00000416204 SBNO2Q9Y2G9 1366 aa13.4□□□□□ -0.26
LINC01238-201ENST00000416204 FBLN1P23142 703 aa13.39□□□□□ -0.27
LINC01238-201ENST00000416204 COL23A1Q86Y22 540 aaPredicted RBP13.39□□□□□ -0.27
LINC01238-201ENST00000416204 SLC12A5Q9H2X9 1139 aa13.39□□□□□ -0.27
LINC01238-201ENST00000416204 CCNL1Q9UK58 526 aaPredicted RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms