RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 SLC4A2P04920 1241 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 ATF7IPQ6VMQ6 1270 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 ANKRD30BQ9BXX2 1392 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 PTPN23Q9H3S7 1636 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 ARAP1Q96P48 1450 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 CAGE1Q8TC20 777 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 DNAJC2Q99543 621 aaKnown RBP6.49□□□□□ -1.37
VPS13C-204ENST00000395898 NOB1Q9ULX3 412 aaKnown RBP6.49□□□□□ -1.37
VPS13C-204ENST00000395898 ERBINQ96RT1 1412 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 NUTM2GQ5VZR2 741 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 PDILTQ8N807 584 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 FAM13BQ9NYF5 915 aa6.49□□□□□ -1.37
VPS13C-204ENST00000395898 CDKL5O76039 1030 aa6.48□□□□□ -1.37
VPS13C-204ENST00000395898 ZNHIT6Q9NWK9 470 aaKnown RBP6.48□□□□□ -1.37
VPS13C-204ENST00000395898 LAMC3Q9Y6N6 1575 aa6.48□□□□□ -1.37
VPS13C-204ENST00000395898 CWC15Q9P013 229 aaKnown RBP6.48□□□□□ -1.37
VPS13C-204ENST00000395898 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.48□□□□□ -1.37
VPS13C-204ENST00000395898 RTEL1-TNFRSF6BF6WH68 1400 aa6.48□□□□□ -1.37
VPS13C-204ENST00000395898 CCDC192P0DO97 292 aa6.48□□□□□ -1.37
VPS13C-204ENST00000395898 WDR33Q9C0J8 1336 aaKnown RBP6.48□□□□□ -1.37
VPS13C-204ENST00000395898 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.48□□□□□ -1.373e-10■■■■■ 94.2
VPS13C-204ENST00000395898 TOPBP1Q92547 1522 aa6.48□□□□□ -1.37
VPS13C-204ENST00000395898 HMGN5P82970 282 aaKnown RBP6.48□□□□□ -1.37
VPS13C-204ENST00000395898 TSPY26PQ9H489 355 aa6.47□□□□□ -1.37
VPS13C-204ENST00000395898 FOSBP53539 338 aa6.47□□□□□ -1.37
VPS13C-204ENST00000395898 SULT6B1Q6IMI4 303 aa6.47□□□□□ -1.37
VPS13C-204ENST00000395898 CAVIN1Q6NZI2 390 aaKnown RBP6.47□□□□□ -1.37
VPS13C-204ENST00000395898 MPHOSPH8Q99549 860 aa6.47□□□□□ -1.37
VPS13C-204ENST00000395898 CCDC69A6NI79 296 aa6.47□□□□□ -1.37
VPS13C-204ENST00000395898 SAMD1Q6SPF0 538 aaPredicted RBP6.47□□□□□ -1.37
VPS13C-204ENST00000395898 ERLIN2O94905 339 aa6.47□□□□□ -1.37
VPS13C-204ENST00000395898 EXOSC9Q06265 439 aaKnown RBP6.47□□□□□ -1.37
VPS13C-204ENST00000395898 KRT32Q14532 448 aa6.47□□□□□ -1.37
VPS13C-204ENST00000395898 PROSER2Q86WR7 435 aaPredicted RBP6.47□□□□□ -1.37
VPS13C-204ENST00000395898 ITSN2Q9NZM3 1697 aa6.47□□□□□ -1.37
VPS13C-204ENST00000395898 KRT85P78386 507 aa6.47□□□□□ -1.37
VPS13C-204ENST00000395898 ZNF287Q9HBT7 754 aa6.47□□□□□ -1.37
VPS13C-204ENST00000395898 TOM1L2Q6ZVM7 507 aa6.47□□□□□ -1.37
VPS13C-204ENST00000395898 CTNNA3Q9UI47 895 aa6.47□□□□□ -1.37
VPS13C-204ENST00000395898 POLA1P09884 1462 aaPredicted RBP6.47□□□□□ -1.37
VPS13C-204ENST00000395898 BTBD11A6QL63 1104 aa6.46□□□□□ -1.37
VPS13C-204ENST00000395898 FAM135AQ9P2D6 1515 aa6.46□□□□□ -1.37
VPS13C-204ENST00000395898 FCHSD2O94868 740 aa6.46□□□□□ -1.37
VPS13C-204ENST00000395898 SF3B2Q13435 895 aaKnown RBP6.46□□□□□ -1.37
VPS13C-204ENST00000395898 SMC2O95347 1197 aa6.46□□□□□ -1.37
VPS13C-204ENST00000395898 MVPQ14764 893 aaKnown RBP6.46□□□□□ -1.37
VPS13C-204ENST00000395898 RBM42Q9BTD8 480 aaKnown RBP6.46□□□□□ -1.37
VPS13C-204ENST00000395898 ZRSR2Q15696 482 aaKnown RBP6.46□□□□□ -1.38
VPS13C-204ENST00000395898 ANKLE2Q86XL3 938 aa6.46□□□□□ -1.38
VPS13C-204ENST00000395898 SLC12A5Q9H2X9 1139 aa6.46□□□□□ -1.38
VPS13C-204ENST00000395898 KRT18P05783 430 aaKnown RBP6.46□□□□□ -1.38
VPS13C-204ENST00000395898 KCNH5Q8NCM2 988 aa6.46□□□□□ -1.38
VPS13C-204ENST00000395898 STK38Q15208 465 aa6.46□□□□□ -1.38
VPS13C-204ENST00000395898 CHD1LQ86WJ1 897 aa6.46□□□□□ -1.38
VPS13C-204ENST00000395898 K7ELQ4 463 aaPredicted RBP6.46□□□□□ -1.38
VPS13C-204ENST00000395898 PRPF40AO75400 957 aaKnown RBP6.45□□□□□ -1.38
VPS13C-204ENST00000395898 SERPINC1P01008 464 aa6.45□□□□□ -1.38
VPS13C-204ENST00000395898 TMEM132AQ24JP5 1023 aa6.45□□□□□ -1.38
VPS13C-204ENST00000395898 PHF23Q9BUL5 403 aaPredicted RBP6.45□□□□□ -1.38
VPS13C-204ENST00000395898 STRN4Q9NRL3 753 aa6.45□□□□□ -1.38
VPS13C-204ENST00000395898 CABP1Q9NZU7 370 aa6.45□□□□□ -1.38
VPS13C-204ENST00000395898 PDZRN3Q9UPQ7 1066 aa6.45□□□□□ -1.38
VPS13C-204ENST00000395898 PATL2C9JE40 543 aaKnown RBP6.45□□□□□ -1.38
VPS13C-204ENST00000395898 NOL7Q9UMY1 257 aaKnown RBP6.45□□□□□ -1.38
VPS13C-204ENST00000395898 SNAPC4Q5SXM2 1469 aa6.45□□□□□ -1.38
VPS13C-204ENST00000395898 GOLGA6L10A6NI86 522 aa6.45□□□□□ -1.38
VPS13C-204ENST00000395898 STARD3NLO95772 234 aa6.45□□□□□ -1.38
VPS13C-204ENST00000395898 GNAT3A8MTJ3 354 aa6.45□□□□□ -1.38
VPS13C-204ENST00000395898 CCDC191Q8NCU4 936 aa6.45□□□□□ -1.38
VPS13C-204ENST00000395898 WASF1Q92558 559 aa6.45□□□□□ -1.38
VPS13C-204ENST00000395898 PRXQ9BXM0 1461 aa6.45□□□□□ -1.38
VPS13C-204ENST00000395898 ME1P48163 572 aa6.45□□□□□ -1.38
VPS13C-204ENST00000395898 BLOC1S2Q6QNY1 142 aa6.45□□□□□ -1.38
VPS13C-204ENST00000395898 CBFA2T2O43439 604 aa6.45□□□□□ -1.38
VPS13C-204ENST00000395898 MYL6BP14649 208 aa6.45□□□□□ -1.38
VPS13C-204ENST00000395898 WDR97A6NE52 1622 aa6.45□□□□□ -1.38
VPS13C-204ENST00000395898 CDCA7LQ96GN5 454 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 SOGA3Q5TF21 947 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 IQCEQ6IPM2 695 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 RPAP2Q8IXW5 612 aaPredicted RBP6.44□□□□□ -1.38
VPS13C-204ENST00000395898 KLHL34Q8N239 644 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 TNMDQ9H2S6 317 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 BMP2KQ9NSY1 1161 aaPredicted RBP6.44□□□□□ -1.38
VPS13C-204ENST00000395898 MTMR7Q9Y216 660 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 ZNF652Q9Y2D9 606 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 RAB11FIP3O75154 756 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 DESP17661 470 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 FKBP4Q02790 459 aaKnown RBP eCLIP6.44□□□□□ -1.38
VPS13C-204ENST00000395898 LARP1BQ659C4 914 aaKnown RBP6.44□□□□□ -1.38
VPS13C-204ENST00000395898 ANKRD18AQ8IVF6 992 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 CTTNBP2Q8WZ74 1663 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 CCDC66A2RUB6 948 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 SRGAP3O43295 1099 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 PPFIBP1Q86W92 1011 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 CEP131Q9UPN4 1083 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 AKAP2Q9Y2D5 859 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 CCDC61Q9Y6R9 512 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 TRIM21P19474 475 aaKnown RBP6.44□□□□□ -1.38
VPS13C-204ENST00000395898 BRPF1P55201 1214 aaPredicted RBP6.44□□□□□ -1.38
VPS13C-204ENST00000395898 DEF6Q9H4E7 631 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms