RNA–Protein interactions for RNA: ENST00000396914.3

CHCHD4-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHCHD4, Length 1,405 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD4-202ENST00000396914 NSD2O96028 1365 aa40.17■■■■■ 4.02
CHCHD4-202ENST00000396914 CNGB1Q14028 1251 aaPredicted RBP40.16■■■■■ 4.02
CHCHD4-202ENST00000396914 AXIN2Q9Y2T1 843 aa40.16■■■■■ 4.02
CHCHD4-202ENST00000396914 AMPHP49418 695 aa40.16■■■■■ 4.02
CHCHD4-202ENST00000396914 RRS1Q15050 365 aaKnown RBP40.16■■■■■ 4.02
CHCHD4-202ENST00000396914 ANKRD26Q9UPS8 1709 aa40.15■■■■■ 4.02
CHCHD4-202ENST00000396914 MORC1Q86VD1 984 aa40.15■■■■■ 4.02
CHCHD4-202ENST00000396914 MAP3K19Q56UN5 1328 aa40.14■■■■■ 4.02
CHCHD4-202ENST00000396914 PER1O15534 1290 aaPredicted RBP40.14■■■■■ 4.02
CHCHD4-202ENST00000396914 COL18A1P39060 1754 aa40.14■■■■■ 4.02
CHCHD4-202ENST00000396914 CSB-PGBD3P0DP91 1061 aa40.12■■■■■ 4.01
CHCHD4-202ENST00000396914 AMER1Q5JTC6 1135 aaPredicted RBP40.12■■■■■ 4.01
CHCHD4-202ENST00000396914 COL5A2P05997 1499 aaPredicted RBP40.12■■■■■ 4.01
CHCHD4-202ENST00000396914 CC2D1BQ5T0F9 858 aaKnown RBP40.11■■■■■ 4.01
CHCHD4-202ENST00000396914 LARP1Q6PKG0 1096 aaKnown RBP40.11■■■■■ 4.01
CHCHD4-202ENST00000396914 RGPD5Q99666 1765 aa40.11■■■■■ 4.01
CHCHD4-202ENST00000396914 USP35Q9P2H5 1018 aa40.1■■■■■ 4.01
CHCHD4-202ENST00000396914 PPM1GO15355 546 aaPredicted RBP40.08■■■■■ 4.01
CHCHD4-202ENST00000396914 IP6K1Q92551 441 aa40.08■■■■■ 4.01
CHCHD4-202ENST00000396914 ABCC6O95255 1503 aa40.07■■■■■ 4.01
CHCHD4-202ENST00000396914 SPATA31A5Q5VU36 1347 aa40.06■■■■■ 4
CHCHD4-202ENST00000396914 SPATA31A7Q8IWB4 1347 aa40.06■■■■■ 4
CHCHD4-202ENST00000396914 TOM1L2Q6ZVM7 507 aa40.06■■■■■ 4
CHCHD4-202ENST00000396914 HOXC9P31274 260 aa40.05■■■■■ 4
CHCHD4-202ENST00000396914 DDX10Q13206 875 aaKnown RBP40.05■■■■■ 4
CHCHD4-202ENST00000396914 GLI3P10071 1580 aa40.05■■■■■ 4
CHCHD4-202ENST00000396914 A0A0G2JS52 829 aa40.04■■■■■ 4
CHCHD4-202ENST00000396914 MYT1Q01538 1121 aa40.04■■■■■ 4
CHCHD4-202ENST00000396914 LTV1Q96GA3 475 aaPredicted RBP40.04■■■■■ 4
CHCHD4-202ENST00000396914 EMILIN1Q9Y6C2 1016 aa40.02■■■■■ 4
CHCHD4-202ENST00000396914 SPATA31A1Q5TZJ5 1347 aa40.02■■■■■ 4
CHCHD4-202ENST00000396914 WDR17Q8IZU2 1322 aa40.02■■■■■ 4
CHCHD4-202ENST00000396914 ANKRD24Q8TF21 1146 aa40.01■■■■■ 4
CHCHD4-202ENST00000396914 BLMP54132 1417 aaPredicted RBP40■■■■□ 3.99
CHCHD4-202ENST00000396914 FAM98CQ17RN3 349 aaKnown RBP40■■■■□ 3.99
CHCHD4-202ENST00000396914 RTL1A6NKG5 1358 aa40■■■■□ 3.99
CHCHD4-202ENST00000396914 CRB1P82279 1406 aa40■■■■□ 3.99
CHCHD4-202ENST00000396914 ZNF316A6NFI3 1004 aaPredicted RBP39.99■■■■□ 3.99
CHCHD4-202ENST00000396914 MAP2P11137 1827 aaKnown RBP39.98■■■■□ 3.99
CHCHD4-202ENST00000396914 CDK12Q9NYV4 1490 aaPredicted RBP39.98■■■■□ 3.99
CHCHD4-202ENST00000396914 RGS12O14924 1447 aa39.97■■■■□ 3.99
CHCHD4-202ENST00000396914 ERBB3P21860 1342 aa39.97■■■■□ 3.99
CHCHD4-202ENST00000396914 NLRP2Q9NX02 1062 aa39.96■■■■□ 3.99
CHCHD4-202ENST00000396914 POLKQ9UBT6 870 aa39.96■■■■□ 3.99
CHCHD4-202ENST00000396914 FLT4P35916 1363 aa39.96■■■■□ 3.99
CHCHD4-202ENST00000396914 TCP11L2Q8N4U5 519 aa39.95■■■■□ 3.99
CHCHD4-202ENST00000396914 NPC1L1Q9UHC9 1359 aa39.95■■■■□ 3.99
CHCHD4-202ENST00000396914 HSP90AB2PQ58FF8 381 aa39.93■■■■□ 3.98
CHCHD4-202ENST00000396914 PEAK1Q9H792 1746 aa39.93■■■■□ 3.98
CHCHD4-202ENST00000396914 KIF24Q5T7B8 1368 aa39.92■■■■□ 3.98
CHCHD4-202ENST00000396914 SEPT12Q8IYM1 358 aa39.91■■■■□ 3.98
CHCHD4-202ENST00000396914 SMG6Q86US8 1419 aaKnown RBP39.89■■■■□ 3.98
CHCHD4-202ENST00000396914 CARD10Q9BWT7 1032 aa39.89■■■■□ 3.98
CHCHD4-202ENST00000396914 THRAP3Q9Y2W1 955 aaKnown RBP39.89■■■■□ 3.98
CHCHD4-202ENST00000396914 INSRP06213 1382 aa39.87■■■■□ 3.97
CHCHD4-202ENST00000396914 ONECUT3O60422 494 aaPredicted RBP39.86■■■■□ 3.97
CHCHD4-202ENST00000396914 BARGINQ6ZT62 677 aa39.85■■■■□ 3.97
CHCHD4-202ENST00000396914 FAM208AQ9UK61 1670 aaKnown RBP39.81■■■■□ 3.96
CHCHD4-202ENST00000396914 MTHFSP49914 203 aa39.77■■■■□ 3.96
CHCHD4-202ENST00000396914 THSD7AQ9UPZ6 1657 aa39.76■■■■□ 3.96
CHCHD4-202ENST00000396914 RGPD2P0DJD1 1756 aa39.75■■■■□ 3.95
CHCHD4-202ENST00000396914 BRWD3Q6RI45 1802 aa39.75■■■■□ 3.95
CHCHD4-202ENST00000396914 NBPF6Q5VWK0 638 aa39.74■■■■□ 3.95
CHCHD4-202ENST00000396914 NBPF4Q96M43 638 aa39.74■■■■□ 3.95
CHCHD4-202ENST00000396914 KRT27Q7Z3Y8 459 aa39.74■■■■□ 3.95
CHCHD4-202ENST00000396914 USHBP1Q8N6Y0 703 aa39.74■■■■□ 3.95
CHCHD4-202ENST00000396914 CDCA7Q9BWT1 371 aaPredicted RBP39.73■■■■□ 3.95
CHCHD4-202ENST00000396914 EIF4A2Q14240 407 aaKnown RBP39.72■■■■□ 3.95
CHCHD4-202ENST00000396914 IL2RBP14784 551 aa39.7■■■■□ 3.95
CHCHD4-202ENST00000396914 PDE3BQ13370 1112 aa39.7■■■■□ 3.95
CHCHD4-202ENST00000396914 WNK3Q9BYP7 1800 aa39.7■■■■□ 3.95
CHCHD4-202ENST00000396914 DDB1Q16531 1140 aa39.68■■■■□ 3.94
CHCHD4-202ENST00000396914 PPP2R1AP30153 589 aa39.65■■■■□ 3.94
CHCHD4-202ENST00000396914 PARP4Q9UKK3 1724 aaKnown RBP39.65■■■■□ 3.94
CHCHD4-202ENST00000396914 EYA1Q99502 592 aa39.64■■■■□ 3.94
CHCHD4-202ENST00000396914 DISP2A7MBM2 1401 aa39.64■■■■□ 3.94
CHCHD4-202ENST00000396914 EXOC5O00471 708 aa39.63■■■■□ 3.93
CHCHD4-202ENST00000396914 FAM182BQ5T319 152 aa39.63■■■■□ 3.93
CHCHD4-202ENST00000396914 SOCS7O14512 581 aa39.62■■■■□ 3.93
CHCHD4-202ENST00000396914 RAPGEF4Q8WZA2 1011 aa39.62■■■■□ 3.93
CHCHD4-202ENST00000396914 PARD3Q8TEW0 1356 aa39.62■■■■□ 3.93
CHCHD4-202ENST00000396914 LRRC37A3O60309 1634 aa39.61■■■■□ 3.93
CHCHD4-202ENST00000396914 CFAP53Q96M91 514 aa39.59■■■■□ 3.93
CHCHD4-202ENST00000396914 RALBP1Q15311 655 aa39.58■■■■□ 3.93
CHCHD4-202ENST00000396914 DIAPH1O60610 1272 aaKnown RBP39.57■■■■□ 3.92
CHCHD4-202ENST00000396914 TATP17735 454 aaPredicted RBP39.56■■■■□ 3.92
CHCHD4-202ENST00000396914 IL13P35225 146 aa39.55■■■■□ 3.92
CHCHD4-202ENST00000396914 MEGF6O75095 1541 aa39.53■■■■□ 3.92
CHCHD4-202ENST00000396914 TNS2Q63HR2 1409 aa39.52■■■■□ 3.92
CHCHD4-202ENST00000396914 IGSF1Q8N6C5 1336 aa39.51■■■■□ 3.92
CHCHD4-202ENST00000396914 ZCRB1Q8TBF4 217 aaKnown RBP39.48■■■■□ 3.91
CHCHD4-202ENST00000396914 DDX54Q8TDD1 881 aaKnown RBP39.48■■■■□ 3.91
CHCHD4-202ENST00000396914 U2SURPO15042 1029 aaKnown RBP39.48■■■■□ 3.91
CHCHD4-202ENST00000396914 FAM196AQ6ZSG2 479 aa39.48■■■■□ 3.91
CHCHD4-202ENST00000396914 OVOS2A0A0G2JMS6 1433 aa39.47■■■■□ 3.91
CHCHD4-202ENST00000396914 SULT6B1Q6IMI4 303 aa39.47■■■■□ 3.91
CHCHD4-202ENST00000396914 MARCH10Q8NA82 808 aaPredicted RBP39.47■■■■□ 3.91
CHCHD4-202ENST00000396914 UPF1Q92900 1129 aaKnown RBP eCLIP39.47■■■■□ 3.91
CHCHD4-202ENST00000396914 NCAPD2Q15021 1401 aa39.46■■■■□ 3.91
CHCHD4-202ENST00000396914 COL3A1P02461 1466 aaPredicted RBP39.45■■■■□ 3.91
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms