RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 DXOO77932 396 aaKnown RBP8.3□□□□□ -1.08
CLK1-202ENST00000409403 FGD5Q6ZNL6 1462 aa8.29□□□□□ -1.08
CLK1-202ENST00000409403 MMP16P51512 607 aa8.29□□□□□ -1.08
CLK1-202ENST00000409403 PTPN5P54829 565 aa8.29□□□□□ -1.08
CLK1-202ENST00000409403 ADAMTS19Q8TE59 1207 aa8.29□□□□□ -1.08
CLK1-202ENST00000409403 PLA2G2EQ9NZK7 142 aa8.29□□□□□ -1.08
CLK1-202ENST00000409403 MAP10Q9P2G4 905 aa8.29□□□□□ -1.08
CLK1-202ENST00000409403 BCORL1Q5H9F3 1711 aa8.29□□□□□ -1.08
CLK1-202ENST00000409403 STRCQ7RTU9 1775 aa8.28□□□□□ -1.08
CLK1-202ENST00000409403 ADH1BP00325 375 aa8.28□□□□□ -1.08
CLK1-202ENST00000409403 CCNYL3P0C7X3 344 aa8.28□□□□□ -1.08
CLK1-202ENST00000409403 CTHP32929 405 aa8.28□□□□□ -1.08
CLK1-202ENST00000409403 SOX11P35716 441 aa8.28□□□□□ -1.08
CLK1-202ENST00000409403 ADAMTS12P58397 1594 aa8.28□□□□□ -1.08
CLK1-202ENST00000409403 MTRQ99707 1265 aa8.28□□□□□ -1.08
CLK1-202ENST00000409403 FKBPLQ9UIM3 349 aa8.28□□□□□ -1.08
CLK1-202ENST00000409403 TLL1O43897 1013 aa8.27□□□□□ -1.08
CLK1-202ENST00000409403 NUDT12Q9BQG2 462 aa8.27□□□□□ -1.08
CLK1-202ENST00000409403 ALG2Q9H553 416 aa8.27□□□□□ -1.08
CLK1-202ENST00000409403 PRDM9Q9NQV7 894 aa8.27□□□□□ -1.08
CLK1-202ENST00000409403 CUL7Q14999 1698 aa8.27□□□□□ -1.08
CLK1-202ENST00000409403 ABCA5Q8WWZ7 1642 aa8.27□□□□□ -1.09
CLK1-202ENST00000409403 ZC3H4Q9UPT8 1303 aaKnown RBP8.27□□□□□ -1.09
CLK1-202ENST00000409403 TOP2AP11388 1531 aaKnown RBP8.27□□□□□ -1.09
CLK1-202ENST00000409403 IL21Q9HBE4 155 aa8.27□□□□□ -1.09
CLK1-202ENST00000409403 EVA1BQ9NVM1 165 aa8.27□□□□□ -1.09
CLK1-202ENST00000409403 NR1H3Q13133 447 aa8.26□□□□□ -1.09
CLK1-202ENST00000409403 EIF4G2P78344 907 aaKnown RBP eCLIP8.25□□□□□ -1.09
CLK1-202ENST00000409403 TRIM26Q12899 539 aaPredicted RBP8.25□□□□□ -1.09
CLK1-202ENST00000409403 TJAP1Q5JTD0 557 aa8.25□□□□□ -1.09
CLK1-202ENST00000409403 ARMC2Q8NEN0 867 aa8.25□□□□□ -1.09
CLK1-202ENST00000409403 TEX14Q8IWB6 1497 aa8.24□□□□□ -1.09
CLK1-202ENST00000409403 ZBBXA8MT70 800 aa8.24□□□□□ -1.09
CLK1-202ENST00000409403 CENPBP07199 599 aaPredicted RBP8.24□□□□□ -1.09
CLK1-202ENST00000409403 KCNH2Q12809 1159 aa8.24□□□□□ -1.09
CLK1-202ENST00000409403 SEMA3FQ13275 785 aa8.24□□□□□ -1.09
CLK1-202ENST00000409403 SETD1AO15047 1707 aaKnown RBP8.24□□□□□ -1.09
CLK1-202ENST00000409403 ACIN1Q9UKV3 1341 aaKnown RBP8.24□□□□□ -1.09
CLK1-202ENST00000409403 FBXO45P0C2W1 286 aa8.24□□□□□ -1.09
CLK1-202ENST00000409403 ZNF516Q92618 1163 aa8.24□□□□□ -1.09
CLK1-202ENST00000409403 LTBP4Q8N2S1 1624 aa8.23□□□□□ -1.09
CLK1-202ENST00000409403 PPP1R15AO75807 674 aaPredicted RBP8.23□□□□□ -1.09
CLK1-202ENST00000409403 GPKOWQ92917 476 aaPredicted RBP eCLIP8.23□□□□□ -1.092e-12■□□□□ 8.8
CLK1-202ENST00000409403 SLC6A16Q9GZN6 736 aa8.23□□□□□ -1.09
CLK1-202ENST00000409403 ASXL2Q76L83 1435 aa8.22□□□□□ -1.09
CLK1-202ENST00000409403 NBPF14Q5TI25 921 aa8.21□□□□□ -1.09
CLK1-202ENST00000409403 PPP1R12CQ9BZL4 782 aa8.21□□□□□ -1.09
CLK1-202ENST00000409403 PDXDC2PQ6P474 469 aa8.21□□□□□ -1.1
CLK1-202ENST00000409403 CCDC24Q8N4L8 307 aa8.21□□□□□ -1.1
CLK1-202ENST00000409403 GPSM3Q9Y4H4 160 aa8.21□□□□□ -1.1
CLK1-202ENST00000409403 RUSC2Q8N2Y8 1516 aa8.2□□□□□ -1.1
CLK1-202ENST00000409403 CFAP43Q8NDM7 1665 aa8.2□□□□□ -1.1
CLK1-202ENST00000409403 IQSEC2Q5JU85 1478 aa8.2□□□□□ -1.1
CLK1-202ENST00000409403 PDIA4P13667 645 aaKnown RBP8.2□□□□□ -1.1
CLK1-202ENST00000409403 PTK2Q05397 1052 aa8.2□□□□□ -1.1
CLK1-202ENST00000409403 UCN2Q96RP3 112 aa8.2□□□□□ -1.1
CLK1-202ENST00000409403 ABCC2Q92887 1545 aa8.19□□□□□ -1.1
CLK1-202ENST00000409403 KIAA0586Q9BVV6 1533 aa8.19□□□□□ -1.1
CLK1-202ENST00000409403 PALM3A6NDB9 673 aaPredicted RBP8.19□□□□□ -1.1
CLK1-202ENST00000409403 CFAP70Q5T0N1 1121 aa8.19□□□□□ -1.1
CLK1-202ENST00000409403 UNC93B1Q9H1C4 597 aa8.19□□□□□ -1.1
CLK1-202ENST00000409403 ZNF592Q92610 1267 aa8.18□□□□□ -1.1
CLK1-202ENST00000409403 PBXIP1Q96AQ6 731 aa8.18□□□□□ -1.1
CLK1-202ENST00000409403 EPRSP07814 1512 aaKnown RBP8.18□□□□□ -1.1
CLK1-202ENST00000409403 PREX1Q8TCU6 1659 aa8.18□□□□□ -1.1
CLK1-202ENST00000409403 RFX1P22670 979 aa8.18□□□□□ -1.1
CLK1-202ENST00000409403 NKX2-3Q8TAU0 364 aa8.18□□□□□ -1.1
CLK1-202ENST00000409403 TFIP11Q9UBB9 837 aaKnown RBP8.18□□□□□ -1.1
CLK1-202ENST00000409403 PLB1Q6P1J6 1458 aa8.17□□□□□ -1.1
CLK1-202ENST00000409403 S1PR4O95977 384 aa8.17□□□□□ -1.1
CLK1-202ENST00000409403 PTCRAQ6ISU1 281 aaPredicted RBP8.17□□□□□ -1.1
CLK1-202ENST00000409403 LMOD1P29536 600 aaPredicted RBP8.16□□□□□ -1.1
CLK1-202ENST00000409403 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.15□□□□□ -1.1
CLK1-202ENST00000409403 RETREG2Q8NC44 543 aa8.15□□□□□ -1.1
CLK1-202ENST00000409403 OCSTAMPQ9BR26 566 aa8.15□□□□□ -1.1
CLK1-202ENST00000409403 ARHGAP9Q9BRR9 750 aa8.15□□□□□ -1.1
CLK1-202ENST00000409403 FCF1Q9Y324 198 aaKnown RBP8.15□□□□□ -1.1
CLK1-202ENST00000409403 CUX1P39880 1505 aa8.15□□□□□ -1.11
CLK1-202ENST00000409403 ATP9BO43861 1147 aa8.14□□□□□ -1.11
CLK1-202ENST00000409403 MCCD1P59942 119 aaPredicted RBP8.14□□□□□ -1.11
CLK1-202ENST00000409403 TBC1D9Q6ZT07 1266 aa8.14□□□□□ -1.11
CLK1-202ENST00000409403 MAFBQ9Y5Q3 323 aaPredicted RBP8.14□□□□□ -1.11
CLK1-202ENST00000409403 CCDC88BA6NC98 1476 aa8.14□□□□□ -1.11
CLK1-202ENST00000409403 SRPK2P78362 688 aaKnown RBP8.14□□□□□ -1.11
CLK1-202ENST00000409403 KCNC4Q03721 635 aa8.14□□□□□ -1.11
CLK1-202ENST00000409403 SH3BP5LQ7L8J4 393 aa8.14□□□□□ -1.11
CLK1-202ENST00000409403 NFATC2IPQ8NCF5 419 aa8.14□□□□□ -1.11
CLK1-202ENST00000409403 ADAM32Q8TC27 787 aa8.14□□□□□ -1.11
CLK1-202ENST00000409403 PCDHB9Q9Y5E1 797 aa8.14□□□□□ -1.11
CLK1-202ENST00000409403 ZBTB33Q86T24 672 aa8.13□□□□□ -1.11
CLK1-202ENST00000409403 TRAIPQ9BWF2 469 aa8.13□□□□□ -1.11
CLK1-202ENST00000409403 YEATS2Q9ULM3 1422 aa8.13□□□□□ -1.11
CLK1-202ENST00000409403 ITGBL1O95965 494 aaPredicted RBP8.12□□□□□ -1.11
CLK1-202ENST00000409403 UBAP1LF5GYI3 381 aa8.11□□□□□ -1.11
CLK1-202ENST00000409403 PIK3CDO00329 1044 aa8.11□□□□□ -1.11
CLK1-202ENST00000409403 HSPA1LP34931 641 aa8.11□□□□□ -1.11
CLK1-202ENST00000409403 SH3RF1Q7Z6J0 888 aa8.11□□□□□ -1.11
CLK1-202ENST00000409403 BAP1Q92560 729 aa8.11□□□□□ -1.11
CLK1-202ENST00000409403 CEP126Q9P2H0 1117 aa8.11□□□□□ -1.11
CLK1-202ENST00000409403 FER1L4A9Z1Z3 1794 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms