RNA–Protein interactions for RNA: ENST00000394892.2

ATG4A-205, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 935 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-205ENST00000394892 PCGF6Q9BYE7 350 aa12.54□□□□□ -0.4
ATG4A-205ENST00000394892 USP47Q96K76 1375 aa12.53□□□□□ -0.4
ATG4A-205ENST00000394892 AKAP12Q02952 1782 aa12.53□□□□□ -0.4
ATG4A-205ENST00000394892 CRB1P82279 1406 aa12.53□□□□□ -0.4
ATG4A-205ENST00000394892 FBLN1P23142 703 aa12.52□□□□□ -0.41
ATG4A-205ENST00000394892 PDE3BQ13370 1112 aa12.52□□□□□ -0.41
ATG4A-205ENST00000394892 TRIM37O94972 964 aa12.51□□□□□ -0.41
ATG4A-205ENST00000394892 APBA3O96018 575 aa12.51□□□□□ -0.41
ATG4A-205ENST00000394892 PTF1AQ7RTS3 328 aa12.51□□□□□ -0.41
ATG4A-205ENST00000394892 KCNH5Q8NCM2 988 aa12.51□□□□□ -0.41
ATG4A-205ENST00000394892 THRAP3Q9Y2W1 955 aaKnown RBP12.51□□□□□ -0.41
ATG4A-205ENST00000394892 WDR17Q8IZU2 1322 aa12.51□□□□□ -0.41
ATG4A-205ENST00000394892 OVOS2A0A0J9YW53 1432 aa12.51□□□□□ -0.41
ATG4A-205ENST00000394892 OVOS2Q6IE36 1432 aa12.51□□□□□ -0.41
ATG4A-205ENST00000394892 EDC4Q6P2E9 1401 aaKnown RBP12.51□□□□□ -0.41
ATG4A-205ENST00000394892 EZH2Q15910 746 aaKnown RBP12.5□□□□□ -0.41
ATG4A-205ENST00000394892 NBPF14Q5TI25 921 aa12.5□□□□□ -0.41
ATG4A-205ENST00000394892 HDGFL2Q7Z4V5 671 aaPredicted RBP12.5□□□□□ -0.41
ATG4A-205ENST00000394892 CAMKK2Q96RR4 588 aa12.5□□□□□ -0.41
ATG4A-205ENST00000394892 PARD3Q8TEW0 1356 aa12.5□□□□□ -0.41
ATG4A-205ENST00000394892 DISP2A7MBM2 1401 aa12.5□□□□□ -0.41
ATG4A-205ENST00000394892 MON2Q7Z3U7 1717 aa12.5□□□□□ -0.41
ATG4A-205ENST00000394892 RGPD1P0DJD0 1748 aa12.49□□□□□ -0.41
ATG4A-205ENST00000394892 TOM1L2Q6ZVM7 507 aa12.49□□□□□ -0.41
ATG4A-205ENST00000394892 TERF2IPQ9NYB0 399 aa12.49□□□□□ -0.41
ATG4A-205ENST00000394892 CLSPNQ9HAW4 1339 aa12.48□□□□□ -0.41
ATG4A-205ENST00000394892 DCAF8L1A6NGE4 600 aa12.48□□□□□ -0.41
ATG4A-205ENST00000394892 MARCH10Q8NA82 808 aaPredicted RBP12.48□□□□□ -0.41
ATG4A-205ENST00000394892 CARD10Q9BWT7 1032 aa12.48□□□□□ -0.41
ATG4A-205ENST00000394892 TIMELESSQ9UNS1 1208 aa12.48□□□□□ -0.41
ATG4A-205ENST00000394892 C11orf95C9JLR9 678 aaPredicted RBP12.47□□□□□ -0.41
ATG4A-205ENST00000394892 ERBB3P21860 1342 aa12.46□□□□□ -0.41
ATG4A-205ENST00000394892 USP54Q70EL1 1684 aa12.46□□□□□ -0.41
ATG4A-205ENST00000394892 CARD14Q9BXL6 1004 aa12.46□□□□□ -0.41
ATG4A-205ENST00000394892 ANKRD36BQ8N2N9 1353 aa12.45□□□□□ -0.42
ATG4A-205ENST00000394892 NINLQ9Y2I6 1382 aa12.45□□□□□ -0.42
ATG4A-205ENST00000394892 FYB1O15117 783 aa12.45□□□□□ -0.42
ATG4A-205ENST00000394892 PPP1R1BQ9UD71 204 aaPredicted RBP12.45□□□□□ -0.42
ATG4A-205ENST00000394892 TNS1Q9HBL0 1735 aaKnown RBP12.45□□□□□ -0.42
ATG4A-205ENST00000394892 MAP3K19Q56UN5 1328 aa12.44□□□□□ -0.42
ATG4A-205ENST00000394892 CSB-PGBD3P0DP91 1061 aa12.44□□□□□ -0.42
ATG4A-205ENST00000394892 TMF1P82094 1093 aa12.44□□□□□ -0.42
ATG4A-205ENST00000394892 DDB1Q16531 1140 aa12.44□□□□□ -0.42
ATG4A-205ENST00000394892 ANKRD24Q8TF21 1146 aa12.44□□□□□ -0.42
ATG4A-205ENST00000394892 PEAK1Q9H792 1746 aa12.44□□□□□ -0.42
ATG4A-205ENST00000394892 ABCC6O95255 1503 aa12.43□□□□□ -0.42
ATG4A-205ENST00000394892 PARP4Q9UKK3 1724 aaKnown RBP12.43□□□□□ -0.42
ATG4A-205ENST00000394892 IP6K1Q92551 441 aa12.43□□□□□ -0.42
ATG4A-205ENST00000394892 GGNBP2Q9H3C7 697 aa12.43□□□□□ -0.42
ATG4A-205ENST00000394892 LRRC37A3O60309 1634 aa12.43□□□□□ -0.42
ATG4A-205ENST00000394892 PROM2Q8N271 834 aa12.42□□□□□ -0.42
ATG4A-205ENST00000394892 SPON1Q9HCB6 807 aa12.42□□□□□ -0.42
ATG4A-205ENST00000394892 OVOS2A0A0G2JMS6 1433 aa12.41□□□□□ -0.42
ATG4A-205ENST00000394892 BCL9O00512 1426 aa12.41□□□□□ -0.42
ATG4A-205ENST00000394892 SLC24A1O60721 1099 aa12.41□□□□□ -0.42
ATG4A-205ENST00000394892 YY1P25490 414 aa12.41□□□□□ -0.42
ATG4A-205ENST00000394892 RRS1Q15050 365 aaKnown RBP12.41□□□□□ -0.42
ATG4A-205ENST00000394892 NLRP2Q9NX02 1062 aa12.41□□□□□ -0.42
ATG4A-205ENST00000394892 CCDC7Q96M83 1385 aa12.41□□□□□ -0.42
ATG4A-205ENST00000394892 RGPD5Q99666 1765 aa12.41□□□□□ -0.42
ATG4A-205ENST00000394892 KCNQ2O43526 872 aa12.4□□□□□ -0.42
ATG4A-205ENST00000394892 HOXC9P31274 260 aa12.4□□□□□ -0.42
ATG4A-205ENST00000394892 CCER1Q8TC90 406 aaPredicted RBP12.4□□□□□ -0.42
ATG4A-205ENST00000394892 COG3Q96JB2 828 aa12.4□□□□□ -0.42
ATG4A-205ENST00000394892 CDCA7Q9BWT1 371 aaPredicted RBP12.4□□□□□ -0.42
ATG4A-205ENST00000394892 HSPA5P11021 654 aaKnown RBP12.39□□□□□ -0.43
ATG4A-205ENST00000394892 LTV1Q96GA3 475 aaPredicted RBP12.39□□□□□ -0.43
ATG4A-205ENST00000394892 BCL11BQ9C0K0 894 aaPredicted RBP12.39□□□□□ -0.43
ATG4A-205ENST00000394892 EXOC5O00471 708 aa12.38□□□□□ -0.43
ATG4A-205ENST00000394892 TNS2Q63HR2 1409 aa12.37□□□□□ -0.43
ATG4A-205ENST00000394892 IL2RBP14784 551 aa12.37□□□□□ -0.43
ATG4A-205ENST00000394892 ANO8Q9HCE9 1232 aaPredicted RBP12.37□□□□□ -0.43
ATG4A-205ENST00000394892 NSD3Q9BZ95 1437 aa12.37□□□□□ -0.43
ATG4A-205ENST00000394892 PLSCR1O15162 318 aa12.36□□□□□ -0.43
ATG4A-205ENST00000394892 NBPF6Q5VWK0 638 aa12.36□□□□□ -0.43
ATG4A-205ENST00000394892 NBPF4Q96M43 638 aa12.36□□□□□ -0.43
ATG4A-205ENST00000394892 MYOM1P52179 1685 aa12.35□□□□□ -0.43
ATG4A-205ENST00000394892 AMPHP49418 695 aa12.35□□□□□ -0.43
ATG4A-205ENST00000394892 CDCA8Q53HL2 280 aa12.35□□□□□ -0.43
ATG4A-205ENST00000394892 HSP90AB2PQ58FF8 381 aa12.35□□□□□ -0.43
ATG4A-205ENST00000394892 ACSBG1Q96GR2 724 aa12.35□□□□□ -0.43
ATG4A-205ENST00000394892 EMILIN1Q9Y6C2 1016 aa12.35□□□□□ -0.43
ATG4A-205ENST00000394892 WNK3Q9BYP7 1800 aa12.34□□□□□ -0.43
ATG4A-205ENST00000394892 USHBP1Q8N6Y0 703 aa12.34□□□□□ -0.43
ATG4A-205ENST00000394892 PDGFDQ9GZP0 370 aaPredicted RBP12.34□□□□□ -0.43
ATG4A-205ENST00000394892 RREB1Q92766 1687 aa12.34□□□□□ -0.43
ATG4A-205ENST00000394892 LTN1O94822 1766 aa12.33□□□□□ -0.44
ATG4A-205ENST00000394892 MEGF6O75095 1541 aa12.33□□□□□ -0.44
ATG4A-205ENST00000394892 EIF4G2P78344 907 aaKnown RBP eCLIP12.33□□□□□ -0.44
ATG4A-205ENST00000394892 FAM208AQ9UK61 1670 aaKnown RBP12.32□□□□□ -0.44
ATG4A-205ENST00000394892 RTL1A6NKG5 1358 aa12.32□□□□□ -0.44
ATG4A-205ENST00000394892 INSRP06213 1382 aa12.31□□□□□ -0.44
ATG4A-205ENST00000394892 NUP188Q5SRE5 1749 aa12.31□□□□□ -0.44
ATG4A-205ENST00000394892 TXNRD1Q16881 649 aa12.31□□□□□ -0.44
ATG4A-205ENST00000394892 DDX54Q8TDD1 881 aaKnown RBP12.31□□□□□ -0.44
ATG4A-205ENST00000394892 SBF2Q86WG5 1849 aa12.3□□□□□ -0.44
ATG4A-205ENST00000394892 POLR3GLQ9BT43 218 aa12.3□□□□□ -0.44
ATG4A-205ENST00000394892 PANK3Q9H999 370 aa12.3□□□□□ -0.44
ATG4A-205ENST00000394892 STK32BQ9NY57 414 aa12.3□□□□□ -0.44
ATG4A-205ENST00000394892 POLKQ9UBT6 870 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms